mRNA_H-elongata_contig52390.12548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52390.12548.1
Unique NamemRNA_H-elongata_contig52390.12548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52390.12548.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.930e-19
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:  241 VVFSWSFLGFEAHFSIRGRRRRFLWPFSSLAFVAQLYLLIFIASVAIWSFGTWA 402
            +VF+WSFLGFE HFSIRGR+RRFL PFSSL+FVA LYLL+F  S+AIW FGTWA
Sbjct:    1 MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWA 54
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BLAST of mRNA_H-elongata_contig52390.12548.1 vs. uniprot
Match: A0A7S3HFS1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFS1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.460e-12
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:   58 KKWASFVLLGPLLPTMFAIILIVIGGAIVKADNIDDNADIACGYPIDIFIKAAIGNSYFLLVVFSWSFLGFEAHFSIR--GRRRRFLWPFSSLAFVAQLYLLIFIASVAIWSFGT 396
            KKWA  VL+GP LP +FA+I+IV G  ++            CGY +D FI AA+   Y  L+VFSW ++G     S+   G     L PF SL ++   Y ++ + S  +W  G+
Sbjct:   31 KKWAGLVLIGPFLPAVFALIVIVCGQLVLNTWTG------TCGYALDSFISAAVAVCYLFLMVFSWVYVGDTVILSLPALGIELTLLTPFKSLKYIVFYYFVVAVVSFIVWLVGS 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52390.12548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G443_ECTSI5.930e-1977.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HFS1_9STRA2.460e-1236.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52390contigH-elongata_contig52390:3..1418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-25_000620.1
Exons3
Model size402
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52390.12548.1prot_H-elongata_contig52390.12548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52390 3..1418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.1306245-CDS-H-elongata_contig52390:2..241622930857.1306245-CDS-H-elongata_contig52390:2..24Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52390 3..24 -
1691679599.9123232-CDS-H-elongata_contig52390:2..241691679599.9123232-CDS-H-elongata_contig52390:2..24Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52390 3..24 -
1622930857.147347-CDS-H-elongata_contig52390:361..5941622930857.147347-CDS-H-elongata_contig52390:361..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52390 362..594 -
1691679599.9250522-CDS-H-elongata_contig52390:361..5941691679599.9250522-CDS-H-elongata_contig52390:361..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52390 362..594 -
1622930857.1592207-CDS-H-elongata_contig52390:1271..14181622930857.1592207-CDS-H-elongata_contig52390:1271..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52390 1272..1418 -
1691679599.9334648-CDS-H-elongata_contig52390:1271..14181691679599.9334648-CDS-H-elongata_contig52390:1271..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52390 1272..1418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52390.12548.1

>prot_H-elongata_contig52390.12548.1 ID=prot_H-elongata_contig52390.12548.1|Name=mRNA_H-elongata_contig52390.12548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MSDESQSPAVVLASCSVTEKKWASFVLLGPLLPTMFAIILIVIGGAIVKA
