prot_H-elongata_contig52797.12596.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52797.12596.1
Unique Nameprot_H-elongata_contig52797.12596.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: D8LFJ1_ECTSI (Nuclear pore complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 6.450e-55
Identity = 109/189 (57.67%), Postives = 128/189 (67.72%), Query Frame = 0
Query:    1 PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLR-------KVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEAD-----GALYNPGQGLWQDMCWKL 177
            PN+SDE V+ +MR RDAEFRR E VVEWLQ    +RL+ L        G  LGWS TLE LA+GG  Q SE++QMHPDA+LR       KVM LVG+DD+DEE L+R+ W LVRAG L  AKRLCE RGQPWRAAAMAGG +VG R        V EG + R   +     GALY+PGQGLWQ+MCW+L
Sbjct:  277 PNASDEAVLVSMRARDAEFRRTEAVVEWLQGATHTRLNALGLGGGEGEGH-LGWSDTLESLAVGG-GQKSEVAQMHPDANLRSVSRGGLKVMRLVGQDDLDEENLLRSAWALVRAGRLSAAKRLCERRGQPWRAAAMAGGGVVGTR--------VMEGEEERELEEIEAGYGALYSPGQGLWQEMCWQL 455          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.330e-53
Identity = 108/189 (57.14%), Postives = 128/189 (67.72%), Query Frame = 0
Query:    1 PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLR-------KVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEAD-----GALYNPGQGLWQDMCWKL 177
            P++SDE ++ +MR RDAEFRR E VVEWLQ    +RL+ L     V  G  LGWS TLE LA GG  Q SE++QMHPDA+LR       KVM LVG+DD+DEE L+R+ W LVRAG L  AKRLCE RGQPWRAAAMAGG +VG R        V EG + R   +     GALY+PGQGLWQ+MCW+L
Sbjct:  276 PDASDEALLVSMRARDAEFRRTEAVVEWLQGATHTRLNALGLGGGVGEGH-LGWSDTLESLAAGG-GQKSEVAQMHPDANLRSVSRGGLKVMRLVGQDDLDEENLLRSAWALVRAGRLSAAKRLCEKRGQPWRAAAMAGGGVVGTR--------VMEGEEERELEEIEAGYGALYSPGQGLWQEMCWQL 454          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A1Y1IEG8_KLENI (Nuclear pore complex protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEG8_KLENI)

HSP 1 Score: 87.0 bits (214), Expect = 1.490e-16
Identity = 63/193 (32.64%), Postives = 92/193 (47.67%), Query Frame = 0
Query:    1 PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALG--------WSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGG-------ALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQG----LWQDMC 174
            P +S +E  C    +DA  +    VV+WL+D+   ++D        R GG  G        W  T + L       S+ +S + PDA  R+ + L  +D  DEE L+R VW L++AG L DA++LC D GQ WRAA++ G        ++ G RG++        G KR  E   A    G+G    LW+  C
Sbjct:  177 PPTSQQEA-CEYALQDARAQACMRVVQWLEDLAGQQVD----RDEKRHGGYAGLLRHSQGVWVRTAQALKSSQRPPSNLVSHVDPDAPTRENLRLHPQDSEDEELLMRGVWTLLKAGRLSDARQLCRDVGQAWRAASLGGTGDAGPVPSVEGFRGLT--------GTKRAREEQAAEIEAGRGRQRRLWKWTC 356          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A0P1A4E4_PLAHL (Nuclear pore complex protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4E4_PLAHL)

HSP 1 Score: 84.3 bits (207), Expect = 1.290e-15
Identity = 59/174 (33.91%), Postives = 83/174 (47.70%), Query Frame = 0
Query:    5 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 177
            +++ V  + TR   FR        +Q  VK  L+ +A    V  GG  G S +     L        +  M PDA +R     V +DD+ DE EL++ +W+ VRAG + DA  LC   GQ WRAA+++GG  VG            E  +RRN +     NP + LW+ MCW L
Sbjct:  390 EDDAVRLLETRSETFR--------IQRAVKMWLESMALEKTVNLGGKRGTSGSRTLRMLKRQELKKNVVYMDPDAVVRDGDAQVSQDDLEDEAELMKALWLYVRAGRMDDAVDLCIRLGQSWRAASLSGGHPVG----------ASESNERRNLSLERWGNPLRALWKSMCWLL 545          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A3M6V9N4_9STRA (Nuclear pore complex protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9N4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-14
