mRNA_H-elongata_contig116008.1260.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116008.1260.1
Unique NamemRNA_H-elongata_contig116008.1260.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116008.1260.1 vs. uniprot
Match: D7G0S6_ECTSI (Similar to ubiquitin specific peptidase 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S6_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.290e-20
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 MEGEDYVLLNSRAYDLLEGWYGGGPRFKRWVVSLGNGAHNELRVELFPVK 150
            MEGEDYVLL++RAY+LLE WYGGGPRFKRWVVSLG+ A  +L VELFPV+
Sbjct:  145 MEGEDYVLLHNRAYELLEAWYGGGPRFKRWVVSLGDDARTQLTVELFPVR 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116008.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0S6_ECTSI1.290e-2078.00Similar to ubiquitin specific peptidase 15 n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116008contigH-elongata_contig116008:406..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7G0S6
KEGG koko:K11835,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.5627027-CDS-H-elongata_contig116008:405..5581622929673.5627027-CDS-H-elongata_contig116008:405..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116008 406..558 -
1691679114.5002048-CDS-H-elongata_contig116008:405..5581691679114.5002048-CDS-H-elongata_contig116008:405..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116008 406..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116008.1260.1prot_H-elongata_contig116008.1260.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116008 406..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116008.1260.1

>prot_H-elongata_contig116008.1260.1 ID=prot_H-elongata_contig116008.1260.1|Name=mRNA_H-elongata_contig116008.1260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MEGEDYVLLNSRAYDLLEGWYGGGPRFKRWVVSLGNGAHNELRVELFPVK
*
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mRNA from alignment at H-elongata_contig116008:406..558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116008.1260.1 ID=mRNA_H-elongata_contig116008.1260.1|Name=mRNA_H-elongata_contig116008.1260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig116008:406..558- (Himanthalia elongata Himel1 dioecious)
ATGGAAGGCGAAGACTACGTCCTGCTCAACAGCCGCGCCTACGACCTCCT
CGAGGGATGGTACGGCGGAGGACCCCGCTTCAAGCGCTGGGTGGTGTCCC
TGGGCAACGGCGCGCACAACGAGCTGAGGGTGGAGCTCTTTCCCGTCAAG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig116008:406..558-

>mRNA_H-elongata_contig116008.1260.1 ID=mRNA_H-elongata_contig116008.1260.1|Name=mRNA_H-elongata_contig116008.1260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig116008:406..558- (Himanthalia elongata Himel1 dioecious)
ATGGAAGGCGAAGACTACGTCCTGCTCAACAGCCGCGCCTACGACCTCCT
CGAGGGATGGTACGGCGGAGGACCCCGCTTCAAGCGCTGGGTGGTGTCCC
TGGGCAACGGCGCGCACAACGAGCTGAGGGTGGAGCTCTTTCCCGTCAAG
TGAATGGAAGGCGAAGACTACGTCCTGCTCAACAGCCGCGCCTACGACCT
CCTCGAGGGATGGTACGGCGGAGGACCCCGCTTCAAGCGCTGGGTGGTGT
CCCTGGGCAACGGCGCGCACAACGAGCTGAGGGTGGAGCTCTTTCCCGTC
AAGTGA
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