DNIDDNADIACGYPIDIFIKAAIGNSYFLLVVFSWSFLGFEAHFSIRGRR
RRFLWPFSSLAFVAQLYLLIFIASVAIWSFGTWA
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mRNA from alignment at H-elongata_contig52390:3..1418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52390.12548.1 ID=mRNA_H-elongata_contig52390.12548.1|Name=mRNA_H-elongata_contig52390.12548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-elongata_contig52390:3..1418- (Himanthalia elongata Himel1 dioecious)
ATGAGTGATGAAAGCCAATCACCCGCAGTTGTTCTCGCCTCGTGCTCGGT
GACGGAGAAAAAATGGGCGTCATTTGTTCTGTTGGGACCATTGTTGCCTA
CCATGTTCGCAATAATTCTCATCGTAATCGGCGGGGCCATAGTGAAGGTG
ATGCTTTGGGCGCTCTCTCGAAATGAATGTGTTCTTTTGAGATTTTGCCT
GAAACCTTCCTCGGCATTCCAAGAGCTAAATAGCTACTATTATCCATTAA
TCGCGCAGAATCCAATAATTGATCATGTGGATTTACACTGGCGTCGATTC
CGAAGAATCGATCAGGTGAAAGATATAACGATACGCGATTGAAGGGCGTC
TCCATATGAAGAATCACATATGATGATTTTGTGCTTAGATGTAGTTAAAA
TGTCCACATTCGACCTGACGATAGTTGATCCCCTGGGCTACACCTCTCAT
GGTGCTAAGAAGGTGTGGATGTTGGAAGGGTTCGAATGAGTTCACATGTT
TTTTAATATAAATGTCGCCCACGCCGATCTTTGAGACAAATGTCCAAGGA
TTCCTACGCCCAGCATTTAAATGATACTGTTACAGGAGCTACCGGTGACA
ATCACTTCTTTGTGTACTGACGTTCTCGCGTTTTCATCGTAATAATACTA
ACAGTACCTTGGTAGACTACATCTTACACTTGTCATATTGTAGTAATAGT
AGTAATACTCCATACACTCACACACACACACACACACACCAGCGGTATTT
TACCATAACTCGAGTGGTTCCAAGAGATACAGCCACAATTATCACGTGAT
TTGTGCGCTGACGCATGAACTCAGGCCGATAATATCGACGACAATGCAGA
CATTGCATGCGGCTATCCCATCGACATCTTCATCAAGGCCGCTATCGGGA
ACAGCTATTTTCTTCTTGTGGTGTTTTCCTGGTCATTCTTAGGATTCGAG
GCTCACTTTTCCATCCGGGGTCGGCGGAGGCGTTTCTTGTGGCCCTTCTC
TAGCCTTGCATTCGTCGCGCAGCTGTATCTGCTGATTTTCATCGCTAGCG
TTGCCATGTAAGCCACTCATTCACTCATAGCTTATATTTCATTTCTGCGG
TCGCTGCCCCCTCATTCATTCGATCGTCAAAATACATCGCTGGTGGTTTA
TGTGGCTCGTTGTGCGGGCCGTGGCAAACAACGCGCTGTGGGGTGTTTCT
GCACACGGGGGTGCACCTGATGATCGCTACAGGGTGTATGTGTACAGTAT
TTCCATCGTGGACTCTCCGAAGCTCGCAACTCGCAATTCGCTCGCCGTCA
ATTCTCGCCAAGGCGTGGTGAACAGAAACAATCCCTTCTCGTACAAGCTA
TGCATGAAAAATAGACCCCCCGCACAGTCGGAACCGAAGATCAGATGGAG
TTTTGGAACCTGGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig52390:3..1418-

>mRNA_H-elongata_contig52390.12548.1 ID=mRNA_H-elongata_contig52390.12548.1|Name=mRNA_H-elongata_contig52390.12548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig52390:3..1418- (Himanthalia elongata Himel1 dioecious)
ATGAGTGATGAAAGCCAATCACCCGCAGTTGTTCTCGCCTCGTGCTCGGT
GACGGAGAAAAAATGGGCGTCATTTGTTCTGTTGGGACCATTGTTGCCTA
CCATGTTCGCAATAATTCTCATCGTAATCGGCGGGGCCATAGTGAAGATG
AGTGATGAAAGCCAATCACCCGCAGTTGTTCTCGCCTCGTGCTCGGTGAC
GGAGAAAAAATGGGCGTCATTTGTTCTGTTGGGACCATTGTTGCCTACCA
TGTTCGCAATAATTCTCATCGTAATCGGCGGGGCCATAGTGAAGGCCGAT
AATATCGACGACAATGCAGACATTGCATGCGGCTATCCCATCGACATCTT
CATCAAGGCCGCTATCGGGAACAGCTATTTTCTTCTTGTGGTGTTTTCCT
GGTCATTCTTAGGATTCGAGGCTCACTTTTCCATCCGGGGTCGGCGGAGG
CGTTTCTTGTGGCCCTTCTCTAGCCTTGCATTCGTCGCGCAGCTGTATCT
GCTGATTTTCATCGCTAGCGTTGCCATGCCGATAATATCGACGACAATGC
AGACATTGCATGCGGCTATCCCATCGACATCTTCATCAAGGCCGCTATCG
GGAACAGCTATTTTCTTCTTGTGGTGTTTTCCTGGTCATTCTTAGGATTC
GAGGCTCACTTTTCCATCCGGGGTCGGCGGAGGCGTTTCTTGTGGCCCTT
CTCTAGCCTTGCATTCGTCGCGCAGCTGTATCTGCTGATTTTCATCGCTA
GCGTTGCCATATGGAGTTTTGGAACCTGGGCGATGGAGTTTTGGAACCTG
GGCG
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