mRNA_H-elongata_contig52740.12588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52740.12588.1
Unique NamemRNA_H-elongata_contig52740.12588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A6H5L606_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L606_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.840e-126
Identity = 199/267 (74.53%), Postives = 228/267 (85.39%), Query Frame = 1
Query:    1 ALAREMDSKREAFMGKWVMEG-WKGSQQEDMFYSALVCLVRNGLTDED-PELNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSE-------MEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRLVARGEDKGI 774
            ALAREM+SK   FM K   +G W+G+Q EDMFY AL+ LV++GLTDE  P L+GAYLNSY+RLMGI+VQEVGTRSTPAS+MVLKSFL+WEREIRKELTEPAW+ RPPDLVGSWAL+TSGWDGL+D+P+D S+        M D+GL+DLVV+F KDGTVQ+PVEKGVGL W+VEPGPTHLDT+YFEMIPAAPKV +S       AGAGGGTTL YTGYVDRGARIE+RFSKRF+KMTGRMTSV RG+ERPSTRFAMRLVARGE  G+
Sbjct:  292 ALAREMESKHTKFMTKCFGKGSWQGTQ-EDMFYHALINLVKHGLTDEGVPALSGAYLNSYERLMGILVQEVGTRSTPASEMVLKSFLAWEREIRKELTEPAWKSRPPDLVGSWALDTSGWDGLTDLPVDSSAAGGGTTDGMVDLGLSDLVVSFLKDGTVQIPVEKGVGLQWRVEPGPTHLDTIYFEMIPAAPKVKASSK-----AGAGGGTTLSYTGYVDRGARIEARFSKRFLKMTGRMTSVERGQERPSTRFAMRLVARGERIGL 552          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A836CDA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDA0_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.060e-58
Identity = 125/261 (47.89%), Postives = 161/261 (61.69%), Query Frame = 1
Query:    4 LAREMDSKREAFMGKWV--MEG--WKGSQQEDMFYSALVCLVRNGLTDEDPELNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDI-PLDGSSEMEDVGLND----LVVAFRKDGTVQVPVEKGV-GLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRLVAR 756
            LAREM SKR AFM KWV   +G  W+GSQ ED++Y AL+ L+ NGLT     L   + N+Y R++  +V+E+G R TPAS  VL SF++WE E+R+ L    W+  P DLVG WA+     D L D  P+   S             L V  ++DG+ ++P    V GL W+++PGPTHLDT+ FE+  AA        G     G   G  L YTGYVDRGARIE+RFS+R +KMTGR+T VVRG +RPSTRF+MRLV R
Sbjct:  195 LAREMGSKRTAFMTKWVGGAQGGEWEGSQ-EDVYYQALIELLSNGLTAGARGLRNPWANAYARVVAALVRELGARRTPASSRVLTSFVTWESELRRTLRSAGWDENPLDLVGVWAV-GDDMDLLPDYAPVAALSSXXXXXXXXXXXMLRVMLKRDGSAEIPDNGRVKGLRWRLDPGPTHLDTLRFEVRQAA--------GGGDALGGEEGALLSYTGYVDRGARIEARFSRRPLKMTGRLTRVVRGEQRPSTRFSMRLVER 445          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A4D9CMD2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMD2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.700e-42
Identity = 96/250 (38.40%), Postives = 128/250 (51.20%), Query Frame = 1
Query:    4 LAREMDSKREAFMGKWVMEGWKGSQQEDMFYSALVCLVRNGLTDEDPE-LNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSEMEDVG-LNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRL 747
            L  E+   +  F+ KWV  G      E ++Y AL+  +  GL    P  + G Y N+YQR    +VQE+GTRS      +  +F+ WE  +RK LT+  W+  P +L G W L  SG +      L GS      G      + FR+DGT++VP E G+   W  EPGPTHLDT+ FE+    P                    L YTGYVDRG RIE+RFSKR +KM GR+    RG  R S +F+M+L
