mRNA_H-elongata_contig115983.1257.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: D7G1Q4_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Q4_ECTSI) HSP 1 Score: 224 bits (572), Expect = 2.210e-69 Identity = 103/147 (70.07%), Postives = 120/147 (81.63%), Query Frame = 1
Query: 1 IIYAAVITSFIYPVVAHWVWSDTGWASAKLDEEDLLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSEQPDSAAKSMLNTTICPSSATLVTMIVQWLYHSKF 441
+IY +ITS IYPVVAHWVW+ +GWAS+ + DLL+GCG ADFSGSGVVHLTGGLMA +AA PRGGRFD EG+P ++ RQSPALNVLGTL LW GWFFFNASGV SFS QPD AAKSMLNT +CPS+A +VTM++ W+YH F
Sbjct: 106 LIYGVIITSLIYPVVAHWVWARSGWASSFRADGDLLVGCGVADFSGSGVVHLTGGLMALVAAFCVHPRGGRFDAEGKPRRLERQSPALNVLGTLILWAGWFFFNASGVASFSRQPDDAAKSMLNTAVCPSAAVVVTMLIHWMYHRSF 252
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: D7G265_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G265_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.550e-37 Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 IIYAAVITSFIYPVVAHWVWSDTGWASAKL-DEEDLLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSEQPDSAAKSMLNTTICPSSATLVTMIV 417
++++ ++TSFIYP+VAHW WSD GWASA+L D++DLL GCG DF+GSGVVH+TGG+ A + + PR GRF+ +G M +QS L LGT LW GW FNA V SF P AAK M T I +S + +++V
Sbjct: 138 VLHSFLLTSFIYPIVAHWAWSDGGWASARLADDDDLLFGCGVTDFAGSGVVHMTGGMAALMGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVSSFVATPAVAAKVMGVTVIGGASGGITSLLV 277
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: A0A6H5JVJ2_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ2_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.570e-35 Identity = 73/149 (48.99%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 7 YAAVITSFIYPVVAHWVWSDTGWASAKLDEED---LLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSE-QPDSAAKSMLNTTICPSSATLVTMIVQWLYHSKF 441
YA +TSFIYPVV HW W GWAS ++ LL GCGAADF+GSGVVH+ GG+ A +AAI +PR RF G C++ +QSPAL LGTL LW GW+ FNA + S + AA+++++TTI PS+ LV +I + KF
Sbjct: 158 YAIALTSFIYPVVVHWAWHPDGWASPYRTADEGAPLLSGCGAADFAGSGVVHMVGGIAALVAAIAVKPRKSRF-RHGHACRLPQQSPALQTLGTLILWVGWYAFNAGSTITISGGRSVVAARAVVSTTIGPSAGVLVMVIAVKMLEKKF 305
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: A0A6H5J7X8_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X8_9PHAE) HSP 1 Score: 136 bits (342), Expect = 3.090e-35 Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1
Query: 1 IIYAAVITSFIYPVVAHWVWSDTGWASAKL-DEEDLLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSEQPDSAAKSMLNTTICPSSATLVTMI 414
++++ +ITSFIYP+VAHW WSD GWASA+L D++DLL GCGA + +GSGVVH+TGG+ A + PR GRF+ +G M +QS L LGT LW GW FN + SF P AA+ M T I +S + +++
Sbjct: 138 VLHSFLITSFIYPIVAHWAWSDGGWASARLADDDDLLFGCGAIELAGSGVVHMTGGMAALTGIFILGPRAGRFNEDGSSNTMPQQSAVLQTLGTFILWWGWLGFNGGSLPSFVSMPAVAARVMAVTVISGASGGISSLV 276
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: A0A6H5L6H3_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H3_9PHAE) HSP 1 Score: 122 bits (307), Expect = 5.680e-30 Identity = 72/155 (46.45%), Postives = 91/155 (58.71%), Query Frame = 1
Query: 10 AAVITSFIYPVVAHWVWSDTGWASAKLDEED---------------LLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSE-QPDSAAKSMLNTTICPSSATLVTMIVQWL 426
+ +IT IYPVV HWVWS+ GWAS + E+ LLLGCGA DF+G+GVVH+TGG+ A +AA + PR RF G P +M +QSPAL LG L LW GW+ FN V S S + A +M+NTTI S+A V + WL
Sbjct: 150 SVLITFLIYPVVVHWVWSEGGWASPRRCEDTTTAVDYQLCREESRGLLLGCGATDFAGAGVVHMTGGMCALVAAKIVGPRTKRF-RNGIPNRMPQQSPALQTLGVLILWVGWYGFNGGSVGSVSNGRSHLVAAAMVNTTI--SAAASVLSVGLWL 301
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: A0A485L4E9_9STRA (Ammonium transporter n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4E9_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.330e-29 Identity = 62/133 (46.62%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 7 YAAVITSFIYPVVAHWVWSDTGWASAKLDEEDLLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFS-EQPDSAAKSMLNTTICPSSATL 402
