mRNA_H-elongata_contig52481.12552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig52481.12552.1
Unique Name	mRNA_H-elongata_contig52481.12552.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.090e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:   16 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A4D9CLB0_9STRA (Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.630e-64
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1

Query:    7 LRSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            L +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   14 LTAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 119

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A6J1VXA0_9SAUR (Histone H4 n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1VXA0_9SAUR)

HSP 1 Score: 199 bits (506), Expect = 3.640e-64
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   10 RSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            RSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 RSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 130

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 198 bits (504), Expect = 3.860e-64
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 1

Query:    1 QSLRSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            Q L +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 QHLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 198 bits (503), Expect = 4.380e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:   16 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 199 bits (505), Expect = 4.400e-64
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   13 SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A396IK64_MEDTR (Histone H4 n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IK64_MEDTR)

HSP 1 Score: 200 bits (508), Expect = 4.960e-64
Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 1

Query:    1 QSLRSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            + L++MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   54 EKLKAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 161

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: W5QFR6_SHEEP (Histone H4 n=4 Tax=Laurasiatheria TaxID=314145 RepID=W5QFR6_SHEEP)

HSP 1 Score: 198 bits (503), Expect = 5.140e-64
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 1

Query:    4 SLRSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            S ++MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 SYKAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 108

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BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A8C3W9Z8_9CETA (Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C3W9Z8_9CETA)

HSP 1 Score: 197 bits (502), Expect = 6.430e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   13 SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104

[Close]

BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Match: A0A091DRM4_FUKDA (Histone H4 n=2 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091DRM4_FUKDA)

HSP 1 Score: 199 bits (505), Expect = 6.710e-64
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1

Query:    4 SLRSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 324
            SL +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   32 SLAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 138

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot

BLAST of mRNA_H-elongata_contig52481.12552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A024G0M5_9STRA	3.090e-64	100.00	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
A0A4D9CLB0_9STRA	3.630e-64	97.17	Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776...	[more]
A0A6J1VXA0_9SAUR	3.640e-64	98.10	Histone H4 n=1 Tax=Notechis scutatus TaxID=8663 Re...	[more]
W5QFN7_SHEEP	3.860e-64	95.37	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q...	[more]
H4_SOLLC	4.380e-64	99.03	Histone H4 n=13 Tax=cellular organisms TaxID=13156...	[more]
A0A3L6V663_9STRA	4.400e-64	99.04	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A396IK64_MEDTR	4.960e-64	94.44	Histone H4 n=1 Tax=Medicago truncatula TaxID=3880 ...	[more]
W5QFR6_SHEEP	5.140e-64	95.33	Histone H4 n=4 Tax=Laurasiatheria TaxID=314145 Rep...	[more]
A0A8C3W9Z8_9CETA	6.430e-64	98.08	Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID...	[more]
A0A091DRM4_FUKDA	6.710e-64	96.26	Histone H4 n=2 Tax=Fukomys damarensis TaxID=885580...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig52481	contig	H-elongata_contig52481:376..702 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.7
Seed ortholog evalue	1.3e-48
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Hectar predicted targeting category	other localisation
Exons	1
Model size	327
Cds size	312
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930857.4268-CDS-H-elongata_contig52481:375..687	1622930857.4268-CDS-H-elongata_contig52481:375..687	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig52481 376..687 -
1691679600.0211587-CDS-H-elongata_contig52481:375..687	1691679600.0211587-CDS-H-elongata_contig52481:375..687	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig52481 376..687 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930857.4501414-UTR-H-elongata_contig52481:687..702	1622930857.4501414-UTR-H-elongata_contig52481:687..702	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig52481 688..702 -
1691679600.0330777-UTR-H-elongata_contig52481:687..702	1691679600.0330777-UTR-H-elongata_contig52481:687..702	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig52481 688..702 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig52481.12552.1	prot_H-elongata_contig52481.12552.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig52481 376..687 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig52481:376..702-
coding sequence from alignment at H-elongata_contig52481:376..702-

protein sequence of mRNA_H-elongata_contig52481.12552.1

>prot_H-elongata_contig52481.12552.1 ID=prot_H-elongata_contig52481.12552.1|Name=mRNA_H-elongata_contig52481.12552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*

mRNA from alignment at H-elongata_contig52481:376..702-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig52481.12552.1 ID=mRNA_H-elongata_contig52481.12552.1|Name=mRNA_H-elongata_contig52481.12552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig52481:376..702- (Himanthalia elongata Himel1 dioecious)
CAGTCACTACGAAGCATGTCTGGTCGGGGAAAAGGCGGTAAAGGTCTGGG
AAAGGGTGGAGCCAAGCGCCACCGCAAGGTGCTACGTGACAATATCCAGG
GTATCACGAAGCCCGCCATCCGCCGTTTGGCTCGCCGCGGGGGTGTAAAG
CGTATTTCTGGACTAATTTACGAGGAGACCCGCGGCGTGCTGAAGGTGTT
CCTCGAAAACGTGATTCGCGACTCGGTCACGTACACCGAGCACGCTCGCA
GAAAGACGGTGACCGCCATGGACGTTGTTTACGCTCTTAAGCGTCAGGGC
CGCACCCTTTACGGTTTTGGTGGCTAA

Coding sequence (CDS) from alignment at H-elongata_contig52481:376..702-

>mRNA_H-elongata_contig52481.12552.1 ID=mRNA_H-elongata_contig52481.12552.1|Name=mRNA_H-elongata_contig52481.12552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig52481:376..702- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGTCGGGGAAAAGGCGGTAAAGGTCTGGGAAAGGGTGGAGCCAA
GCGCCACCGCAAGGTGCTACGTGACAATATCCAGGGTATCACGAAGCCCG
CCATCCGCCGTTTGGCTCGCCGCGGGGGTGTAAAGCGTATTTCTGGACTA
ATTTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTCCTCGAAAACGTGAT
TCGCGACTCGGTCACGTACACCGAGCACGCTCGCAGAAAGACGGTGACCG
CCATGGACGTTGTTTACGCTCTTAAGCGTCAGGGCCGCACCCTTTACGGT
TTTGGTGGCTAAATGTCTGGTCGGGGAAAAGGCGGTAAAGGTCTGGGAAA
GGGTGGAGCCAAGCGCCACCGCAAGGTGCTACGTGACAATATCCAGGGTA
TCACGAAGCCCGCCATCCGCCGTTTGGCTCGCCGCGGGGGTGTAAAGCGT
ATTTCTGGACTAATTTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTCCT
CGAAAACGTGATTCGCGACTCGGTCACGTACACCGAGCACGCTCGCAGAA
AGACGGTGACCGCCATGGACGTTGTTTACGCTCTTAAGCGTCAGGGCCGC
ACCCTTTACGGTTTTGGTGGCTAA