Sbjct:  323 LTDELTKGKPGFLEKWV--GGDEGCDEAVYYGALIAYLTGGLEAPAPAAMGGGYSNAYQRFTTSLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDRHPKELTGQWTLVDSGPNPAGATTLPGSGAETGKGEQRSANLVFRRDGTLRVPPELGMDGTWSFEPGPTHLDTIRFELRQGTPD----------------NRVLCYTGYVDRGQRIETRFSKRPIKMKGRVVLRARGEARSSGKFSMQL 554          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: W7T252_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T252_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.740e-42
Identity = 97/253 (38.34%), Postives = 134/253 (52.96%), Query Frame = 1
Query:    4 LAREMDSKREAFMGKWVMEGWKGSQQEDMFYSALVCLVRNGLTDEDPE-LNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWD--GLSDIPLDGSS--EMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRL 747
            L  E+   +  F+ KWV  G +    E ++Y AL+  +  GL    P  + G Y N+YQR    +VQE+GTRS      +  +F+ WE  +RK LT+  W+  P +L G W L  SG +  G + +P  G+   + E    N   + FR+DGT++VP E G+   W  EPGPTHLDT+ FE+    P                    L YTGYVDRG RIE+RFSKR +KM GR+    RG  R S +F+M+L
Sbjct:  335 LTNELTKGKPGFLEKWV--GGEEGCDEAVYYGALIAYLTGGLEAPAPAAMGGGYSNAYQRFTTSLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDRHPKELTGQWTLVDSGPNPAGATTLPGPGAETGKGEQRSAN---LVFRRDGTLRVPPELGMDGTWSFEPGPTHLDTIRFELRQGTPD----------------NRVLCYTGYVDRGQRIETRFSKRPIKMKGRVVLRARGEARSSGKFSMQL 566          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S2UV57_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV57_9STRA)

HSP 1 Score: 150 bits (380), Expect = 5.890e-40
Identity = 93/267 (34.83%), Postives = 140/267 (52.43%), Query Frame = 1
Query:    1 ALAREMDSKREAFMGKWVMEGWKGSQQEDMFYSALVCLVRNG-------LTDEDP--------ELNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSEME----DVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLL-YTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAM 741
            ALA  + +       +W +       QE +FY A++ L+R+G       LT +          +L G+YLNS++RL+ ++V+ +GT +   S  VLK F +WE ++RK +TEP W+  P +L G W L            ++G + M+    D  +N  +V    DGTV+V  E G G+ W +EPGPTHLDTV F++                  G G   T+L Y GY+DRG R+E++FSK+ V+M GR+ +  RG  R +T F M
Sbjct:  112 ALAVSLQADLTTLTQEWQLAA---DSQEKVFYEAMLSLLRDGFDGAKSYLTSDSSLRVHNAVAKLKGSYLNSFERLVSLLVETIGTGAGITSSEVLKGFSTWETQVRKNVTEPRWDALPKELTGPWML------------MEGDAAMDFPGYDTEINQQIVYLNPDGTVKVDSESGEGIEWSLEPGPTHLDTVRFQVRAF---------------GTGPEETILNYVGYIDRGQRLETKFSKQPVRMKGRLITTFRGNVRSTTAFRM 348          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S2SL04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL04_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.270e-26
Identity = 74/230 (32.17%), Postives = 114/230 (49.57%), Query Frame = 1
Query:   70 GSQQEDMFYSALVCLVRNGLTDEDPELNGAYLNSYQRLMGIVVQEVGT----RSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPST--RFAM 741
            G+     ++ A+  L+++GL      L  +YL+++QRL+  VVQE+GT    R       +L  F  WERE+R  +T   W+  P D++G W L  S    L    +  ++      +    V  + DG V V   +G G+ W+++PGPTHLDT Y   +   P+   SD             T+ + GY+DRG R+ESR S R ++M+G + S     + P T  RF M