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 0
Query:    5 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 177
            +++ V  + TR+  F+  + V+ WL+ +      +++      + GA G S TL  +       S E   M PDA LR     +  DDM DE EL++ VW+ +RAG + DA  LC   GQPWRAA+++GG  VG    +  E+   E             NP + LW+ MCW+L
Sbjct:  367 EDDAVRLLETRNETFKVQKAVMAWLESIALESTLNISD-----KRGASG-SRTLRMMRK--NVFSGEGINMDPDAVLRDGDDRILPDDMEDEAELMKAVWLFIRAGRMSDAIDLCIRSGQPWRAASLSGGNFVGASETNEREDLQVE----------RWGNPLRVLWKSMCWRL 522          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: K3WKE9_GLOUD (Nuclear pore complex protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKE9_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 3.790e-14
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 0
Query:    5 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 177
            +++ +  + TR+  F+    V  WL+ +   +      A   +RG     S TL+ +         E+  + PDA LR+    + +DD  DE EL+++VW+ +RAG + DA  LC   GQ WRAA+++GG  +G            E ++R++ A     NP + LW+  CWK 
Sbjct:  390 EDDAIRLLETRNENFKIQSVVKTWLETIALEK----TVAISEKRG--TSGSRTLKLMKK-NLINKEEVVHLDPDAMLREGDEFILEDDAEDEAELMKSVWLFIRAGKISDAVDLCIRLGQSWRAASLSGGTPLG----------ASESSERKDMALDRWGNPFRALWKTTCWKF 546          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A8J5XU59_DIALT (Nuclear pore complex protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU59_DIALT)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-13
Identity = 55/182 (30.22%), Postives = 84/182 (46.15%), Query Frame = 0
Query:    3 SSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDMDEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGI----------SYVEEYVHEGAKRRNEADGALYNPGQGLWQDMC 174
            + ++ +V A+   D+    A   V+WL+ V   R++ +   A  R         TL  LA         +S++  DA  R+ +PL  +D  DE  L+   W LVRAG L +A+RLC++ GQPWRAA + GG L   R +          + +      GA      D    NP +G+W + C
Sbjct:  113 ADEQSIVDALFEADSALAIARATVQWLESVAYERVEFVRTDAFHRN--------TLFRLAA-RIETDGIVSEVDADAPDRQRLPLDPEDATDEAGLLAAAWQLVRAGRLDEAQRLCDECGQPWRAATLDGGQLWQRRSVPAERIGGALCAQLGAGADAGADAAGTVDAWAGNPHRGVWLESC 285          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: H3H5G1_PHYRM (Nuclear pore complex protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5G1_PHYRM)

HSP 1 Score: 76.6 bits (187), Expect = 5.970e-13
Identity = 56/174 (32.18%), Postives = 84/174 (48.28%), Query Frame = 0
Query:    5 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKL 177
            +++ V  + TR+  ++    V  WL+ +    L+D    +  R  G    S TL  +   G     ++  M PDA LR     +  DD  DE EL++ VW+ VRAG + DA  LC   GQ WRAA+++GG  VG            E  +R + +     NP + LW+ MCW+L
Sbjct:  337 EDDAVRLLETRNETYKIQRAVKAWLESMA---LEDTISISDKRGAGG---SRTLRMMRKQGFPVDDDV-HMDPDAVLRDGDDHILPDDTEDEAELMKAVWLYVRAGRMDDAIDLCIRLGQSWRAASLSGGNPVG----------ASESNEREDLSLERWGNPFRALWKSMCWRL 493          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: M4BR63_HYAAE (Nuclear pore complex protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BR63_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.160e-13
Identity = 57/178 (32.02%), Postives = 85/178 (47.75%), Query Frame = 0
