mRNA_H-elongata_contig52665.12579.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52665.12579.1
Unique NamemRNA_H-elongata_contig52665.12579.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52665.12579.1 vs. uniprot
Match: D8LHU9_ECTSI (Diacylglycerol kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU9_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 4.600e-73
Identity = 118/190 (62.11%), Postives = 137/190 (72.11%), Query Frame = 1 
Query:    1 VRLFSLAIAASITSSIISRTRSGLLKFPSRTPAAVVDP--YTPGKHSWVAARSRWDPHHCSICSGVIAWVSDSGVRCQICGSHAHTECSKRAHKEGFACKALCRSDMEVAHKRFFDPQGKSGQGWGDEVCGAGPIDEEGKKPSPPVVMKHQWMRGSIDDSRRCLGCGGSCAGSGVSRQRGFFCAWCKEQV 564
            +RL SLAIAASI +S+I+RT   LLK PSR   AV DP  YTPG+H+WVAA SRWDPH+CS+CS  IAW SD+GVRCQICGSHAH  CSKRAHKEGF CK LC +D+E++HKR + P  ++     DE        E      PP VM+HQWMRGSIDDS+ C  CGGSCAGSG + Q GF CAWCK QV
Sbjct:   95 IRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPSSYTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSADVEMSHKRLYHPLEEAE----DEDXXXXXXPEXXXX--PPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCAWCKLQV 278
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BLAST of mRNA_H-elongata_contig52665.12579.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 2.760e-69
Identity = 116/190 (61.05%), Postives = 134/190 (70.53%), Query Frame = 1 
Query:    1 VRLFSLAIAASITSSIISRTRSGLLKFPSRTPAAVVDP--YTPGKHSWVAARSRWDPHHCSICSGVIAWVSDSGVRCQICGSHAHTECSKRAHKEGFACKALCRSDMEVAHKRFFDPQGKSGQGWGDEVCGAGPIDEEGKKPSPPVVMKHQWMRGSIDDSRRCLGCGGSCAGSGVSRQRGFFCAWCKEQV 564
            +RL SLAIAASI +S+I+RT   LLK PSR   AV DP  YTPG+H+WVAA SRWDPH+CS+CS  IAW SD+GVRCQICGSHAH  CSKRAHKEG  CK LC +D+E +HKR + P  ++     DE               PP VM+HQWMRGSIDDS+ C  CGGSCAGSG + Q GF CAWCK QV
Sbjct:  105 IRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPSSYTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGLGCKTLCSADVETSHKRLYHPLEEAE----DEXXXX--XXXPXXXXXPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCAWCKLQV 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52665.12579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU9_ECTSI4.600e-7362.11Diacylglycerol kinase (Partial) (Fragment) n=1 Tax... [more]
A0A6H5LB27_9PHAE2.760e-6961.05Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52665contigH-elongata_contig52665:808..3616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue4.1e-61
Seed eggNOG ortholog2880.D8LHU9
Preferred nameDGKK
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