Sbjct:  370 GNGDATQYFLAMASLLQDGLKVRYDHLKPSYLDAFQRLLDRVVQEMGTTKLGRGRRPDLKMLSEFALWEREVRLNMTGSLWQEHPADMLGGWTLVESDDASLLSSTMSRNNARGSEPVGAAAVTLQPDGVVVVNSGEGTGISWRLDPGPTHLDTCYIT-VALEPE---SD------------NTVTFMGYIDRGQRLESRLSGRSIRMSGLIYSTGDEGDVPDTVSRFVM 583          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S4DB13_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB13_HETAK)

HSP 1 Score: 105 bits (261), Expect = 1.610e-23
Identity = 81/248 (32.66%), Postives = 114/248 (45.97%), Query Frame = 1
Query:   97 SALVCLVRNGLTDEDPE----------LNGAYLNSYQRLMGIVVQEVGT-----RSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWAL-----ETSGWDGLSDIPLDGSSEMEDVGLNDL-VVAFRKDGTVQVP------------VEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAM 741
            +A +  VR  L ++DP             GAY N+Y RL   +  E+G      +  PAS  V  SF SWERE+RK  T   W+P+P  L G W++     ETSG             E  D   N L V+  + DG+V +              E+  GL W++ PGPTHLDT+ F++                 +G      L YT Y+DRG R+E+ FS R ++  GR+T  +RG+E+    F M
Sbjct:    9 AAFLRAVRALLAEDDPARAAAEGGRALTTGAYRNAYDRLAAWLFGELGAAGLGLQGVPASYRVTASFTSWERELRKTNTAKFWDPQPEYLWGEWSIGDDRSETSGRRPF---------EYVDDPENKLTVIKLKSDGSVHLEGGXXXXXXXXXKQERLQGLRWELTPGPTHLDTLTFQVA----------------SGQNNNRLLTYTSYIDRGQRLETMFSGRPIRAKGRVTVPLRGKEKIVNSFFM 231          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A6U4GLT9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GLT9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.170e-22
Identity = 83/268 (30.97%), Postives = 135/268 (50.37%), Query Frame = 1
Query:    4 LAREMDSKREAFMGKWVMEGWK-GSQQEDM--FYSALVCLVRNGLTD----EDPELNGAYL--NSYQRLMGIVVQEVGTR---STPASQMVLKSFLSWEREIRKELT-EPAWEPRPPDLVGSWALETSGWD-GLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGR---ERPSTRFAMRLVAR 756
            +A  + ++R+ F+  + + G + G+ + D+  FY ALV L  +G+      E+     A+   NS QR++G++VQE+G R   S      +   F++WE E+R+ +T    W+P P DL G+W L         + +P +   E   V L   + A    GTV+      + L W + PGPTHLDT   +       + +SD  A           L +TGY+DRG R+E++ S R V+M+GR+    + R   +RP  +FAM + A+
Sbjct:  251 MAAGLKAQRQGFLNDYGLAGAEEGTPESDIAWFYDALVDLCESGMATAVALEESSYGRAFCWANSMQRILGLLVQEMGLRLEGSETLEDPIFTRFVNWESELRQNITGNYGWDPTPKDLEGTWCLGAFATSYTTTSMPAELGGEACRVRL---LFASDGKGTVKSLSGPDLPLRWSLSPGPTHLDTCSIQ-------IGTSDDNA----------DLFFTGYIDRGQRLETKLSGRSVRMSGRVVRRRKDRLGVDRPMGKFAMTMDAK 498          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7R9UG48_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG48_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.710e-21
Identity = 79/271 (29.15%), Postives = 129/271 (47.60%), Query Frame = 1
Query:    4 LAREMDSKREAFMGKWVMEGW------KGSQQEDM--FYSALVCLVRNGLTDEDPELNGA------YLNSYQRLMGIVVQEVGTRSTPASQM---VLKSFLSWEREIRKELTEP-AWEPRPPDLVGSWALE--TSGWDGLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVG--LLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVR---GRERPSTRFAM 741
