mRNA_H-elongata_contig5267.12580.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5267.12580.1
Unique NamemRNA_H-elongata_contig5267.12580.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5267.12580.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.640e-23
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:   43 EQALASYKCAVRARPRFISAWREISACYHILGHFHASVVALDCGLRAAG---FNDEGVVGP-----AAAAPLHLQSAANKLFL-PGRAKEGLRSVEEAFRAGRGGVVGYILRGLLNTRLGKGTLAKQAFGKAKE--LEPTIADFIDAI 453
            E A+  YK A+R +PR +  WRE++ACY +    HA+  AL+CG +AAG     D    G      A AAPL+LQ AA  L + PG    GL +V +AFR G+GG VG++LRGLLN+ LGK +LA  +F KA++  L+P +A   D +
Sbjct: 1548 EDAIKRYKLALREQPRALVGWRELAACYELSNQHHAAAAALECGAQAAGPADSVDSSSSGKRRSVSATAAPLYLQMAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLNSGLGKDSLAAGSFAKARDAGLDPAVAALADKV 1695
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BLAST of mRNA_H-elongata_contig5267.12580.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.420e-21
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 1 
Query:   43 EQALASYKCAVRARPRFISAWREISACYHILGHFHASVVALDCGLRAAGFNDEGVVGP--------AAAAPLHLQSAANKLFL-PGRAKEGLRSVEEAFRAGRGGVVGYILRGLLNTRLGKGTLAKQAFGKAKE--LEPTIADFIDAI 453
            E A+  YK A+R  PR +  WRE++ CY +    +A+  AL+CG +AAG    G            A AAPL+LQ AA  L + PG    GL +V +AFR G+GG VG++LRGLL + LGK +LA  +F KA+E  L+P +A   D +
Sbjct: 1156 EDAIKRYKLALREEPRALVGWRELAVCYQLSNQHNAATAALECGAQAAGPAGSGDCASSGKRRSVSATAAPLYLQLAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLYSGLGKDSLAAGSFSKAREAGLDPAVAALADKV 1303
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5267.12580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI2.640e-2344.59Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JG00_9PHAE2.420e-2142.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5267contigH-elongata_contig5267:8160..9360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categorymitochondrion
Exons2
Model size821
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5267.12580.1prot_H-elongata_contig5267.12580.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5267 8860..9360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.4851787-UTR-H-elongata_contig5267:8159..84741622930860.4851787-UTR-H-elongata_contig5267:8159..8474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5267 8160..8474 -
1691679601.3975961-UTR-H-elongata_contig5267:8159..84741691679601.3975961-UTR-H-elongata_contig5267:8159..8474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5267 8160..8474 -
1622930860.5102425-UTR-H-elongata_contig5267:8855..88591622930860.5102425-UTR-H-elongata_contig5267:8855..8859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5267 8856..8859 -
1691679601.4118392-UTR-H-elongata_contig5267:8855..88591691679601.4118392-UTR-H-elongata_contig5267:8855..8859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5267 8856..8859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.5283742-CDS-H-elongata_contig5267:8859..93601622930860.5283742-CDS-H-elongata_contig5267:8859..9360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5267 8860..9360 -
1691679601.4211202-CDS-H-elongata_contig5267:8859..93601691679601.4211202-CDS-H-elongata_contig5267:8859..9360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5267 8860..9360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5267.12580.1

