mRNA_H-elongata_contig525.12554.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 138 bits (348), Expect = 9.080e-36 Identity = 68/116 (58.62%), Postives = 88/116 (75.86%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
V +TNFY RL+ ATIGP+VVLGALA+ + ++ RN HS ++ A +KHLS+ +F++F++YSSVS+ IFQTFVC+ +D GV YLRADY L C TDTH A YAG+M VYP GIP
Sbjct: 112 VVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIP 227
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 133 bits (335), Expect = 7.340e-33 Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
V++TNFY+RL++ATIGP++VLG L + +A RN H AMR +HLSV +F++F++Y++VSYTIF+TFVCD +D G +YLRADY L C T H A+ YAG+ LVYPVGIP
Sbjct: 768 VYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIP 883
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 133 bits (334), Expect = 9.980e-33 Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
V++TNFY+RL++ATIGP++VLG L + +A RN H AMR +HLSV +F++F++Y++VSYTIF+TFVCD +D G +YLRADY L C T H A+ YAG+ LVYPVGIP
Sbjct: 749 VYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIP 864
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 131 bits (330), Expect = 3.270e-32 Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
+ + NFY RL T+GP+VV G LA + ++ RN HS M+ A +KHLS+ +F+ F++YSSVS+ IFQTFVC+ +D GV YLRADY L C T H A M YAG+M LVYPVGIP
Sbjct: 788 IVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIP 903
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.880e-31 Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
V ETNFY RL +T+ P+ +LG LA H +A N HS MR A +KHLS+ +F++F YSSVS+TIFQTF+C+ +D V YLRADY L C T TH YAG+M LVYP+GIP
Sbjct: 70 VVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 185
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.050e-31 Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 193 ETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
ETNFY RL +TI P+ +LG LA H +A N HS MR A +KHLS+ +F++F +YSSVS+TIFQTF+C+ +D V YLRADY L C T TH YAG+M LVYP+GIP
Sbjct: 94 ETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIP 207
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI) HSP 1 Score: 124 bits (312), Expect = 3.320e-31 Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
+ ++NFY ATI P+VV GA A+ + ++ RN HS M+ A +KHLS+ +F++F++YSSV + IFQTFVC+ +D+G+ YLRADY L C T HKA M YAG+M VYPVGIP
Sbjct: 77 IVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIP 192
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 122 bits (307), Expect = 3.980e-29 Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
V T+F++RL++ATIGP+VVL LA+ + RN S A+R NKHLS +F++F +YSSVS+T+FQTFVCD +D GV+YLRADY L C T + AF YA +M VYP+GIP
Sbjct: 760 VVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIP 875
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 119 bits (298), Expect = 6.780e-28 Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 187 VFETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
V +T+FY+RL+L TI P VVLG L G + AM V ++HLSV +F++F++Y++VSYTIF+TFVCD +D G +YLR+DY L C T+TH A+ YAG+M LVYPVGIP
Sbjct: 773 VCDTDFYDRLLLTTICPAVVLGLL-----------GCTYLAMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIP 877
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE) HSP 1 Score: 113 bits (282), Expect = 9.100e-26 Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 193 ETNFYERLVLATIGPIVVLGALAIIHRLAVIRNGHSIRAMRVAN--NKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLECLTDTHKAFMTYAGIMTLVYPVGIP 534
+ +F++RL+L T+GP+V +G L + +R+AV RNG + N +KHLS ++ L F++YSSVS T+FQTF C+ +D G+ YLR DY + C HKAF YAGIM +VYPVGIP
Sbjct: 767 DIDFHDRLLLGTLGPLVAVGFLVMTYRVAVRRNGTAGGQTPADNTRHKHLSALLLLTFLIYSSVSSTVFQTFACETLDDGIEYLRVDYTIHCTDAKHKAFEVYAGIMVVVYPVGIP 882 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig525.12554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig525.12554.1 >prot_H-elongata_contig525.12554.1 ID=prot_H-elongata_contig525.12554.1|Name=mRNA_H-elongata_contig525.12554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MRVANNKHLSVVVFLLFILYSSVSYTIFQTFVCDLMDSGVAYLRADYGLEback to top mRNA from alignment at H-elongata_contig525:13623..14339- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig525.12554.1 ID=mRNA_H-elongata_contig525.12554.1|Name=mRNA_H-elongata_contig525.12554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig525:13623..14339- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig525:13623..14339- >mRNA_H-elongata_contig525.12554.1 ID=mRNA_H-elongata_contig525.12554.1|Name=mRNA_H-elongata_contig525.12554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig525:13623..14339- (Himanthalia elongata Himel1 dioecious)back to top |