mRNA_H-elongata_contig52621.12569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52621.12569.1
Unique NamemRNA_H-elongata_contig52621.12569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig52621.12569.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.230e-29
Identity = 85/201 (42.29%), Postives = 110/201 (54.73%), Query Frame = 1 
Query:    4 LSKVDVEVDGELLKNLKDLGLALAHDVALNLHNGQPVSLHLECDAHDTSVIHLKARCLLSLVPGLAS---ASSASLALPPPASVAKRSSWSPSATGGRG-LALVELLRKVCLEWKQGEATLDGPLALQGSLAAASVLTGASLKLEWNPPPSNQEETITFKVHTGDGS------------YGPLEVVTDPKEPVFVLKDRMI 558
            L +V+VEVD +L+  L+   L LAHDVA+  H GQ V LHLECD H TS+ HLKA CLL LVP L      SS   AL P      R + +  A+G +  LALV L++ V LE  +   TLD   +   SL A  +  GA L L+W  PP+  +  + F V  G+ +            +GPLEV+ D KEPV  LK RM+
Sbjct: 1210 LVRVEVEVDDDLVDTLRSHSLPLAHDVAVATHEGQRVLLHLECDVHATSIPHLKAFCLLGLVPALKENTIPSSQIQALLPXXXXXXRGTAAAPASGAKEELALVGLVKTVRLENTKSGNTLDES-STGASLFATRISEGAQLMLQWGAPPATGKALVKFYVRVGNSTATARDPTRSGSTFGPLEVIADLKEPVSALKARMV 1409
[Close]
BLAST of mRNA_H-elongata_contig52621.12569.1 vs. uniprot
Match: A0A6H5JBH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.890e-25
Identity = 72/169 (42.60%), Postives = 96/169 (56.80%), Query Frame = 1 
Query:    4 LSKVDVEVDGELLKNLKDLGLALAHDVALNLHNGQPVSLHLECDAHDTSVIHLKARCLLSLVPGLAS----ASSASLALPPPASVAKRSSWSPSATGGRGLALVELLRKVCLEWKQGEATLDGPLALQGSLAAASVLTGASLKLEWNPPPSNQEETITFKVHTGDGSYG 498
            L +V+VEVD +L++ L+  GL LAHDVA+  H GQ V L+LECD H TSV HLKA CLL LVP L      +S     LPP    A+ ++ +P++     LALV L++ V LE  +    LD   +   SL AA V  GA L L+W  PP+  +  + F V  G+   G
Sbjct:  279 LVRVEVEVDDDLVETLRSHGLPLAHDVAVATHEGQRVLLNLECDVHATSVPHLKALCLLGLVPALKENAVPSSQIQALLPPXXXXARGTATAPASGAKEELALVGLVKTVRLEDTKSGNALDES-STGASLFAARVTDGAQLMLQWGAPPATGKALVKFYVRVGESFCG 446
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52621.12569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSX8_ECTSI2.230e-2942.29Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
A0A6H5JBH2_9PHAE1.890e-2542.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52621contigH-elongata_contig52621:118..1530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue9.5e-26
Seed eggNOG ortholog2880.D7FSX8
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size559
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52621.12569.1prot_H-elongata_contig52621.12569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52621 118..1530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.5327342-CDS-H-elongata_contig52621:117..1941622930859.5327342-CDS-H-elongata_contig52621:117..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52621 118..194 -
1691679600.9779856-CDS-H-elongata_contig52621:117..1941691679600.9779856-CDS-H-elongata_contig52621:117..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52621 118..194 -
1622930859.548374-CDS-H-elongata_contig52621:452..8451622930859.548374-CDS-H-elongata_contig52621:452..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52621 453..845 -
1691679600.990166-CDS-H-elongata_contig52621:452..8451691679600.990166-CDS-H-elongata_contig52621:452..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52621 453..845 -
1622930859.562683-CDS-H-elongata_contig52621:1442..15301622930859.562683-CDS-H-elongata_contig52621:1442..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52621 1443..1530 -
1691679601.0032403-CDS-H-elongata_contig52621:1442..15301691679601.0032403-CDS-H-elongata_contig52621:1442..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52621 1443..1530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52621.12569.1

>prot_H-elongata_contig52621.12569.1 ID=prot_H-elongata_contig52621.12569.1|Name=mRNA_H-elongata_contig52621.12569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MLSKVDVEVDGELLKNLKDLGLALAHDVALNLHNGQPVSLHLECDAHDTS
VIHLKARCLLSLVPGLASASSASLALPPPASVAKRSSWSPSATGGRGLAL
VELLRKVCLEWKQGEATLDGPLALQGSLAAASVLTGASLKLEWNPPPSNQ
EETITFKVHTGDGSYGPLEVVTDPKEPVFVLKDRMI
back to top