            +A  +  +R+ F+  + +  +      K + + D   FY A++ L   G+     +   A      + N+ QRL+G++VQE+G R   A  +   +   F+SWE ++R+ +T    W   P DL G+W+L   T+ +   S      S+E +    + + + F  DG   V +  G      W + PGPTHLDT          ++ + D  A           L +TGY+DRG R+E++FSKR V M+GR+T   R   G  RP  RF++
Sbjct:  231 MAERLKEQRDTFLRDYQLGDFADTRIDKSTTESDSVWFYDAMIDLCETGMATAIAQEEAARARSFCWANALQRLLGLLVQEMGLRLEGAESIEDPIFTRFVSWESQLRRNITSNYGWNKHPRDLQGTWSLSSFTTSYARTSQ----SSAEQQIGDASTMRLVFEADGKGTVSMSSGTNQPFAWSLSPGPTHLDTCNI-------RISTQDDSA----------DLFFTGYIDRGQRLETKFSKRPVLMSGRVTRRRRDGTGVARPMGRFSL 480          
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S2NUN1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUN1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.320e-17
Identity = 77/262 (29.39%), Postives = 123/262 (46.95%), Query Frame = 1
Query:    4 LAREMDSKREAFMGKWV------MEGWKGSQQEDMFYSALVCLVRN-----GLTDEDPELN--GAYLNSYQRLMGIVVQEVGTRSTPASQMVLKS------------FLSWEREIRKELTEPAWEPRPPDLVGSWAL--ETSGWDGLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVR 708
            L+  +++ + AF+ +W       ++  + S+    F++ LV L+R       +++ +P L    +Y NSY+RL+  +V+       P S   + S            F  WE  +RK    P     P DL+G W +  E  G               E +G++  +V F+ DG V V     +GL W+++PGPTHLDT  F+++       S D           G  L Y G+VDRGAR+ESRFS+R +K+ G +T  +R
Sbjct:  219 LSETLEADKAAFIQRWYPGTSYDVDVTEESRPGVQFFNNLVFLLRKCYSEGSISELEPPLPICASYANSYERLVANLVELGSGYINPWSLQKILSVLPKTPTEEFGRFAKWETSLRK--ISPDINAYPSDLIGKWQVQDEVGG---------------ETIGVS--IVEFQPDGQVAVSPPM-LGLRWRLDPGPTHLDTCTFQVL-------SED-----------GAILQYRGFVDRGARLESRFSRRSIKIQGAVTFQMR 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L606_9PHAE1.840e-12674.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDA0_9STRA1.060e-5847.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CMD2_9STRA1.700e-4238.40Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T252_9STRA2.740e-4238.34Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2UV57_9STRA5.890e-4034.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SL04_9STRA5.270e-2632.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4DB13_HETAK1.610e-2332.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4GLT9_9STRA4.170e-2230.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UG48_9STRA4.710e-2129.15Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2NUN1_9STRA5.320e-1729.39Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52740contigH-elongata_contig52740:500..3215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005350.1
Exons5
Model size792
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52740.12588.1prot_H-elongata_contig52740.12588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52740 3102..3215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.4826276-UTR-H-elongata_contig52740:499..5771622930861.4826276-UTR-H-elongata_contig52740:499..577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 500..577 +
1691679601.852966-UTR-H-elongata_contig52740:499..5771691679601.852966-UTR-H-elongata_contig52740:499..577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 500..577 +
