mRNA_H-elongata_contig52630.12571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52630.12571.1
Unique NamemRNA_H-elongata_contig52630.12571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52630.12571.1 vs. uniprot
Match: A0A6H5JHN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHN3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.600e-10
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   19 QKWVWADEWHVDFSREVGKQIDPAGWEYAVDF 114
            ++W W D+WHVDFSREVG +ID AGWEYAV+F
Sbjct: 1530 KQWEWRDDWHVDFSREVGTEIDAAGWEYAVEF 1561
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BLAST of mRNA_H-elongata_contig52630.12571.1 vs. uniprot
Match: A0A6H5L0S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.370e-8
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   25 WVWADEWHVDFSREVGKQIDPAGWEYAVD 111
            WVW D+WHVDFS+ VG +ID AGWEY V+
Sbjct: 1280 WVWRDDWHVDFSKAVGTEIDEAGWEYRVE 1308
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BLAST of mRNA_H-elongata_contig52630.12571.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.880e-7
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   25 WVWADEWHVDFSREVGKQIDPAGWEYAVD 111
            W W D+WHVDFS+ VG +ID AGWEY V+
Sbjct: 1894 WAWRDDWHVDFSKAVGTEIDEAGWEYRVE 1922
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52630.12571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHN3_9PHAE3.600e-1071.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0S6_9PHAE5.370e-868.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW3_ECTSI1.880e-765.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52630contigH-elongata_contig52630:2973..3086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue8.8e-08
Seed eggNOG ortholog2880.D7G938
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.6504855-CDS-H-elongata_contig52630:2972..30831622930859.6504855-CDS-H-elongata_contig52630:2972..3083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52630 2973..3083 -
1691679601.0357313-CDS-H-elongata_contig52630:2972..30831691679601.0357313-CDS-H-elongata_contig52630:2972..3083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52630 2973..3083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.6706784-UTR-H-elongata_contig52630:3083..30861622930859.6706784-UTR-H-elongata_contig52630:3083..3086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52630 3084..3086 -
1691679601.054449-UTR-H-elongata_contig52630:3083..30861691679601.054449-UTR-H-elongata_contig52630:3083..3086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52630 3084..3086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52630.12571.1prot_H-elongata_contig52630.12571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52630 2973..3083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52630.12571.1

>prot_H-elongata_contig52630.12571.1 ID=prot_H-elongata_contig52630.12571.1|Name=mRNA_H-elongata_contig52630.12571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MLLFRQKWVWADEWHVDFSREVGKQIDPAGWEYAVDF
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mRNA from alignment at H-elongata_contig52630:2973..3086-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52630.12571.1 ID=mRNA_H-elongata_contig52630.12571.1|Name=mRNA_H-elongata_contig52630.12571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig52630:2973..3086- (Himanthalia elongata Himel1 dioecious)
ACGATGCTTCTCTTCCGGCAGAAGTGGGTGTGGGCCGACGAATGGCACGT
GGACTTCTCTCGAGAGGTGGGCAAGCAGATTGATCCCGCTGGCTGGGAGT
ACGCGGTCGACTTT
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Coding sequence (CDS) from alignment at H-elongata_contig52630:2973..3086-

>mRNA_H-elongata_contig52630.12571.1 ID=mRNA_H-elongata_contig52630.12571.1|Name=mRNA_H-elongata_contig52630.12571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig52630:2973..3086- (Himanthalia elongata Himel1 dioecious)
ATGCTTCTCTTCCGGCAGAAGTGGGTGTGGGCCGACGAATGGCACGTGGA
CTTCTCTCGAGAGGTGGGCAAGCAGATTGATCCCGCTGGCTGGGAGTACG
CGGTCGACTTTATGCTTCTCTTCCGGCAGAAGTGGGTGTGGGCCGACGAA
TGGCACGTGGACTTCTCTCGAGAGGTGGGCAAGCAGATTGATCCCGCTGG
CTGGGAGTACGCGGTCGACTTT
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