>prot_H-elongata_contig5267.12580.1 ID=prot_H-elongata_contig5267.12580.1|Name=mRNA_H-elongata_contig5267.12580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
LAAARTSLCARRAGEQALASYKCAVRARPRFISAWREISACYHILGHFHA
SVVALDCGLRAAGFNDEGVVGPAAAAPLHLQSAANKLFLPGRAKEGLRSV
EEAFRAGRGGVVGYILRGLLNTRLGKGTLAKQAFGKAKELEPTIADFIDA
IAAASVQAQGSASSAD*
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mRNA from alignment at H-elongata_contig5267:8160..9360-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5267.12580.1 ID=mRNA_H-elongata_contig5267.12580.1|Name=mRNA_H-elongata_contig5267.12580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1201bp|location=Sequence derived from alignment at H-elongata_contig5267:8160..9360- (Himanthalia elongata Himel1 dioecious)
CTGGCCGCGGCAAGAACGTCCCTCTGCGCGAGGCGGGCGGGCGAGCAAGC
TCTGGCGAGCTATAAGTGCGCCGTTCGGGCGCGCCCGCGATTTATCTCAG
CCTGGCGTGAGATTTCGGCATGCTACCACATCCTCGGTCACTTCCACGCC
TCGGTTGTCGCGTTAGACTGCGGATTGCGCGCCGCCGGCTTCAACGATGA
AGGGGTGGTGGGTCCAGCTGCGGCTGCTCCGCTCCACTTGCAGTCTGCGG
CGAACAAGCTTTTTCTTCCCGGGCGCGCGAAGGAAGGCCTGAGGTCCGTA
GAGGAGGCGTTCCGCGCCGGGAGGGGGGGGGTCGTTGGGTATATCTTGAG
GGGCCTCCTGAACACGCGCCTGGGGAAGGGCACCCTGGCGAAGCAAGCAT
TCGGGAAGGCGAAAGAGCTCGAACCCACGATCGCTGACTTTATCGATGCG
ATTGCTGCCGCCTCGGTTCAGGCGCAGGGATCGGCATCATCAGCTGACTA
GCGAGGTGCGCTCCCGACGATTCGTGTTACTTTCGGATGTTTTTAACTCT
TGAGCTTAAGTACTCATACTTCAAAGAAACTGATGTGTCAGTTGATTAGA
TTACTCTTCTTGACGGAGGAACGCGTTCTCCAAAGATTAGCGTGGAGCGG
AACGGATTGCAGACCCCCGTTATATAATAAAATCCCTGTTAGAAGGCACA
GCTTGCCAAGTGCTAAGTCTCCGCTCCCCATACACCAATACCTGCCGCTG
TCCCCTGGATGCCGTCAAATGAATCCTTTTGATGTCGTCAAATAAGCGCG
ATTCAACATTTTCGTGTTGCGGCGAATGGGCGAGTTCGTGCTGATTGGGT
CGATCCCAAACCCTCCCCGTCTGGTTTCCTGAGCAGGGCATGCGTGGCGG
AACGCGATGTATTGCCGATGACCGCTGTACCGTCGGGAAGATTGGGGCGG
AAACGATAAATAATAGGCCGACTGCGTCAAGAGGGACGTCAATATTTTGT
TATTTGGGAGGACAATGCTACAGGGCAAAATAGAGTTTAGGAGAGAAAAA
GGAGTCGAGCTCTAGATAGAGAAAAAATCGAGGTATCATTCGGCTATAAT
ATTGTTTGAGTGGTAAGGTACTGGAGCGAGAGAAAAAGTGTGGGCGCATT
GTTTTTTGTTTTTTTATATCGTTCGCACTTTACATTCAGTAATAGTTAAT
G
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Coding sequence (CDS) from alignment at H-elongata_contig5267:8160..9360-

>mRNA_H-elongata_contig5267.12580.1 ID=mRNA_H-elongata_contig5267.12580.1|Name=mRNA_H-elongata_contig5267.12580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig5267:8160..9360- (Himanthalia elongata Himel1 dioecious)
CTGGCCGCGGCAAGAACGTCCCTCTGCGCGAGGCGGGCGGGCGAGCAAGC
TCTGGCGAGCTATAAGTGCGCCGTTCGGGCGCGCCCGCGATTTATCTCAG
CCTGGCGTGAGATTTCGGCATGCTACCACATCCTCGGTCACTTCCACGCC
TCGGTTGTCGCGTTAGACTGCGGATTGCGCGCCGCCGGCTTCAACGATGA
AGGGGTGGTGGGTCCAGCTGCGGCTGCTCCGCTCCACTTGCAGTCTGCGG
CGAACAAGCTTTTTCTTCCCGGGCGCGCGAAGGAAGGCCTGAGGTCCGTA
GAGGAGGCGTTCCGCGCCGGGAGGGGGGGGGTCGTTGGGTATATCTTGAG
GGGCCTCCTGAACACGCGCCTGGGGAAGGGCACCCTGGCGAAGCAAGCAT
TCGGGAAGGCGAAAGAGCTCGAACCCACGATCGCTGACTTTATCGATGCG
ATTGCTGCCGCCTCGGTTCAGGCGCAGGGATCGGCATCATCAGCTGACTA
GCTGGCCGCGGCAAGAACGTCCCTCTGCGCGAGGCGGGCGGGCGAGCAAG
CTCTGGCGAGCTATAAGTGCGCCGTTCGGGCGCGCCCGCGATTTATCTCA
GCCTGGCGTGAGATTTCGGCATGCTACCACATCCTCGGTCACTTCCACGC
CTCGGTTGTCGCGTTAGACTGCGGATTGCGCGCCGCCGGCTTCAACGATG
AAGGGGTGGTGGGTCCAGCTGCGGCTGCTCCGCTCCACTTGCAGTCTGCG
GCGAACAAGCTTTTTCTTCCCGGGCGCGCGAAGGAAGGCCTGAGGTCCGT
AGAGGAGGCGTTCCGCGCCGGGAGGGGGGGGGTCGTTGGGTATATCTTGA
GGGGCCTCCTGAACACGCGCCTGGGGAAGGGCACCCTGGCGAAGCAAGCA
TTCGGGAAGGCGAAAGAGCTCGAACCCACGATCGCTGACTTTATCGATGC
GATTGCTGCCGCCTCGGTTCAGGCGCAGGGATCGGCATCATCAGCTGACT
AG
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