1622930861.50073-UTR-H-elongata_contig52740:1032..11311622930861.50073-UTR-H-elongata_contig52740:1032..1131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 1033..1131 +
1691679601.8633845-UTR-H-elongata_contig52740:1032..11311691679601.8633845-UTR-H-elongata_contig52740:1032..1131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 1033..1131 +
1622930861.5144653-UTR-H-elongata_contig52740:1618..17441622930861.5144653-UTR-H-elongata_contig52740:1618..1744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 1619..1744 +
1691679601.875255-UTR-H-elongata_contig52740:1618..17441691679601.875255-UTR-H-elongata_contig52740:1618..1744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 1619..1744 +
1622930861.5341787-UTR-H-elongata_contig52740:2118..23711622930861.5341787-UTR-H-elongata_contig52740:2118..2371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 2119..2371 +
1691679601.886846-UTR-H-elongata_contig52740:2118..23711691679601.886846-UTR-H-elongata_contig52740:2118..2371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 2119..2371 +
1622930861.5896091-UTR-H-elongata_contig52740:2979..31011622930861.5896091-UTR-H-elongata_contig52740:2979..3101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 2980..3101 +
1691679601.8943717-UTR-H-elongata_contig52740:2979..31011691679601.8943717-UTR-H-elongata_contig52740:2979..3101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52740 2980..3101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.6059701-CDS-H-elongata_contig52740:3101..32151622930861.6059701-CDS-H-elongata_contig52740:3101..3215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52740 3102..3215 +
1691679601.902036-CDS-H-elongata_contig52740:3101..32151691679601.902036-CDS-H-elongata_contig52740:3101..3215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52740 3102..3215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52740.12588.1

>prot_H-elongata_contig52740.12588.1 ID=prot_H-elongata_contig52740.12588.1|Name=mRNA_H-elongata_contig52740.12588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MTGRMTSVVRGRERPSTRFAMRLVARGEDKGITSYRE*
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mRNA from alignment at H-elongata_contig52740:500..3215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52740.12588.1 ID=mRNA_H-elongata_contig52740.12588.1|Name=mRNA_H-elongata_contig52740.12588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2716bp|location=Sequence derived from alignment at H-elongata_contig52740:500..3215+ (Himanthalia elongata Himel1 dioecious)
