mRNA_H-elongata_contig52790.12593.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52790.12593.1
Unique NamemRNA_H-elongata_contig52790.12593.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 254 bits (649), Expect = 4.550e-85
Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 1 
Query:   25 LLQDTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            ++ +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    2 IITETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (642), Expect = 4.340e-84
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 250 bits (638), Expect = 1.770e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.990e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (642), Expect = 5.070e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   40 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: UPI0015C3C017 (LOW QUALITY PROTEIN: histone H3 isoform X2 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=UPI0015C3C017)

HSP 1 Score: 251 bits (640), Expect = 5.980e-83
Identity = 137/149 (91.95%), Postives = 143/149 (95.97%), Query Frame = 1 
Query:    7 RKLRYSLLQD--TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            R LR S+L+   TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   45 RXLRVSVLRSLSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 193
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A4W2FP88_BOBOX (Histone domain-containing protein n=1 Tax=Bos indicus x Bos taurus TaxID=30522 RepID=A0A4W2FP88_BOBOX)

HSP 1 Score: 250 bits (638), Expect = 8.900e-83
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   34 DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   47 DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 184
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 249 bits (635), Expect = 9.280e-83
Identity = 133/140 (95.00%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:   28 LQDTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            L  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   15 LTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A0C9RCG0_9HYME (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A0C9RCG0_9HYME)

HSP 1 Score: 248 bits (634), Expect = 9.420e-83
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   34 DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            D MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    7 DAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 144
[Close]
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME)

HSP 1 Score: 248 bits (634), Expect = 9.740e-83
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   34 DTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 447
            D MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    8 DAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52790.12593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK4.550e-8595.74Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA4.340e-8499.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO1.770e-8398.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.990e-8398.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC5.070e-8399.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
UPI0015C3C0175.980e-8391.95LOW QUALITY PROTEIN: histone H3 isoform X2 n=1 Tax... [more]
A0A4W2FP88_BOBOX8.900e-8396.38Histone domain-containing protein n=1 Tax=Bos indi... [more]
A0A164UB18_9CRUS9.280e-8395.00Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
A0A0C9RCG0_9HYME9.420e-8395.65Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321... [more]
A0A0C9RWZ2_9HYME9.740e-8395.65Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52790contigH-elongata_contig52790:126..575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue7.6e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.9470382-CDS-H-elongata_contig52790:125..5751622930861.9470382-CDS-H-elongata_contig52790:125..575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52790 126..575 -
1691679601.9709382-CDS-H-elongata_contig52790:125..5751691679601.9709382-CDS-H-elongata_contig52790:125..575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52790 126..575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52790.12593.1prot_H-elongata_contig52790.12593.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52790 126..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52790.12593.1

>prot_H-elongata_contig52790.12593.1 ID=prot_H-elongata_contig52790.12593.1|Name=mRNA_H-elongata_contig52790.12593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
ENRKLRYSLLQDTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK
KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQG
SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-elongata_contig52790:126..575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52790.12593.1 ID=mRNA_H-elongata_contig52790.12593.1|Name=mRNA_H-elongata_contig52790.12593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig52790:126..575- (Himanthalia elongata Himel1 dioecious)
GAAAACAGAAAACTTCGATATTCATTGCTCCAGGATACAATGGCTCGCAC
GAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCCGCGCAAGCAGC
TGGCAACCAAGGCTGCGCGCAAGTCTGCCCCCGCGACAGGTGGTGTGAAG
AAGCCCCACCGCTACAGGCCGGGCACCGTGGCTTTGCGTGAAATCCGCCG
TTATCAGAAGTCAACTGAGCTACTAATTCGTAAGCTGCCTTTCCAGCGTC
TGGTGCGCGAAATTGCCCAGGACTTCAAGAGTGACCTGCGTTTCCAGGGC
TCTGCCGTATTGGCCCTGCAGGAGGCCGCCGAGGCCTACCTTGTTGGTCT
TTTCGAAGACACCAACCTGTGCGCCATCCATGCCAAGCGAGTAACCATCA
TGCCTAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAGAGCGATCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52790:126..575-

>mRNA_H-elongata_contig52790.12593.1 ID=mRNA_H-elongata_contig52790.12593.1|Name=mRNA_H-elongata_contig52790.12593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig52790:126..575- (Himanthalia elongata Himel1 dioecious)
GAAAACAGAAAACTTCGATATTCATTGCTCCAGGATACAATGGCTCGCAC
GAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCCGCGCAAGCAGC
TGGCAACCAAGGCTGCGCGCAAGTCTGCCCCCGCGACAGGTGGTGTGAAG
AAGCCCCACCGCTACAGGCCGGGCACCGTGGCTTTGCGTGAAATCCGCCG
TTATCAGAAGTCAACTGAGCTACTAATTCGTAAGCTGCCTTTCCAGCGTC
TGGTGCGCGAAATTGCCCAGGACTTCAAGAGTGACCTGCGTTTCCAGGGC
TCTGCCGTATTGGCCCTGCAGGAGGCCGCCGAGGCCTACCTTGTTGGTCT
TTTCGAAGACACCAACCTGTGCGCCATCCATGCCAAGCGAGTAACCATCA
TGCCTAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAGAGCGATCGTAG
GAAAACAGAAAACTTCGATATTCATTGCTCCAGGATACAATGGCTCGCAC
GAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCCGCGCAAGCAGC
TGGCAACCAAGGCTGCGCGCAAGTCTGCCCCCGCGACAGGTGGTGTGAAG
AAGCCCCACCGCTACAGGCCGGGCACCGTGGCTTTGCGTGAAATCCGCCG
TTATCAGAAGTCAACTGAGCTACTAATTCGTAAGCTGCCTTTCCAGCGTC
TGGTGCGCGAAATTGCCCAGGACTTCAAGAGTGACCTGCGTTTCCAGGGC
TCTGCCGTATTGGCCCTGCAGGAGGCCGCCGAGGCCTACCTTGTTGGTCT
TTTCGAAGACACCAACCTGTGCGCCATCCATGCCAAGCGAGTAACCATCA
TGCCTAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAGAGCGATCGTAG
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