mRNA_H-elongata_contig52789.12592.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52789.12592.1
Unique NamemRNA_H-elongata_contig52789.12592.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52789.12592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52789contigH-elongata_contig52789:205..863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_000600.1
Exons2
Model size246
Cds size138
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52789.12592.1prot_H-elongata_contig52789.12592.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52789 205..756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.8668048-CDS-H-elongata_contig52789:204..2401622930861.8668048-CDS-H-elongata_contig52789:204..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52789 205..240 -
1691679601.943807-CDS-H-elongata_contig52789:204..2401691679601.943807-CDS-H-elongata_contig52789:204..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52789 205..240 -
1622930861.8814144-CDS-H-elongata_contig52789:654..7561622930861.8814144-CDS-H-elongata_contig52789:654..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52789 655..756 -
1691679601.9521675-CDS-H-elongata_contig52789:654..7561691679601.9521675-CDS-H-elongata_contig52789:654..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52789 655..756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.8984094-UTR-H-elongata_contig52789:756..8631622930861.8984094-UTR-H-elongata_contig52789:756..863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52789 757..863 -
1691679601.9607325-UTR-H-elongata_contig52789:756..8631691679601.9607325-UTR-H-elongata_contig52789:756..863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52789 757..863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52789.12592.1

>prot_H-elongata_contig52789.12592.1 ID=prot_H-elongata_contig52789.12592.1|Name=mRNA_H-elongata_contig52789.12592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MKFPPPPEAPAEEDTVIPSHILDAILDAPDEVARYDGIPSPNRDSV
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mRNA from alignment at H-elongata_contig52789:205..863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52789.12592.1 ID=mRNA_H-elongata_contig52789.12592.1|Name=mRNA_H-elongata_contig52789.12592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=659bp|location=Sequence derived from alignment at H-elongata_contig52789:205..863- (Himanthalia elongata Himel1 dioecious)
TGTCTGTCTTGCGTTATTTTGTCTCGTCTTGCCTCTTGATGTAATCTATT
CAGAGTCCCTTTTATCCCGTGGAACCCTTCGTACAAGAGTTGGAGGGAGA
TGACAACATGAAGTTCCCTCCTCCACCTGAGGCGCCGGCGGAGGAAGACA
CAGTGATCCCTTCTCACATACTTGATGCGATTCTGGATGCTCCCGACGAG
GTGGCGAGGGTAAGCGTCGAGGAGGTACGGTAGCCGTTATCGATAGGGCG
ATAGTGTGTCTTGACGAGGAAATATATACCACCGATCGATTCCTGGAGTC
TACAGCGCTTGGGTATGTGCAAGACGATCTCACACGAGTCGAGGGCACCC
TAGTAGAAAACTACATAATGCATCAAGCGAAGGAAAAAATATACCTTTGT
GCCTGGTGACAAAATTTGAAGTCTATGCGCTACATCGAAGGTTGAAAGCA
TGCTGGTAGGAAAGGCTTTCGCAGAAGTTTCTCTGCAGAAAGATGCAAGG
CTGGGATTTTTTCCCCATCTCCATTGACGAGCCAAGGCCCAGATTCTCCT
AACATATTGCGGTTGATCTTCTCGTATCCTACCGTGACCCTGGAAACCCG
CCGCTAAACGTCACGCGCCTCAGTACGACGGAATCCCTTCTCCAAACCGC
GACAGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig52789:205..863-

>mRNA_H-elongata_contig52789.12592.1 ID=mRNA_H-elongata_contig52789.12592.1|Name=mRNA_H-elongata_contig52789.12592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig52789:205..863- (Himanthalia elongata Himel1 dioecious)
ATGAAGTTCCCTCCTCCACCTGAGGCGCCGGCGGAGGAAGACACAGTGAT
CCCTTCTCACATACTTGATGCGATTCTGGATGCTCCCGACGAGGTGGCGA
GGATGAAGTTCCCTCCTCCACCTGAGGCGCCGGCGGAGGAAGACACAGTG
ATCCCTTCTCACATACTTGATGCGATTCTGGATGCTCCCGACGAGGTGGC
GAGGTACGACGGAATCCCTTCTCCAAACCGCGACAGCGTCTACGACGGAA
TCCCTTCTCCAAACCGCGACAGCGTC
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