Query:    5 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALY----NPGQGLWQDMCWKL 177
            +++ V  +  ++  F+  + V  WL+ +       ++     +RG     S TL  +   G A   E  Q+ PDA LR     +  DDM DE EL++ VW+ VRAG + DA  LC   GQ WRAA+++GG+ VG                  NE DG       NP + LW+ +CW+L
Sbjct:  384 EDDAVRLLEAQNESFKVQKAVKAWLESMALENTITISD----KRG--TSGSRTLTMMRKQGFA--GENVQLDPDAVLRDGDDHILPDDMEDEAELLKAVWLYVRAGRMVDATDLCIRLGQSWRAASLSGGSSVG--------------VSETNERDGLSLERWGNPLRALWKSLCWRL 539          
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Match: A0A3R7H3V8_9STRA (Nuclear pore complex protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H3V8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.720e-12
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 0
Query:    5 DEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGGALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDM-DEEELVRTVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHEGAKRRNEADGALYNPGQGLWQDMCWKLRWEENG 183
            D++ V  +  R+  F+  + V  WL+ +      +++     +RG   G S TL+++    T    +  QM PDA LR     +  DD  DE EL++ VW+ +RAG + +A  LC   G+ WRAA+++GG   G            E  +R++ +     NP + LW+ MCW+L  +  G
Sbjct:  215 DDDAVRLLEIRNETFKIQKAVKAWLESMALESTINISD----KRGA--GGSRTLKFMRK-QTFPGDDQIQMDPDAVLRSGDSHILPDDTEDEAELMKAVWLFIRAGRVDEAIDLCIRLGESWRAASLSGGNPAG----------ASETNERQDLSLERWGNPFRALWKSMCWRLSEQATG 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52797.12596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFJ1_ECTSI6.450e-5557.67Nuclear pore complex protein n=1 Tax=Ectocarpus si... [more]
A0A6H5K9Z7_9PHAE1.330e-5357.14Nuclear pore complex protein n=1 Tax=Ectocarpus sp... [more]
A0A1Y1IEG8_KLENI1.490e-1632.64Nuclear pore complex protein n=1 Tax=Klebsormidium... [more]
A0A0P1A4E4_PLAHL1.290e-1533.91Nuclear pore complex protein n=1 Tax=Plasmopara ha... [more]
A0A3M6V9N4_9STRA1.110e-1433.33Nuclear pore complex protein n=1 Tax=Peronospora e... [more]
K3WKE9_GLOUD3.790e-1429.89Nuclear pore complex protein n=1 Tax=Globisporangi... [more]
A0A8J5XU59_DIALT4.360e-1330.22Nuclear pore complex protein n=2 Tax=Diacronema lu... [more]
H3H5G1_PHYRM5.970e-1332.18Nuclear pore complex protein n=1 Tax=Phytophthora ... [more]
M4BR63_HYAAE8.160e-1332.02Nuclear pore complex protein n=1 Tax=Hyaloperonosp... [more]
A0A3R7H3V8_9STRA2.720e-1230.00Nuclear pore complex protein n=3 Tax=Phytophthora ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3450.20coord: 56..183
e-value: 4.1E-10
score: 41.6
IPR007252Nuclear pore protein 84/107PFAMPF04121Nup84_Nup100coord: 1..177
e-value: 2.5E-28
score: 98.7
IPR007252Nuclear pore protein 84/107PANTHERPTHR13003NUP107-RELATEDcoord: 3..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52797contigH-elongata_contig52797:3093..3698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52797.12596.1mRNA_H-elongata_contig52797.12596.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52797 3093..3698 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52797.12596.1 ID=prot_H-elongata_contig52797.12596.1|Name=mRNA_H-elongata_contig52797.12596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
PNSSDEEVVCAMRTRDAEFRRAEHVVEWLQDVVKSRLDDLAPAARVRRGG
ALGWSATLEYLALGGTAQSSEISQMHPDASLRKVMPLVGKDDMDEEELVR
TVWVLVRAGLLGDAKRLCEDRGQPWRAAAMAGGALVGCRGISYVEEYVHE
GAKRRNEADGALYNPGQGLWQDMCWKLRWEENGRSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007252Nup84/Nup107