GOsGO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006793,GO:0006796,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009611,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0023052,GO:0030168,GO:0032501,GO:0035556,GO:0042060,GO:0044237,GO:0044238,GO:0044255,GO:0044464,GO:0046339,GO:0046486,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0071704,GO:0071944
EggNOG free text desc.diacylglycerol kinase activity
EggNOG OGsKOG1170@1,KOG1170@2759
EC2.7.1.107
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptiondiacylglycerol kinase
Ec32 orthologEc-18_000550.1
Exons5
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52665.12579.1prot_H-elongata_contig52665.12579.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52665 808..3616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.3613822-CDS-H-elongata_contig52665:807..9201622930860.3613822-CDS-H-elongata_contig52665:807..920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 808..920 +
1691679601.3179138-CDS-H-elongata_contig52665:807..9201691679601.3179138-CDS-H-elongata_contig52665:807..920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 808..920 +
1622930860.3795042-CDS-H-elongata_contig52665:1370..14851622930860.3795042-CDS-H-elongata_contig52665:1370..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 1371..1485 +
1691679601.3448348-CDS-H-elongata_contig52665:1370..14851691679601.3448348-CDS-H-elongata_contig52665:1370..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 1371..1485 +
1622930860.3972774-CDS-H-elongata_contig52665:2403..25231622930860.3972774-CDS-H-elongata_contig52665:2403..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 2404..2523 +
1691679601.3555737-CDS-H-elongata_contig52665:2403..25231691679601.3555737-CDS-H-elongata_contig52665:2403..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 2404..2523 +
1622930860.4154105-CDS-H-elongata_contig52665:2823..29521622930860.4154105-CDS-H-elongata_contig52665:2823..2952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 2824..2952 +
1691679601.3667839-CDS-H-elongata_contig52665:2823..29521691679601.3667839-CDS-H-elongata_contig52665:2823..2952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 2824..2952 +
1622930860.431923-CDS-H-elongata_contig52665:3529..36161622930860.431923-CDS-H-elongata_contig52665:3529..3616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 3530..3616 +
1691679601.386473-CDS-H-elongata_contig52665:3529..36161691679601.386473-CDS-H-elongata_contig52665:3529..3616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52665 3530..3616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52665.12579.1