YA ++T+FIYPVV HW+WS TG+ASA + LL G GA DF+GSGV+H+TGG+ A + + PR GRF+ G+PC M +QS L +GTL LW GW+ FN + + D AAK +N T+ ++A++
Sbjct: 167 YAVLLTAFIYPVVVHWLWSPTGFASAT-NVTKLLFGVGAVDFAGSGVIHMTGGMAALVGCYILGPRIGRFE-GGKPCDMPKQSVFLQTIGTLLLWFGWYGFNCMSTGTLTGTSADVAAKVAVNLTLAAAAASI 297
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: D8LEG5_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG5_ECTSI) HSP 1 Score: 121 bits (304), Expect = 2.570e-29 Identity = 65/137 (47.45%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 43 VAHWVWSDTGWASAKLDEED---LLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSE-QPDSAAKSMLNTTICPSSATLVTMIVQWLYHSKF 441
V HW W GWAS ++ LL GCGAADF+GSGVVH+ GG+ A +AAI +PR RF GR C++ +QSPAL LGTL LW GW+ FNA + S + AA+++++TTI PS+ LV +I + KF
Sbjct: 119 VVHWAWHPDGWASPYRTADEGAPLLSGCGAADFAGSGVVHMVGGVAALVAAIAVKPRKSRF-RHGRACRLPQQSPALQTLGTLILWVGWYAFNAGSTITISGGRSVVAARAVVSTTIGPSAGVLVMVISVKMLEKKF 254
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: A0A7S2Y3F2_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3F2_9STRA) HSP 1 Score: 120 bits (302), Expect = 3.600e-29 Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 1
Query: 7 YAAVITSFIYPVVAHWVWSDTGWASAKLDEEDLLL-GCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASGVQSFSEQPDSAAKSMLNTTICPSSATLVTMIV 417
YA ITSFI+P+ AHWVWS +G+ S L++ D L+ GCG DF+GS VH GG AF+ +M PR GR+ G C + + S +GTL LW GWF FN Q +E+P +AA++M N+ I +A + T+++
Sbjct: 160 YAFSITSFIFPLAAHWVWSSSGFLSPFLEDTDKLVSGCGVIDFAGSLTVHCLGGTAAFVTCVMVGPRIGRY-VNGEVCNLPQNSWEFQTVGTLLLWVGWFGFNGVSAQHLTEEPLAAARAMCNSAIAAGTACITTVVL 296
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: A0A4S8K016_MUSBA (Ammonium transporter n=4 Tax=Musaceae TaxID=4637 RepID=A0A4S8K016_MUSBA) HSP 1 Score: 119 bits (298), Expect = 6.350e-29 Identity = 62/146 (42.47%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 1 IIYAAVITSFIYPVVAHWVWSDTGWASAKLDEEDLLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFNASG----VQSFSEQPDSA-----AKSMLNTTICPSSATLVTM 411
++Y++++T F+YPVVAHWVWS GW S LL G GA DF+GSGVVHL GG+ A++ PR GRFD G+P M + L VLGT LW GWF FN + + + PD ++ + T + S+A LVT+
Sbjct: 127 LVYSSLLTGFVYPVVAHWVWSSEGWLSPSAGGVGLLFGSGAIDFAGSGVVHLVGGIAGLWGAVIEGPRVGRFDAFGKPVPMRGHNATLVVLGTFLLWFGWFGFNPGSYARILVPYPDAPDQGNWTGVGRTAVTTALAGSTAGLVTL 272
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Match: E1Z3A4_CHLVA (Ammonium transporter n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3A4_CHLVA) HSP 1 Score: 119 bits (299), Expect = 7.550e-29 Identity = 57/110 (51.82%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 1 IIYAAVITSFIYPVVAHWVWSDTGWASAKLDEE------DLLLGCGAADFSGSGVVHLTGGLMAFIAAIMTRPRGGRFDTEGRPCKMVRQSPALNVLGTLALWTGWFFFN 312
I+Y+ +I F+YPVV HWVWS +GWASA E+ LL GCGA DF+GSG VH+ GG+ AF A + PR GRFD G+P + + AL VLGT LW GW+ FN
Sbjct: 140 ILYSVLIIGFVYPVVTHWVWSPSGWASAFRSEQADGTFRSLLFGCGAYDFAGSGAVHMVGGVAAFAGAALLGPRMGRFDANGKPVPIPGHNVALAVLGTFILWFGWYGFN 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115983.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115983.1257.1 >prot_H-elongata_contig115983.1257.1 ID=prot_H-elongata_contig115983.1257.1|Name=mRNA_H-elongata_contig115983.1257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp IIYAAVITSFIYPVVAHWVWSDTGWASAKLDEEDLLLGCGAADFSGSGVVback to top mRNA from alignment at H-elongata_contig115983:152..1943- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115983.1257.1 ID=mRNA_H-elongata_contig115983.1257.1|Name=mRNA_H-elongata_contig115983.1257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-elongata_contig115983:152..1943- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115983:152..1943- >mRNA_H-elongata_contig115983.1257.1 ID=mRNA_H-elongata_contig115983.1257.1|Name=mRNA_H-elongata_contig115983.1257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig115983:152..1943- (Himanthalia elongata Himel1 dioecious)back to top |