mRNA_H-elongata_contig52545.12562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52545.12562.1
Unique NamemRNA_H-elongata_contig52545.12562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: D7G6V6_ECTSI (Cysteine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.260e-30
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ 212
            LFVGCS+AMNCVGAV AARR G G +IVTVLCDSG+RGISRFWNR+F+EAR LKWP P   TL NLDF++
Sbjct:  349 LFVGCSAAMNCVGAVAAARRAGTGKRIVTVLCDSGSRGISRFWNREFIEARGLKWPLPNDETLENLDFIE 418          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A7S2UYT2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYT2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.500e-21
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
            LFVG SSA+NCVGAVLAA+ LGPGH IVT+LCDSG R  SR W++KF++   L+WP P    + +LDF+
Sbjct:   51 LFVGSSSAINCVGAVLAAKHLGPGHTIVTILCDSGQRHRSRLWSQKFIKDFGLQWPEPA--QVASLDFL 117          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A6V1K2C6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K2C6_HETAK)

HSP 1 Score: 93.6 bits (231), Expect = 8.450e-21
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
            LFVG SSA+NCVGAVLAA+ LGPGH +VTVLCDSG R + RFW+R  +  R L+WP  +   LH++DF+
Sbjct:  347 LFVGASSALNCVGAVLAAQSLGPGHTVVTVLCDSGQRHLGRFWDRATLARRGLRWPGEK--DLHSIDFL 413          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A835Z4W8_9STRA (Putative cysteine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-19
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
            L +G SSAMN  GAV AAR+LG GH IVTVLCD G R  SRFWNR FVE R L+WP P+   L +LDFV
Sbjct:  317 LLLGSSSAMNAAGAVKAARQLGSGHTIVTVLCDHGARYASRFWNRAFVEGRGLQWPEPD--QLLSLDFV 383          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A4D9DD93_9STRA (PALP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD93_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.870e-17
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ-NGR 221
            +FVG S+AMN VG V AAR LGPGH +VTVLCDSG R ++RFWNR+ VE   L WP        NL+F+Q NG+
Sbjct:  339 MFVGSSTAMNLVGCVRAARVLGPGHTVVTVLCDSGQRHLTRFWNRRVVEGAGLIWPET---PPVNLNFLQRNGQ 409          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A5B8MMS2_9CHLO (Cysteine synthase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MMS2_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.530e-16
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
            LFVG SSAMNCVGA+  AR+LGPGH IVTVLCD G R +S+F NR ++E   L   SP+G    +LDFV
Sbjct:  324 LFVGSSSAMNCVGALKVARKLGPGHTIVTVLCDGGQRHLSKFHNRAYLEKMNL---SPKG--CESLDFV 387          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A1Y1Y8I3_9FUNG (OAS-TL 2 protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y8I3_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 5.780e-16
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ 212
            LF+G SSA+NCV AV  AR+LGPGH IVT+LCDSG R +++FWN +++    L   +P+     NL F+Q
Sbjct:  335 LFIGSSSAINCVAAVRMARQLGPGHTIVTILCDSGQRHLTKFWNDEYIANANLSTEAPD-----NLSFIQ 399          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A6G0WXC4_9STRA (PALP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXC4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.440e-15
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVE 149
            +FVGCSSAMNCV AV AAR+LGPGH IVT+LCDSG R +++FWN   +E
Sbjct:  317 IFVGCSSAMNCVAAVRAARKLGPGHTIVTILCDSGQRHLTKFWNDAHLE 365          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A015LFH0_RHIIW (Putative cysteine synthase n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015LFH0_RHIIW)

HSP 1 Score: 77.4 bits (189), Expect = 3.170e-15
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ 212
            LF+G SSA+NCVG V  AR+LGPGH+IVT+LCDSG R +++FWN ++++   +     EG     L+F++
Sbjct:  246 LFIGSSSAINCVGCVRVARKLGPGHRIVTILCDSGQRHLTKFWNDEYLKQNNIYPKEEEG-----LNFIK 310          
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A1Z5KKY4_FISSO (Cysteine synthase A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKY4_FISSO)