>prot_H-elongata_contig52665.12579.1 ID=prot_H-elongata_contig52665.12579.1|Name=mRNA_H-elongata_contig52665.12579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
VRLFSLAIAASITSSIISRTRSGLLKFPSRTPAAVVDPYTPGKHSWVAAR
SRWDPHHCSICSGVIAWVSDSGVRCQICGSHAHTECSKRAHKEGFACKAL
CRSDMEVAHKRFFDPQGKSGQGWGDEVCGAGPIDEEGKKPSPPVVMKHQW
MRGSIDDSRRCLGCGGSCAGSGVSRQRGFFCAWCKEQV
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mRNA from alignment at H-elongata_contig52665:808..3616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52665.12579.1 ID=mRNA_H-elongata_contig52665.12579.1|Name=mRNA_H-elongata_contig52665.12579.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2809bp|location=Sequence derived from alignment at H-elongata_contig52665:808..3616+ (Himanthalia elongata Himel1 dioecious)
GTCCGGCTCTTTTCTTTGGCAATCGCTGCCTCCATCACATCATCGATCAT
CTCCAGGACCAGATCAGGGCTGCTGAAGTTTCCCTCCAGGACCCCGGCGG
CCGTCGTCGATCCGTGAGTAGGATTCCGGGCCTGCCTACAGTACCGTGCG
GGGCACAGAGAGTATGTCCATCCCTCATTGAATCCATAGCGAGTACGGTA
ATCTCCCGTTCGTCGGCGAAAGAGCTATCAATAGCGTTCATTCGCATCAG
CTTGCCGTGAGGGGGAACGGGGTTGTGGATAGGATGCAGCTGCTGTCGTA
TTAAAAGCGCCCTCCCTCCCTCCCTTGTTTCATATTAGATACAGTATTAG
CCTCGGGAGTGCGTACCGCTACATCGCCCCGCGGCTATATACGTGAAACC
TCAAGAAAATAAAAAACCTCACGTTGGTCGCGATGCTATACGCTTGTATA
AAGAGCGGTTGCTGCTGCTACCATATCATTAGAGAATCTACCCCCGCTGG
GGACGATCAAGTGAGTTCCAGTCTTGCCCCACTGCTGCTGCTCTCTGACC
TCTCTCGAGGCAGCTACACACCCGGCAAGCACAGCTGGGTGGCGGCGCGC
TCTCGATGGGACCCGCATCACTGCAGCATCTGCAGCGGGGTCATCGCCTG
GGTCTCCGACTCCGGAGTTCGATGCCAGGTAGGCTTTTAGACACTTCTGT
CATATCCTTCGCATATGCTTTCCGTGGCGCACCGTCTGTCATTTTTTTAT
CCACACTTTCACCTCGGAGTTCGACCTACGATACATTTGCTGGAATCGGT
GTAGTTGGTTGGAATTAGGGGGGGGGGGGGTACTTCAATGAAAATCGTGC
GATCTGTGAAGATTTCGCTTGTCAGGCTGTGTTTCCAAAGGATGATATGT
ACCAGCTTTCATTTATCATCCTCGCTTTTGCTACGCCTCACCGGCCATGC
CATGCTATGTCATGCCTTGGGCTAGAGCTATAACTGGACACACCGGGTAA
CCTAATGATGCACATTCTGCGGGCGCGACTATAAACTATACTCTACTCTA
TATACTATACTATAATATACTGTACTATACCTTATTATAATATACTACAC
TCTATGCACTATGCTATACTGTAATCCCAATTACCACAAAGGGATTTGTT
TGATCTCGCGAAGGCATAGTACGCAAAACGGTACCGTACATGTTTGATAC
GCCTAGACTCTAATCTGCTCATGAATACTCCTGGCGGAGCAATCTCATAC
AGTATATGTATGTCGTTGCTATAAGGCTTTTTAACAGTTCGTTGTTCAGT
AGGGACTCGATAAAATGTTATGGGCTTTACTCCTTTCTTCTAGGGAGAGG
CAGGAATCTTCGACCGAGGTCTCTGAGCTCACAGGAATCACTGCTTGAAC
TCCCCCACCCCTATAAACAGCAGTTACATGCCCCAAGAGCCAAGGGAGTG
TTGGGGGTGGCAAAGTTTCCCATATGTCTTAGCTTTTTAGACTCTTGACG
AGGGTATATTTTGTTAAACCGGCCCCGCTGTCCGATCATAGAGAGAGGGC
ATCAAACGAAGGCCTCAATTCAAACCGCCCCGATCTTGCGGCGCAGATCT
GCGGATCTCATGCGCACACGGAGTGCAGCAAAAGAGCGCACAAGGAGGGT
TTCGCGTGCAAGGCGCTCTGCCGCTCGGACATGGAAGTTGCCCACAAACG
ATTTTTCGATCCCCAGGTGCGGGCTTTTGTGTATTTCACTGACTTCTACC
