mRNA_H-elongata_contig52861.12606.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52861.12606.1
Unique NamemRNA_H-elongata_contig52861.12606.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52861.12606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52861contigH-elongata_contig52861:1057..2816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size602
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52861.12606.1prot_H-elongata_contig52861.12606.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52861 1074..2816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.3270423-UTR-H-elongata_contig52861:1056..10731622930863.3270423-UTR-H-elongata_contig52861:1056..1073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52861 1057..1073 +
1691679602.5871255-UTR-H-elongata_contig52861:1056..10731691679602.5871255-UTR-H-elongata_contig52861:1056..1073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52861 1057..1073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.3470094-CDS-H-elongata_contig52861:1073..13331622930863.3470094-CDS-H-elongata_contig52861:1073..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52861 1074..1333 +
1691679602.597313-CDS-H-elongata_contig52861:1073..13331691679602.597313-CDS-H-elongata_contig52861:1073..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52861 1074..1333 +
1622930863.3705823-CDS-H-elongata_contig52861:2491..28161622930863.3705823-CDS-H-elongata_contig52861:2491..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52861 2492..2816 +
1691679602.6145236-CDS-H-elongata_contig52861:2491..28161691679602.6145236-CDS-H-elongata_contig52861:2491..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52861 2492..2816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52861.12606.1

>prot_H-elongata_contig52861.12606.1 ID=prot_H-elongata_contig52861.12606.1|Name=mRNA_H-elongata_contig52861.12606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
METRTPKIGAWVNTVGSDDGKSLEKPKAGKGYVTKEGRSSVTREAASGFA
FEEDSRESFLDYKALIREQRRELEELKRAAREASPSNSRDSDDISPWRTG
DRGVVDGAAPDESPVSFERSPPSQLSLPQPPQPLPKNNSNESNNKDGGSE
GSLMRDFAVGDGDGNSGGGAVTPSVSSPCRFLPGGVSGAVSPYDA
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mRNA from alignment at H-elongata_contig52861:1057..2816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52861.12606.1 ID=mRNA_H-elongata_contig52861.12606.1|Name=mRNA_H-elongata_contig52861.12606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1760bp|location=Sequence derived from alignment at H-elongata_contig52861:1057..2816+ (Himanthalia elongata Himel1 dioecious)
CTCGTGTTCGCTAGTGGATGGAGACTCGTACTCCAAAGATCGGTGCCTGG
GTGAACACCGTAGGATCGGACGATGGGAAATCTTTAGAAAAGCCAAAAGC
TGGGAAGGGCTACGTAACTAAAGAAGGACGATCATCTGTAACGAGAGAAG
CAGCAAGCGGATTTGCTTTCGAGGAGGACAGCAGGGAATCTTTTCTAGAC
TACAAAGCGTTGATTCGGGAGCAGCGGCGAGAGCTTGAGGAGCTGAAGAG
GGCGGCTCGAGAAGCCTCGCCGAGCAAGTAGGTCAATCCGTCAGATATGA
TGTTTTATTTTTAGGACACCGGAGCCTAACGCGTACGCTGCGTCCGACAA
TCGAAGATGTCTCGGAGTTTGACCATCTCGTGGTTTGAATTTTTGTTTAT
