mRNA_H-elongata_contig52707.12584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52707.12584.1
Unique NamemRNA_H-elongata_contig52707.12584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52707.12584.1 vs. uniprot
Match: D7G6W6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W6_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.060e-46
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 DFEDSSWSVGIQWRDQPYKIQTTKVAFKTDGSVVWLDKGKGSWRLRTKSRDLVFYRDFLLNWNGKRIFSAKLLTNTCDLYLEGQVKGWAPFKSLEVMGTFQAVRR 315
            DF+D++W+V IQW    Y+++TTKVA K DG VVWLDKGKGSW LRTKSRD+  YR+F LNW G RIFSAKLL NTCD+YL G +KGW PF  L  MGT+QAVRR
Sbjct:  179 DFQDTTWTVAIQWNHSKYEVKTTKVALKADGEVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRR 283
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BLAST of mRNA_H-elongata_contig52707.12584.1 vs. uniprot
Match: A0A835YQD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.050e-34
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    1 DFEDSSWSVGIQWRDQPYKIQTTKVAFKTDGSVVWLDKGKGSWRLRTKSRDLVFYRDFLLNWNGKRIFSAKLLTNTCDLYLEGQVKGWAPFKSLEVMGTFQAVR 312
            DF +S+W+V I W  +  K Q TKV  + DG VVWLDKGKGSWRL TKSR L FYRDF L W GKRIFS +LL N  + YLEG+VKGW P+  L+ MG +QA+R
Sbjct:  181 DFANSTWAVAILWGARR-KPQMTKVFLRDDGKVVWLDKGKGSWRLDTKSRSLGFYRDFFLGWKGKRIFSTRLLDNCNEHYLEGEVKGWGPWFPLKWMGQWQAIR 283
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BLAST of mRNA_H-elongata_contig52707.12584.1 vs. uniprot
Match: A0A7S2BQ16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQ16_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.080e-20
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    4 FEDSSWSVGIQWRDQPYKIQTTKVAFKTDGSVVWLDKGK-GSWRLRTKSRDLVFYRDFLLNWNGKRIFSAKLLTNTCDLYLEGQVKGWAPFKSLEVMGTFQAVR 312
            F+ S W VGI W+D    IQ T +  K +    W   GK G+W +  K     F RD++  WNGKRIFSA L     ++YLEG V+GWAPF   EVMG +QA+R
Sbjct:  131 FKGSEWKVGIMWKDNK-NIQETWIRCKEEFDCEWGTGGKEGTWDVDGKI--FTFTRDYVGGWNGKRIFSAPLRDRNSEVYLEGLVRGWAPFTPAEVMGQWQAIR 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52707.12584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6W6_ECTSI1.060e-4667.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQD3_9STRA1.050e-3460.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BQ16_9STRA7.080e-2046.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52707contigH-elongata_contig52707:2522..3025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.4e-37
Seed eggNOG ortholog2880.D7G6W6
EggNOG OGs2CZXD@1,2SC0X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011980.1
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.844204-CDS-H-elongata_contig52707:2521..25931622930860.844204-CDS-H-elongata_contig52707:2521..2593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52707 2522..2593 +
1691679601.5225952-CDS-H-elongata_contig52707:2521..25931691679601.5225952-CDS-H-elongata_contig52707:2521..2593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52707 2522..2593 +
1622930860.8649776-CDS-H-elongata_contig52707:2779..30251622930860.8649776-CDS-H-elongata_contig52707:2779..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52707 2780..3025 +
1691679601.5567393-CDS-H-elongata_contig52707:2779..30251691679601.5567393-CDS-H-elongata_contig52707:2779..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52707 2780..3025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52707.12584.1prot_H-elongata_contig52707.12584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52707 2522..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52707.12584.1

>prot_H-elongata_contig52707.12584.1 ID=prot_H-elongata_contig52707.12584.1|Name=mRNA_H-elongata_contig52707.12584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
DFEDSSWSVGIQWRDQPYKIQTTKVAFKTDGSVVWLDKGKGSWRLRTKSR
DLVFYRDFLLNWNGKRIFSAKLLTNTCDLYLEGQVKGWAPFKSLEVMGTF
QAVRR*
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mRNA from alignment at H-elongata_contig52707:2522..3025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52707.12584.1 ID=mRNA_H-elongata_contig52707.12584.1|Name=mRNA_H-elongata_contig52707.12584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig52707:2522..3025+ (Himanthalia elongata Himel1 dioecious)
GACTTCGAAGACTCTTCGTGGTCGGTGGGGATTCAGTGGAGGGACCAACC
CTACAAGATACAGACGACGAAGGTTGGTCAACCGCACTCTTACCGTTGCG
TTTTGCTGCCTAAATATTGTTGGCAATTGATTGATTTGCGGTGCAGTTCA
CACGCCAGCGGGGGTAGTAGCTGCCCGCCCGCCCGCCCGCCCCGTTAATT
CGTGTTTGGTTCGTTGGGACGAAACATAAATGTAGCTTCTTTGTTGCGAC
GGCCGCAGGTCGCCTTCAAGACCGACGGTTCAGTGGTTTGGCTTGACAAG
GGAAAGGGAAGCTGGAGGCTGCGCACGAAGAGCCGTGACCTGGTGTTTTA
CCGCGACTTCTTGCTGAACTGGAACGGCAAGCGGATATTCTCCGCCAAGC
TTTTGACCAACACGTGTGACTTGTACCTGGAAGGACAGGTCAAAGGCTGG
GCGCCCTTCAAGTCGCTGGAAGTCATGGGCACTTTCCAAGCCGTGCGCAG
GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig52707:2522..3025+

>mRNA_H-elongata_contig52707.12584.1 ID=mRNA_H-elongata_contig52707.12584.1|Name=mRNA_H-elongata_contig52707.12584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig52707:2522..3025+ (Himanthalia elongata Himel1 dioecious)
GACTTCGAAGACTCTTCGTGGTCGGTGGGGATTCAGTGGAGGGACCAACC
CTACAAGATACAGACGACGAAGGACTTCGAAGACTCTTCGTGGTCGGTGG
GGATTCAGTGGAGGGACCAACCCTACAAGATACAGACGACGAAGGTCGCC
TTCAAGACCGACGGTTCAGTGGTTTGGCTTGACAAGGGAAAGGGAAGCTG
GAGGCTGCGCACGAAGAGCCGTGACCTGGTGTTTTACCGCGACTTCTTGC
TGAACTGGAACGGCAAGCGGATATTCTCCGCCAAGCTTTTGACCAACACG
TGTGACTTGTACCTGGAAGGACAGGTCAAAGGCTGGGCGCCCTTCAAGTC
GCTGGAAGTCATGGGCACTTTCCAAGCCGTGCGCAGGTAAGTCGCCTTCA
AGACCGACGGTTCAGTGGTTTGGCTTGACAAGGGAAAGGGAAGCTGGAGG
CTGCGCACGAAGAGCCGTGACCTGGTGTTTTACCGCGACTTCTTGCTGAA
CTGGAACGGCAAGCGGATATTCTCCGCCAAGCTTTTGACCAACACGTGTG
ACTTGTACCTGGAAGGACAGGTCAAAGGCTGGGCGCCCTTCAAGTCGCTG
GAAGTCATGGGCACTTTCCAAGCCGTGCGCAGGTAA
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