HSP 1 Score: 77.8 bits (190), Expect = 4.450e-15
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 3
Query:    3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTL 191
            L+VG SSAMN VGA+  A +L PG ++VTV+CDSG+R ++RFWNR F+  R L+WP  + + L
Sbjct:  384 LWVGSSSAMNVVGAIETAWKLSPGSRVVTVICDSGSRHLTRFWNRDFILERGLRWPRDQEKEL 446          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6V6_ECTSI3.260e-3075.71Cysteine synthase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S2UYT2_9STRA1.500e-2160.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1K2C6_HETAK8.450e-2160.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z4W8_9STRA1.200e-1965.22Putative cysteine synthase n=1 Tax=Tribonema minus... [more]
A0A4D9DD93_9STRA1.870e-1758.11PALP domain-containing protein n=2 Tax=Monodopsida... [more]
A0A5B8MMS2_9CHLO1.530e-1660.87Cysteine synthase n=2 Tax=Chloropicon primus TaxID... [more]
A0A1Y1Y8I3_9FUNG5.780e-1651.43OAS-TL 2 protein n=1 Tax=Basidiobolus meristosporu... [more]
A0A6G0WXC4_9STRA1.440e-1569.39PALP domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A015LFH0_RHIIW3.170e-1548.57Putative cysteine synthase n=1 Tax=Rhizophagus irr... [more]
A0A1Z5KKY4_FISSO4.450e-1553.97Cysteine synthase A n=2 Tax=Fistulifera solaris Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52545contigH-elongata_contig52545:2090..2502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue4.3e-21
Seed eggNOG ortholog2880.D7G6V6
Preferred namecys12
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006082,GO:0006520,GO:0006534,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019867,GO:0030170,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.cysteine synthase activity
EggNOG OGsCOG0031@1,KOG1481@2759
EC2.5.1.47
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s16_g6345_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52545.12562.1prot_H-elongata_contig52545.12562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52545 2116..2502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.7246492-UTR-H-elongata_contig52545:2089..21151622930858.7246492-UTR-H-elongata_contig52545:2089..2115Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52545 2090..2115 +
1691679600.6226294-UTR-H-elongata_contig52545:2089..21151691679600.6226294-UTR-H-elongata_contig52545:2089..2115Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52545 2090..2115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.736459-CDS-H-elongata_contig52545:2115..22131622930858.736459-CDS-H-elongata_contig52545:2115..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52545 2116..2213 +
1691679600.6433659-CDS-H-elongata_contig52545:2115..22131691679600.6433659-CDS-H-elongata_contig52545:2115..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52545 2116..2213 +
1622930858.7573795-CDS-H-elongata_contig52545:2402..25021622930858.7573795-CDS-H-elongata_contig52545:2402..2502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52545 2403..2502 +
1691679600.6541069-CDS-H-elongata_contig52545:2402..25021691679600.6541069-CDS-H-elongata_contig52545:2402..2502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52545 2403..2502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52545.12562.1

>prot_H-elongata_contig52545.12562.1 ID=prot_H-elongata_contig52545.12562.1|Name=mRNA_H-elongata_contig52545.12562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSP
EGRTLHNLDFVQNGR*
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mRNA from alignment at H-elongata_contig52545:2090..2502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52545.12562.1 ID=mRNA_H-elongata_contig52545.12562.1|Name=mRNA_H-elongata_contig52545.12562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=413bp|location=Sequence derived from alignment at H-elongata_contig52545:2090..2502+ (Himanthalia elongata Himel1 dioecious)
GTTTGTTCGTTGGCTGCTCCTCAGCAATGAACTGCGTTGGAGCTGTCTTA GCGGCCAGGCGGCTTGGACCAGGGCACCAAATCGTCACCGTGCTGTGCGA CAGTGGAAATAGGGGCATTTCTAGGTAAGTTAATGCATCCTCCCTTGCCA CACTTGTACTACAGCGTGCTACATTTACGACGTCTATCTAAAAAAAGAAT GTCGCTCGAGCGTCAAATATTTAGGAAAGGTATAATGGTTCTTACCGTTA CATGAGGCTGTCGCCGTTCCACCGATGCTCTCCTTTTTTTCCGCCAACGA TGCTCATAAACAGGTTTTGGAACAGGAAGTTTGTCGAGGCGCGACGCCTC AAATGGCCATCTCCGGAAGGCCGAACGCTACACAATTTGGATTTTGTACA GAATGGGCGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig52545:2090..2502+

>mRNA_H-elongata_contig52545.12562.1 ID=mRNA_H-elongata_contig52545.12562.1|Name=mRNA_H-elongata_contig52545.12562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig52545:2090..2502+ (Himanthalia elongata Himel1 dioecious)
ATGAACTGCGTTGGAGCTGTCTTAGCGGCCAGGCGGCTTGGACCAGGGCA
CCAAATCGTCACCGTGCTGTGCGACAGTGGAAATAGGGGCATTTCTAGAT
GAACTGCGTTGGAGCTGTCTTAGCGGCCAGGCGGCTTGGACCAGGGCACC
AAATCGTCACCGTGCTGTGCGACAGTGGAAATAGGGGCATTTCTAGGTTT
TGGAACAGGAAGTTTGTCGAGGCGCGACGCCTCAAATGGCCATCTCCGGA
AGGCCGAACGCTACACAATTTGGATTTTGTACAGAATGGGCGCTGAGTTT
TGGAACAGGAAGTTTGTCGAGGCGCGACGCCTCAAATGGCCATCTCCGGA
AGGCCGAACGCTACACAATTTGGATTTTGTACAGAATGGGCGCTGA
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