CCTTGTTGTGCTCCGGACTCAGCGATCGTAAAGCTATAAAGCTATAACGA
ATATATTCTATTTTATAGTATTAATTTTGAAGGACGCAGGAGAGTAAACG
CTTGAGTTTAGCTGTGAATACGGTCCTCCGAGATCAAGGAGACCCCTCCC
CCGCAAGCAGCACAACTACACACAGTGCGATATTTTTACTTGTAAACTCT
TAATCTCGAAGATACTCTAAACCCTGTTCCACTACAGCCTACACGTTATC
TTTCAAATTTCCATAGTTTTCTCGCCCGACCTCACGAGCTTCTAAGATAA
GGGTGGATATTAGTAGTGTGTTTGAATAAATTCATTTATTTTTAAAGATA
AAACAGTAGGGAAAATATTATTTATTATTTCAATCCCGATCAAGATGATT
CTTTTGATTCCTGTCGAAAAACGGAAAATCATCGGAAACAAGCAAAGTTC
AACTAAATATCAGTTGACGAGATGTAGAAGCGCTGAACATATGTTGGCGT
GAACCAGTCGGGGATATATATAGTCATCCCCTAGGACCAAAAGCGGGATG
GGCAACGTTGCCGTAGTGGTATCGACAATCGGCATTGGTAATGTAGCACC
TTGAAGGTCCCTTATCATCGGGAGAAAGGACGAACTAGAAAAAGAAAAAA
ACGTAATCCCTCCAAAGCGGGGACCATGGGCAGGATGGATCTTGTGGTAT
CTCTTGAGGCAAAGACGTAGCTGTCGAGTACAAGTCTGCGCAATCTTTAC
CCCGTGACCTCGTACCACGTTGTACTCCCCAGGGGGGGCGGGGGGGGGCG
TACGGCGCGCGAGACACAGCGGGTGCGATGTCCGGATCCCTGAATTAATT
CCGGCACAGGTCATCTGACTCGTCTTTTTTTCTTTCTTTTTTTTGTACAG
GGCCCAGTATTCCATCGCCGTCGTCTCATTATTGTCTTTCTGTCCCCTTT
CCCCTCCCCTCCCCTCCCCTCCCCTCTCTCCTGTGGTATTATTCCTTCCG
GGCGCATGACGGTTCCGTGTGATGCTTTCTTCTAGCTCCAGAGATAGCGA
TGACATCTCCCCGTGGCGAACAGGCGACCGGGGCGTGGTTGATGGAGCCG
CGCCCGATGAAAGCCCGGTCAGCTTTGAAAGATCGCCTCCCTCGCAACTG
TCTCTGCCTCAGCCGCCCCAACCCTTACCAAAAAATAATTCCAATGAGAG
TAACAACAAGGATGGCGGTAGCGAGGGAAGCTTGATGCGCGATTTTGCCG
TCGGCGATGGCGATGGCAATAGTGGTGGGGGCGCAGTAACTCCTTCCGTA
TCTTCCCCTTGTCGTTTTCTCCCCGGTGGTGTCTCGGGAGCAGTCAGCCC
TTACGACGCT
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Coding sequence (CDS) from alignment at H-elongata_contig52861:1057..2816+

>mRNA_H-elongata_contig52861.12606.1 ID=mRNA_H-elongata_contig52861.12606.1|Name=mRNA_H-elongata_contig52861.12606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig52861:1057..2816+ (Himanthalia elongata Himel1 dioecious)
ATGGAGACTCGTACTCCAAAGATCGGTGCCTGGGTGAACACCGTAGGATC
GGACGATGGGAAATCTTTAGAAAAGCCAAAAGCTGGGAAGGGCTACGTAA
CTAAAGAAGGACGATCATCTGTAACGAGAGAAGCAGCAAGCGGATTTGCT
TTCGAGGAGGACAGCAGGGAATCTTTTCTAGACTACAAAGCGTTGATTCG
GGAGCAGCGGCGAGAGCTTGAGGAGCTGAAGAGGGCGGCTCGAGAAGCCT
CGCCGAGCAAATGGAGACTCGTACTCCAAAGATCGGTGCCTGGGTGAACA
CCGTAGGATCGGACGATGGGAAATCTTTAGAAAAGCCAAAAGCTGGGAAG
GGCTACGTAACTAAAGAAGGACGATCATCTGTAACGAGAGAAGCAGCAAG
CGGATTTGCTTTCGAGGAGGACAGCAGGGAATCTTTTCTAGACTACAAAG
CGTTGATTCGGGAGCAGCGGCGAGAGCTTGAGGAGCTGAAGAGGGCGGCT
CGAGAAGCCTCGCCGAGCAACTCCAGAGATAGCGATGACATCTCCCCGTG
GCGAACAGGCGACCGGGGCGTGGTTGATGGAGCCGCGCCCGATGAAAGCC
CGGTCAGCTTTGAAAGATCGCCTCCCTCGCAACTGTCTCTGCCTCAGCCG
CCCCAACCCTTACCAAAAAATAATTCCAATGAGAGTAACAACAAGGATGG
CGGTAGCGAGGGAAGCTTGATGCGCGATTTTGCCGTCGGCGATGGCGATG
GCAATAGTGGTGGGGGCGCAGTAACTCCTTCCGTATCTTCCCCTTGTCGT
TTTCTCCCCGGTGGTGTCTCGGGAGCAGTCAGCCCTTACGACGCTCTCCA
GAGATAGCGATGACATCTCCCCGTGGCGAACAGGCGACCGGGGCGTGGTT
GATGGAGCCGCGCCCGATGAAAGCCCGGTCAGCTTTGAAAGATCGCCTCC
CTCGCAACTGTCTCTGCCTCAGCCGCCCCAACCCTTACCAAAAAATAATT
CCAATGAGAGTAACAACAAGGATGGCGGTAGCGAGGGAAGCTTGATGCGC
GATTTTGCCGTCGGCGATGGCGATGGCAATAGTGGTGGGGGCGCAGTAAC
TCCTTCCGTATCTTCCCCTTGTCGTTTTCTCCCCGGTGGTGTCTCGGGAG
CAGTCAGCCCTTACGACGCT
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