mRNA_H-elongata_contig52424.12549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52424.12549.1
Unique NamemRNA_H-elongata_contig52424.12549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A6H5JCV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.100e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   16 MDLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKV 141
            MDLQ GPTFEDLSIDD+L QL+R+VRYSSSSIALQRLVHVK+
Sbjct:    1 MDLQGGPTFEDLSIDDELTQLQRLVRYSSSSIALQRLVHVKM 42
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.720e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   16 MDLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKV 141
            MDLQ GPTFEDLSIDD+L QL+R+VRYSSSSIALQRLVHVK+
Sbjct:    1 MDLQGGPTFEDLSIDDELTQLQRLVRYSSSSIALQRLVHVKM 42
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A836CBA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-10
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   34 PTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKVKK 147
            PTF+DLSIDD+L+QLERVV+YS+SSIALQRLVHVK  +
Sbjct:    8 PTFDDLSIDDNLSQLERVVKYSTSSIALQRLVHVKAMR 45
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A5D6XWK2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWK2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-8
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   19 DLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKVKKGGHTVQSRARCCQRLV 195
            +L SGPTFEDL+IDD L+ ++RV +Y  S+IALQR++HVK+ +   T       C+RL+
Sbjct:   14 ELPSGPTFEDLAIDDSLSDVDRVSKYVCSNIALQRVMHVKMLQETATAIGFPATCERLI 72
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A067D2P1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2P1_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 5.290e-8
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    7 GRNMDLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKV 141
            G + D   GPTFEDL+IDD L  L+RV+RY  S+IALQR++HV++
Sbjct:    6 GYHDDRDGGPTFEDLAIDDSLTDLDRVIRYVDSNIALQRVIHVRM 50
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: K3X4H1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4H1_GLOUD)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-7
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   19 DLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKVKKGGHTVQSRARCCQRLV 195
            +L++GPTFEDL+IDD L+ ++RV +Y  S+IALQR++HVK+ +           C RL+
Sbjct:   14 ELENGPTFEDLAIDDSLSDVDRVTKYVCSNIALQRVMHVKMLQDTAKSIGFQATCDRLI 72
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A6A5AZE5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AZE5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.490e-7
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   28 SGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKV 141
            SG TFEDL+IDD L  LERVVRY  S+IALQR++HV++
Sbjct:    9 SGATFEDLAIDDTLTDLERVVRYVHSNIALQRVIHVRM 46
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A1V9ZTD7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTD7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.850e-7
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   19 DLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKV 141
            D   GPTFEDL+IDD L  L+RV+RY  S+IALQR++HV++
Sbjct:   11 DHDGGPTFEDLAIDDSLTDLDRVLRYVESNIALQRVIHVRM 51
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A1V9ZQQ8_9STRA (Protein kinase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQQ8_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   31 GPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKVKKGGHTVQSRARCCQRLV 195
            GPTFEDL+IDD L  L+RV+RY  S+IALQR++HV++ +   T     + C  ++
Sbjct:  556 GPTFEDLAIDDSLTDLDRVMRYVCSNIALQRVIHVRMLEETATASGYDKTCDCII 610
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BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Match: A0A3R7Y5U1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y5U1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.420e-7
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   28 SGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKV 141
            SG TFEDL+IDD L  LERVVRY  S+IALQR++HV++
Sbjct:    9 SGATFEDLAIDDTLTDLERVVRYVHSNIALQRVIHVRM 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52424.12549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCV5_9PHAE6.100e-1485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC4_ECTSI7.720e-1485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBA7_9STRA1.510e-1078.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XWK2_9STRA1.510e-849.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067D2P1_SAPPC5.290e-857.78Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
K3X4H1_GLOUD1.340e-745.76Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A5AZE5_9STRA1.490e-768.42Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1V9ZTD7_9STRA1.850e-760.98Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9ZQQ8_9STRA1.870e-747.27Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A3R7Y5U1_9STRA4.420e-768.42Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52424contigH-elongata_contig52424:342..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.2201517-CDS-H-elongata_contig52424:341..5241622930857.2201517-CDS-H-elongata_contig52424:341..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52424 342..524 -
1691679599.9454596-CDS-H-elongata_contig52424:341..5241691679599.9454596-CDS-H-elongata_contig52424:341..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52424 342..524 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.2419238-UTR-H-elongata_contig52424:524..5391622930857.2419238-UTR-H-elongata_contig52424:524..539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52424 525..539 -
1691679599.9595425-UTR-H-elongata_contig52424:524..5391691679599.9595425-UTR-H-elongata_contig52424:524..539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52424 525..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52424.12549.1prot_H-elongata_contig52424.12549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52424 342..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52424.12549.1

>prot_H-elongata_contig52424.12549.1 ID=prot_H-elongata_contig52424.12549.1|Name=mRNA_H-elongata_contig52424.12549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MDLQSGPTFEDLSIDDDLNQLERVVRYSSSSIALQRLVHVKVKKGGHTVQ
SRARCCQRLVL
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mRNA from alignment at H-elongata_contig52424:342..539-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52424.12549.1 ID=mRNA_H-elongata_contig52424.12549.1|Name=mRNA_H-elongata_contig52424.12549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig52424:342..539- (Himanthalia elongata Himel1 dioecious)
GGGTTAGGGAGGAACATGGACTTGCAGAGCGGCCCAACGTTTGAAGACCT
ATCGATCGACGATGATCTCAACCAGCTAGAGAGAGTCGTCCGGTATAGCA
GCAGTTCCATCGCGCTGCAGCGTCTCGTTCACGTTAAGGTGAAGAAGGGG
GGTCATACTGTTCAATCGCGGGCTCGCTGCTGTCAGAGGCTGGTGCTT
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Coding sequence (CDS) from alignment at H-elongata_contig52424:342..539-

>mRNA_H-elongata_contig52424.12549.1 ID=mRNA_H-elongata_contig52424.12549.1|Name=mRNA_H-elongata_contig52424.12549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig52424:342..539- (Himanthalia elongata Himel1 dioecious)
ATGGACTTGCAGAGCGGCCCAACGTTTGAAGACCTATCGATCGACGATGA
TCTCAACCAGCTAGAGAGAGTCGTCCGGTATAGCAGCAGTTCCATCGCGC
TGCAGCGTCTCGTTCACGTTAAGGTGAAGAAGGGGGGTCATACTGTTCAA
TCGCGGGCTCGCTGCTGTCAGAGGCTGGTGCTTATGGACTTGCAGAGCGG
CCCAACGTTTGAAGACCTATCGATCGACGATGATCTCAACCAGCTAGAGA
GAGTCGTCCGGTATAGCAGCAGTTCCATCGCGCTGCAGCGTCTCGTTCAC
GTTAAGGTGAAGAAGGGGGGTCATACTGTTCAATCGCGGGCTCGCTGCTG
TCAGAGGCTGGTGCTT
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