mRNA from alignment at H-elongata_contig52621:118..1530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52621.12569.1 ID=mRNA_H-elongata_contig52621.12569.1|Name=mRNA_H-elongata_contig52621.12569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-elongata_contig52621:118..1530- (Himanthalia elongata Himel1 dioecious)
ATGCTATCGAAAGTCGATGTGGAAGTGGACGGCGAGCTGCTGAAAAACCT
TAAGGACTTGGGGCTGGCCTTGGCGCATGACGTCGCACGTGAGTTTTATA
GTTTTGGTGCAGAAACTGTGTCTCTCGAAAAGTGATCGTTGGTTCTTGTT
TGAAACAGGTACAGTGCTTGTACACGCAGTTTGTACAAGTATTTATTTTC
ATCCCCAGTAGTATGCTGTACTACTGTGCTGCACGAGACTGTCGTATATT
TTATCGTAACCTAATACCTCGTAGCATCCTCTGTTGTTCTAGAGAAGTCC
CATCGTGAGCTCGTACGAGAATGTGTACCCTAAATTAGCCTTAAATGGTA
CGGTAGCATTGTCGGGGTACGGTACAGTAGGTTATATCGGGTTCATGTCG
CGCGCGGGGCGGCGTATATTTCCCGTCACCCGCAGGAAAAACGCCTCAAT
TTATGAACGATTTCCCCTTCTCCCCCTTGGATTCATATGGTACCATCTAC
TCTTATTTTTGTTAACATTAACACCACATGCGTAGACTAATGGCCACGAA
ACCCCACCCCACCCTACCCCACTCCTTTGATACTTTAAGGCCACTCTTGA
GACTTTGAAGTTACCATATGCTGTAGTGTGGTGTAATTTTTTTTCCCGTC
CCCTATTTCTCTCCCCCGCCGCCATCTATATGCAGTCAATCTACACAACG
GCCAGCCAGTAAGCCTCCACCTCGAGTGCGACGCCCACGACACCTCTGTC
ATACACTTGAAGGCCCGCTGCCTCCTCAGCCTCGTCCCGGGCCTAGCCTC
TGCCTCGTCAGCCTCCCTAGCCCTTCCGCCTCCGGCGTCCGTCGCCAAAC
GATCCTCTTGGTCCCCTTCAGCGACTGGTGGTCGGGGGCTCGCCCTCGTT
GAGCTCCTACGAAAGGTGTGCCTGGAGTGGAAGCAGGGAGAGGCGACGCT
CGATGGACCCCTGGCGCTACAGGGTAGCCTCGCAGCCGCTAGTGTGTTAA
CGGGGGCTTCACTCAAGCTTGAGTGGAACCCGCCTCCGTCGAATCAAGAG
GAGACAATCACATTCAAGGTCCATACAGGTAAGAACTCCGCCCGCCCCAC
CCCCCCCACCCTCTCACCCCTTACCTTTTTTTTGTGCACCGTTGGGCGTT
TGATTTAACCGTTGGCTCTTTATATTGGACGTTGGATCTTTTCAATTTCT
GGATCGTTTAGATCTTTGAATACACCACTCAAAATATAGACTAATACAAA
AATATAAACCAATCAAAGAAGGTTTATCAAGATGGACCAATGGAAATAGA
CCGATCAACTTAACCCCACCCCCCCTTTCACCCAAGGCGACGGATCCTAC
GGACCTCTGGAAGTGGTGACGGACCCGAAGGAGCCTGTGTTTGTACTGAA
GGACCGCATGATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52621:118..1530-

>mRNA_H-elongata_contig52621.12569.1 ID=mRNA_H-elongata_contig52621.12569.1|Name=mRNA_H-elongata_contig52621.12569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig52621:118..1530- (Himanthalia elongata Himel1 dioecious)
ATGCTATCGAAAGTCGATGTGGAAGTGGACGGCGAGCTGCTGAAAAACCT
TAAGGACTTGGGGCTGGCCTTGGCGCATGACGTCGCACATGCTATCGAAA
GTCGATGTGGAAGTGGACGGCGAGCTGCTGAAAAACCTTAAGGACTTGGG
GCTGGCCTTGGCGCATGACGTCGCACTCAATCTACACAACGGCCAGCCAG
TAAGCCTCCACCTCGAGTGCGACGCCCACGACACCTCTGTCATACACTTG
AAGGCCCGCTGCCTCCTCAGCCTCGTCCCGGGCCTAGCCTCTGCCTCGTC
AGCCTCCCTAGCCCTTCCGCCTCCGGCGTCCGTCGCCAAACGATCCTCTT
GGTCCCCTTCAGCGACTGGTGGTCGGGGGCTCGCCCTCGTTGAGCTCCTA
CGAAAGGTGTGCCTGGAGTGGAAGCAGGGAGAGGCGACGCTCGATGGACC
CCTGGCGCTACAGGGTAGCCTCGCAGCCGCTAGTGTGTTAACGGGGGCTT
CACTCAAGCTTGAGTGGAACCCGCCTCCGTCGAATCAAGAGGAGACAATC
ACATTCAAGGTCCATACAGTCAATCTACACAACGGCCAGCCAGTAAGCCT
CCACCTCGAGTGCGACGCCCACGACACCTCTGTCATACACTTGAAGGCCC
GCTGCCTCCTCAGCCTCGTCCCGGGCCTAGCCTCTGCCTCGTCAGCCTCC
CTAGCCCTTCCGCCTCCGGCGTCCGTCGCCAAACGATCCTCTTGGTCCCC
TTCAGCGACTGGTGGTCGGGGGCTCGCCCTCGTTGAGCTCCTACGAAAGG
TGTGCCTGGAGTGGAAGCAGGGAGAGGCGACGCTCGATGGACCCCTGGCG
CTACAGGGTAGCCTCGCAGCCGCTAGTGTGTTAACGGGGGCTTCACTCAA
GCTTGAGTGGAACCCGCCTCCGTCGAATCAAGAGGAGACAATCACATTCA
AGGTCCATACAGGCGACGGATCCTACGGACCTCTGGAAGTGGTGACGGAC
CCGAAGGAGCCTGTGTTTGTACTGAAGGACCGCATGATCGCGACGGATCC
TACGGACCTCTGGAAGTGGTGACGGACCCGAAGGAGCCTGTGTTTGTACT
GAAGGACCGCATGATC
back to top