GCGCTCGCCCGGGAGATGGACTCCAAGCGGGAGGCGTTTATGGGAAAATG GGTCATGGAGGGCTGGAAGGGGAGTCAGGTGCGGGGATGGCAAACGGCGG TCAGACTGAGAGACATTACTGGTACCACCTTTGGTCAATGGCCGCCTTTG TGGAATACCAAAAACACCTTTTATTGCTGCGCGTGTTTTAGTCGTTGTTT TGGTTGAAATATCTCTTTTACTCCCTATCCTTGTTGTTGACGCTTGTACT CGCTTTCACGTTTGTCTCGTACTCCACAGAGGCGCTTTCTATGACGCGTG CAAGCATAATTTATGTTGTCGTCTTTCAGAGAGAGGCCTATCGTTTCACG GGCCCCGACTTGTGACTCCTTCCCTTTTGTTACTCTTCCCCCTCCCCCAT TTTTTTTGCTGTCTTGGCCGTTGGCTGATCGTGTGTCGGTGGTCCCTTGC GCCCTGCGCCTTCGTCCCGTCTTTCTGAAATATCTCCAAACGACATCGCT CGCCTCCGTGCGCGCGCGCACACGATTTTCAAGCAGGAAGACATGTTCTA CAGCGCCTTGGTGTGCTTGGTAAGGAACGGGCTCACGGACGAAGACCCAG AGTTGAACGGCGCTTACCTCAACTCGTACCAGGTGTGACAACCAAACTCG TTTCGGGAGCGTCGCGCGCTGAGGGTCATTTAAGATATATTAATGAGTTC TGGAGGCGCGAAGGGTTGCGGCTGCAGCGCCCTTTTTTGCGCGAAATACC ATTCTCGGACATGTGGGGCTTTAAAGTTTACGTAAATATCCGTGCTGTTA GAGAGGTGGCTGGGTCTGATAGCATCAGAGATCTTCTGAGCGCTATCGTA ACCGCGCTTGATGTAGACGCCTAGAAGCGATGGTAGAGCCGTTCGGCATG TTCCGTCGTTAACCTCGAAGGATTTCGACGCTCTCAGTCGTTTCGGTTCC CGTCTGTTTATTAAGTATTGGAGGCGTGTGGGGGGGCGGGGGAAGGGGAT AAAGCGCATCCAAGCATGTGGCTTTGCGCAGAGGTCATCGCGCGTTGCCT CGTGCTTGATTGCCGATGTCGTGACCAATCATGCGGACGCATGTGCCAAC GATGAACGGCGCACTACAGAGGCTGATGGGGATCGTGGTGCAAGAGGTGG GCACAAGGAGCACCCCGGCCAGCCAGATGGTGCTCAAGAGCTTCCTCTCG TGGGAGAGAGAGATCCGCAAGGAGCTCACAGAGCCCGCGTGGGAGGTGAG CGACCGCTTCTCCCCGTTGCAGTGGGGGGGGGGGGGGGCGATTTTTTTTT TTTGTTTTGGGGCGGGGGGGGGGTTAAACGGGGGGCAACGGGCCGTATTT TTTTTTNNNNNNNNNNGGGGGGGGGCGGGCGCGAGGGGGCCCTGAGGCGG GGGGGGGGGGGGGGGGGCGCCCCGCCCCCCGGGGGGGGGGGGGGGGGGGG GGGGGCATTTTATTTTCGCATCTGGGGCGCGAGGGGGGTTTAACGGAGCG GCATCGAGGATAATATTTCCTTGCTCCCGCCTGTGCTAGCCTTGCTAAAC ACGCCCTTGTTAACCCTGACTCTCCGACCAATTATATTTCCCGGACAAAA TCGAAACACAAAAATATAGCCGAGGCCGCCGGACCTGGTGGGATCCTGGG CGTTGGAGACGTCCGGCTGGGATGGCCTCTCCGACATCCCTCTAGACGGG TCGTCGGAGATGGAAGACGTGGGTTTGAACGACCTGGTGGTGGCGTTCCG AAAGGACGGGACCGTGCAGGTGCCAGTCGAGAAGGGTGTGGGGCTGCTGT GGAAGGTGGAGCCAGGCCCGACACACCTCGACACGGTGTACTTCGAGATG ATACCTGCCGCACCCAAGGTATGTGACCGTGAAGGCCATTCGTGGAGGTC GTGAGTGGGGCGGCGGTGCTCGTGCGCCGTCGTGGTCCAGCCTTTCCCCA TCGCTGCGGGAACGTAGCTAACACGGTATTCCTATAATAGCTAAATAATA TGTAACAATTCCCCTCCCGGGATGTAGGTATCTAAACGATTTTTCTTTGC AACCATGCTGACGGCATGTACGCAGCAGGAGCAACAACAACAAAGGCTCC AAAAGAACCCGTCTGATTTGTGTACGGTCTCGCGCTATAGAAGCGTACCA CACACACGTCTCCCAAATATCTACTGCTATTGTAGCGCGGTTAACTGCCT CTCTTGTGCCTCTTTCGCCGTTAGAGAAGGAGAAAAAAAATGGGGGTTAT GCTACAGTGCAGGATAACCTGTAGCACCTACCTAAAGCAATCGCTTTCTT ATTGAAATAATACCTTGAAACGCGACTGGACTCCCTGCTACTCGTGCGTT CCCCGGCCACAGTCTGTTGGAGGGAAATGAAGGGATAACATGGATGTTAG CACCTTCGCCTTCTCGTGCGGAAACTCTTGCCCCCCCTCCTCGCTTCTTT CTGTTGCGCTTTGAACGTAGGACAACCAAGGATCGTCCGACGTCGGGGCG GCGGCGGGGGCGGGTGCGGGTGGTGGCACGACCCTGCTATACACGGGCTA CGTGGACCGAGGGGCACGGATCGAGTCGCGATTCTCGAAGCGATTCGTTA AAATGACGGGCCGCATGACTTCGGTTGTGAGGGGCCGGGAGCGACCATCC ACGCGCTTTGCGATGAGGCTCGTCGCTAGGGGAGAGGACAAAGGAATCAC TTCGTATCGCGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig52740:500..3215+

>mRNA_H-elongata_contig52740.12588.1 ID=mRNA_H-elongata_contig52740.12588.1|Name=mRNA_H-elongata_contig52740.12588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig52740:500..3215+ (Himanthalia elongata Himel1 dioecious)
ATGACGGGCCGCATGACTTCGGTTGTGAGGGGCCGGGAGCGACCATCCAC
GCGCTTTGCGATGAGGCTCGTCGCTAGGGGAGAGGACAAAGGAATCACTT
CGTATCGCGAGTAAATGACGGGCCGCATGACTTCGGTTGTGAGGGGCCGG
GAGCGACCATCCACGCGCTTTGCGATGAGGCTCGTCGCTAGGGGAGAGGA
CAAAGGAATCACTTCGTATCGCGAGTAA
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