GCGTCCCTCTCGAAATAAGTTTTCCTCGTCAGTTATTGTAATTTCCATAC
CTCAGGCCTGTGTTCGCGTGTTGCGCTGGCGGGGGAAGGGTACTCAACGT
CCCGACGCCTTGCCAACAGTTTGGAAATCCTCCACATTTTCAACTTTGCA
TTGCCCCGGAGGGGGGCGTTCTCATTTGATTATTATAAGGCACGTTTACG
CCATCCACCTCACTATCTCTCTCTTTTCTCTCTCTCTTCGCTTTGCCGTT
ACTCATGCGGCCACAGGGAAAATCTGGGCAAGGGTGGGGCGACGAAGTGT
GTGGTGCGGGTCCCATTGACGAGGAAGGGAAAAAGCCCTCGCCCCCGGTA
GTCATGAAGCACCAGTGGATGCGCGGTAGCATCGACGATTCCCGGGTGAG
GAGATATACCTCTATGATGGAACTCCTTGGACCGGATCCGCGGGAGATTC
CAACCGCCTTCCACTGAAATGATGGGGGGTTTTGCCTCGTCGCTTTGGGT
AGGAATGATCGTTATCTGGAGCGCTGCCGTGGGAGTTGGACGGGGGTTGG
CGTTTTTTTACACGAGGGATTTTGTCTTGGAAACGGTCGACCAGGCGATG
GTATGCAGCAAGCATTTGAGCAAGAGATGGGTGACAGAAAAACAATCGCC
AGTATGGTCACCACCGGCGTTATGCGGGATGTAGGCTTGTGCGTGGTGTA
TACAGGGTACAAGCTTAGAGCCAGCAATCTCTTTATAAGAGTTATTATGG
TTCCTTCGAAAGGCAATTCCAGGGGATTAATTGCAGTCGTACATCGATTC
AACATCGTACCACGTTAGGCGTGTGGCACAAGAATGCGCGATTGGTTTAA
ACGGTAAATATATCTCAGATCAAAATTATCCCCCCCTAACGTTGACCAAC
CTCATGAATCTTATGCCTCCTCGGGCGTTGTGGTGTGGGGCTGCGGCGCA
TGCGCGCGCGCACGATTATCAGCGGTGCTTGGGCTGCGGGGGTTCGTGCG
CGGGGAGCGGAGTGTCAAGACAACGCGGCTTCTTTTGCGCGTGGTGTAAG
GAGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig52665:808..3616+

>mRNA_H-elongata_contig52665.12579.1 ID=mRNA_H-elongata_contig52665.12579.1|Name=mRNA_H-elongata_contig52665.12579.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig52665:808..3616+ (Himanthalia elongata Himel1 dioecious)
GTCCGGCTCTTTTCTTTGGCAATCGCTGCCTCCATCACATCATCGATCAT
CTCCAGGACCAGATCAGGGCTGCTGAAGTTTCCCTCCAGGACCCCGGCGG
CCGTCGTCGATCCGTCCGGCTCTTTTCTTTGGCAATCGCTGCCTCCATCA
CATCATCGATCATCTCCAGGACCAGATCAGGGCTGCTGAAGTTTCCCTCC
AGGACCCCGGCGGCCGTCGTCGATCCCTACACACCCGGCAAGCACAGCTG
GGTGGCGGCGCGCTCTCGATGGGACCCGCATCACTGCAGCATCTGCAGCG
GGGTCATCGCCTGGGTCTCCGACTCCGGAGTTCGATGCCAGCTACACACC
CGGCAAGCACAGCTGGGTGGCGGCGCGCTCTCGATGGGACCCGCATCACT
GCAGCATCTGCAGCGGGGTCATCGCCTGGGTCTCCGACTCCGGAGTTCGA
TGCCAGATCTGCGGATCTCATGCGCACACGGAGTGCAGCAAAAGAGCGCA
CAAGGAGGGTTTCGCGTGCAAGGCGCTCTGCCGCTCGGACATGGAAGTTG
CCCACAAACGATTTTTCGATCCCCAGATCTGCGGATCTCATGCGCACACG
GAGTGCAGCAAAAGAGCGCACAAGGAGGGTTTCGCGTGCAAGGCGCTCTG
CCGCTCGGACATGGAAGTTGCCCACAAACGATTTTTCGATCCCCAGGGAA
AATCTGGGCAAGGGTGGGGCGACGAAGTGTGTGGTGCGGGTCCCATTGAC
GAGGAAGGGAAAAAGCCCTCGCCCCCGGTAGTCATGAAGCACCAGTGGAT
GCGCGGTAGCATCGACGATTCCCGGGGAAAATCTGGGCAAGGGTGGGGCG
ACGAAGTGTGTGGTGCGGGTCCCATTGACGAGGAAGGGAAAAAGCCCTCG
CCCCCGGTAGTCATGAAGCACCAGTGGATGCGCGGTAGCATCGACGATTC
CCGGCGGTGCTTGGGCTGCGGGGGTTCGTGCGCGGGGAGCGGAGTGTCAA
GACAACGCGGCTTCTTTTGCGCGTGGTGTAAGGAGCAGGTACGGTGCTTG
GGCTGCGGGGGTTCGTGCGCGGGGAGCGGAGTGTCAAGACAACGCGGCTT
CTTTTGCGCGTGGTGTAAGGAGCAGGTA
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