prot_H-elongata_contig52604.12566.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52604.12566.1
Unique Nameprot_H-elongata_contig52604.12566.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length649
Homology
BLAST of mRNA_H-elongata_contig52604.12566.1 vs. uniprot
Match: A0A6H5KT64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT64_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.700e-35
Identity = 203/574 (35.37%), Postives = 240/574 (41.81%), Query Frame = 0
Query:    1 MQDLKDAALADAGADSGAGGL-DGLMDPRDVAGLPDFFKAGDGDSLTEGALSGGGGVGGGMGRGDPSVFDPLASFDLGSGNQE-----DDGAALFASLGLETAGQQXXXXXXXXXXXXXXXXXXXXXXQQRDRGAFGGTDQSDWDRMQKQFEDMHKSFLQDYRQIEEDGDDGTLDSAADEGKQTAFATMRQLSLDDIE-----------------------------------------STPDEEADTAETPAGRAGGPPGSPL-TGPSVLPPGAKTLAELEAEFAAAAMITVSPAVV---RSPPLAAAARTETSPPGLARPDGVGGSGPSGGLERQSAVGDKRVMRATADGGVMTGRGEGEGNSRREEMAAS---------SKGMVWRQTQHQQPEKQQQPVGAQVQSGSGDLASPQGNLHGASLAGVPSPVGQHHE-------GGVVSSFRSGRGIGPVGRPTPSSHMGHVMVQSRPPXXXXXXXXXXXHP------GFPPFQPPGMPPFHTLPPHVQAHLIQQRPMAHARTT----GAPPRQPLHSPSPPPQSPHPPRFTSGGGAPRLPPL 497
            MQDL     ADAGADS AGGL D   D  +  GLPDFF+ G          +GG    G       ++FDPLA FDLG          D G +L ASLGL  AG  XXXXXXXXXX                  + GG DQS+W  MQKQFEDM+KSFLQDYR IEED    TLD+A D+G+Q AFATMRQLSLDD+E                                         +TP     TA  PA      P SP+ TG S+LPPGAKTL ELEAEFA   +IT++PA     RS  +A+ A  E         +G G S  + G    SAVG     R  +   V++ RG  E +S REE  A          + G  W Q   Q P +                                       +                    G  G P P S     +V  + P           H       GFPP   PGM  FH LPPHVQAHL+QQ+ MAHA       G  P  PL   + PP       F + G     PP+
Sbjct:    1 MQDL-----ADAGADSAAGGLFDSAGDITNTDGLPDFFQTGXXXXXXXXXNTGGLDSPG-------NLFDPLADFDLGGXXXXXXXXXDAGNSLLASLGLPAAGXXXXXXXXXXXXA----------------ASVGGADQSEWALMQKQFEDMNKSFLQDYRHIEEDDQPETLDTANDDGEQAAFATMRQLSLDDVEPGFPSEAAAVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPLXXXXTAPAPAAT----PASPMRTGMSMLPPGAKTLEELEAEFA---VITITPAASSPSRSERMASCASLE---------NGGGSSSNANG----SAVGVPAAARVGSPLAVVS-RGANESHSVREETGAEVGQQGGGGVAPGAAWPQQMQQHPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLTXXXXXXXXXXXXXXXXXPGGPGMPPPFS----PLVGPQQPFPPHMLPPPHQHXXXXGMGGFPPRPVPGMXXFHALPPHVQAHLLQQQAMAHAHAQQHGGGRGPAPPLRPAAAPP-------FAAAGPVSGFPPM 514          
BLAST of mRNA_H-elongata_contig52604.12566.1 vs. uniprot
Match: D8LNC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.490e-30
Identity = 139/300 (46.33%), Postives = 156/300 (52.00%), Query Frame = 0
Query:    1 MQDLKDAALADAGADSGAGGL-DGLMDPRDVAGLPDFFKAGDGDSLTEGALSGGGGVGGGMGRGDPS-VFDPLASFDLGS------GNQEDDGAALFASLGLETAGQQXXXXXXXXXXXXXXXXXXXXXXQQRDRGAFGGTDQSDWDRMQKQFEDMHKSFLQDYRQIEEDGDDGTLDSAADEGKQTAFATMRQLSLDDIESTPDEEADTAETPAGRAGGP-------------------------------------PGSPL-TGPSVLPPGAKTLAELEAEFAAAAMITVSPAVVRSPP 254
            MQDL     ADAGADS AGGL D   D  +  GLPDFF+ G           GG           PS +FDPLA FDLG       GN  D G AL ASLGL  AG  XXXXXXXXXXXXX               + GG DQS+W  MQKQFEDM+KSFLQDY  IEED    TLD+A D+G+Q AFATMRQLSLDD+E     E  +    AG    P                                     P SP+ TG S+LPPGAKTL ELEAEFA   +I+++PA   SPP
Sbjct:   60 MQDL-----ADAGADSAAGGLFDSAGDITNTDGLPDFFQTGGXXXXXXXXNRGG--------LDSPSNLFDPLADFDLGGKGGPGQGNG-DAGNALLASLGLPAAGXXXXXXXXXXXXXXX---------------SVGGADQSEWALMQKQFEDMNKSFLQDYHHIEEDDQPETLDTANDDGEQAAFATMRQLSLDDVEPGFPSEVASLSAAAGSPNTPRQQEEVQQPVXXXXXXXXXXXXXXXXXXXXXXXXXXTPASPMRTGMSMLPPGAKTLEELEAEFA---VISITPAA-SSPP 326          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52604.12566.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT64_9PHAE2.700e-3535.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNC6_ECTSI1.490e-3046.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..123
NoneNo IPR availablePANTHERPTHR21704:SF19coord: 330..613
IPR033031SCC2/Nipped-B familyPANTHERPTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDcoord: 330..613

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52604contigH-elongata_contig52604:786..3927 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52604.12566.1mRNA_H-elongata_contig52604.12566.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52604 777..3927 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52604.12566.1 ID=prot_H-elongata_contig52604.12566.1|Name=mRNA_H-elongata_contig52604.12566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=649bp
MQDLKDAALADAGADSGAGGLDGLMDPRDVAGLPDFFKAGDGDSLTEGAL
SGGGGVGGGMGRGDPSVFDPLASFDLGSGNQEDDGAALFASLGLETAGQQ
RRRQQQQLQQQQQQREEENHQRQQRDRGAFGGTDQSDWDRMQKQFEDMHK
SFLQDYRQIEEDGDDGTLDSAADEGKQTAFATMRQLSLDDIESTPDEEAD
TAETPAGRAGGPPGSPLTGPSVLPPGAKTLAELEAEFAAAAMITVSPAVV
RSPPLAAAARTETSPPGLARPDGVGGSGPSGGLERQSAVGDKRVMRATAD
GGVMTGRGEGEGNSRREEMAASSKGMVWRQTQHQQPEKQQQPVGAQVQSG
SGDLASPQGNLHGASLAGVPSPVGQHHEGGVVSSFRSGRGIGPVGRPTPS
SHMGHVMVQSRPPPSPHQQQQQQHHPGFPPFQPPGMPPFHTLPPHVQAHL
IQQRPMAHARTTGAPPRQPLHSPSPPPQSPHPPRFTSGGGAPRLPPLQQH
QQHPQRTHSGNQISRGGVGPGLPMMISGQQAFPQRDGGGRAPPGLGMPTP
PPSLQTPTPSHPRPPTPRFARPPMPPPSPILIPQQHHHHHHQQMHQQHQM
HQQHQMHQHHQMQGGVSRSDARAPLPPLEMFPRGELMTAYDTRREKER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033031SCC2/Nipped-B