mRNA_H-elongata_contig52383.12544.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: D8LI97_ECTSI (Transmembrane protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI97_ECTSI) HSP 1 Score: 207 bits (528), Expect = 4.040e-64 Identity = 103/140 (73.57%), Postives = 121/140 (86.43%), Query Frame = 1
Query: 4 AFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDIAARKNGGKSKPKGAGRERKPLKQ 423
AF +AVDWSE WIQG+L FHL LW+FFIV R+SFG+QV LFAV+L GTR SE++NT R+RWQ FSRQNYFDEHG+FMGVMWAGPLLILGFTMLV+LLCQ ASLLV VKT+QFKR+IAA+K+GGKSK K +++K KQ
Sbjct: 63 AFRSAVDWSEPWIQGILVFHLLLWVFFIVTRRSFGAQVGLFAVVLTGTRLSEFINTCLRDRWQNFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQ 202
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A7S2Y0G5_9STRA (Transmembrane protein 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G5_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.360e-29 Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = 1
Query: 4 AFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDI 354
AF AAV+W ERWIQG+LAFH+ +++ +V RK+F QV +F +I+ SE +NT +N WQ FS Q+YFD +GLFM VM+AGPLL++GF L N L +A LLVKVK + K+ +
Sbjct: 80 AFKAAVNWEERWIQGILAFHVIVFVLMLVFRKNFNVQVCIFLLIVGLVSCSETINTLGQNHWQEFSTQDYFDPNGLFMMVMFAGPLLLIGFLQLFNFLLISADLLVKVKRAELKKHM 196
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A835ZFQ2_9STRA (Transmembrane protein 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ2_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.030e-28 Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 4 AFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDIAARKN 369
AFCAAVDWSE WIQ +L FH+ + ++ R Q+ LF I R +E+ N + RW+ F+RQNYFDE G+F+GV+W PLL++ ML+ + ++A LLV VK Q +R+IAARK+
Sbjct: 39 AFCAAVDWSETWIQAILCFHVAVAAAALLSRNRLNCQIALFLSICALVRGAEWANAYAARRWRDFARQNYFDERGVFVGVVWCAPLLLVLLGMLLGFVVRSARLLVTVKRAQLRREIAARKS 160
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: F0Y7C0_AURAN (Transmembrane protein 18 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C0_AURAN) HSP 1 Score: 111 bits (278), Expect = 4.560e-27 Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 1 SAFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDIAAR 363
+AF AAVDWSERWIQG+LA+H +LW+ F+ RK + QV LF + + +E +N W+ F+ QNYFD+HG+F G ++ P+L L ML+N L AA +LV VK +FK + A+
Sbjct: 31 AAFRAAVDWSERWIQGVLAWHASLWVVFLAFRKVYEVQVGLFFGVTIAVGLAERLNALGAAHWEKFATQNYFDDHGIFAGALFCAPMLALSLCMLLNFLHLAAHMLVDVKRREFKDHLTAK 151
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A7S2CTX0_9STRA (Transmembrane protein 18 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTX0_9STRA) HSP 1 Score: 109 bits (272), Expect = 6.070e-26 Identity = 55/121 (45.45%), Postives = 81/121 (66.94%), Query Frame = 1
Query: 4 AFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDIAARK 366
AF AAVDW+E+WIQGLL H LW+ + R+ F QV +F ++ SSE++N+ RWQ+FS Q+YFD G F+ VM+AGPLL L ++N L +A++LV+VK + K ++A++K
Sbjct: 57 AFIAAVDWNEKWIQGLLLGHFLLWVITLGFRRRFYLQVFIFFMVCAMVWSSEHINSAAHVRWQSFSTQDYFDPSGFFISVMFAGPLLALALFQMINFLIISANMLVEVKRNELKTNLASKK 177
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A7S2CJE4_9STRA (Transmembrane protein 18 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJE4_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.990e-25 Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 4 AFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDIAA 360
AFCAAVDWSERW++ L+A H LW+ + RK F Q+ +F ++ +SE +NT W++FS Q+YFD G F VM++GPLL+L ++N L +A LLV VK +FK+ A
Sbjct: 61 AFCAAVDWSERWVKALVAGHAVLWIVTLCTRKRFNFQIGVFFLVCALVWASETLNTLAHKNWRSFSTQDYFDSAGFFTAVMYSGPLLLLAMLQMMNFLALSAELLVVVKKNEFKQQREA 179
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A7S4A3H0_9STRA (Transmembrane protein 18 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3H0_9STRA) HSP 1 Score: 107 bits (267), Expect = 7.080e-25 Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 1 SAFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFK 345
+AF AAVDW E WI+ LL +HL+LW+ F+ RK+F Q LF I +E +N RW+ F+ QNYFDE G+F G+M PLL L F ML+N L A+S+LV VK +F+
Sbjct: 59 AAFIAAVDWRENWIRCLLLWHLSLWVLFVFTRKNFPVQCGLFFGIAACVALAETLNGLCAKRWEKFATQNYFDERGVFAGIMLCAPLLALAFAMLLNFLVMASSMLVTVKRAEFR 173
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A7S2SGF8_9STRA (Transmembrane protein 18 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGF8_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.300e-24 Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 4 AFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKR 348
AF AAVDWSERWIQ LL FH+ LW+ + R+ Q F + S+E MNT+ WQ FS+Q+YF +G F+GVM+A PLL L ++N LC AA+LLV+VK ++ +R
Sbjct: 58 AFTAAVDWSERWIQALLGFHVALWMITLWTRRYIWWQCGTFFAVCGLVWSAEPMNTWAAAHWQDFSKQDYFQPNGFFVGVMYAAPLLALAMFQMINFLCIAANLLVEVKRKELRR 172
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: A0A8J5Y564_DIALT (Transmembrane protein 18 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y564_DIALT) HSP 1 Score: 103 bits (256), Expect = 8.300e-24 Identity = 52/122 (42.62%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 7 FCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFKRDIAARKNG 372
F A+D++ERWI LLAFH LW F I+ R+ +Q LF +++GTR++E++N W+ F+ QNYFD+HG+FM VMW+ PLL F +++ L + +LLV+VK + + AR G
Sbjct: 38 FVHAIDFTERWIALLLAFHAILWAFIILTRERTQAQAFLFLALVLGTRAAEWLNGLGAAHWEAFAGQNYFDKHGVFMSVMWSAPLLGDAFLIILFALRSSVALLVQVKRAELRHTRKARARG 159
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Match: UPI0009013488 (transmembrane protein 18 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009013488) HSP 1 Score: 102 bits (255), Expect = 1.200e-23 Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 7 FCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRSSEYMNTFFRNRWQTFSRQNYFDEHGLFMGVMWAGPLLILGFTMLVNLLCQAASLLVKVKTEQFK 345
F A+DW+E W+ GL++FH+ L L + LRK+ SQ+ LF + L G +E +N W++F+RQNYFD HGLF+ V+W+GPLL++ +LVN L L+V+ K + +
Sbjct: 40 FFHAIDWTEPWLVGLISFHVVLLLLAVFLRKNINSQMFLFLLALGGVYFAENLNKILAANWKSFARQNYFDAHGLFLSVLWSGPLLVISIIILVNTLFSMCYLIVRWKKAELR 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52383.12544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52383.12544.1 >prot_H-elongata_contig52383.12544.1 ID=prot_H-elongata_contig52383.12544.1|Name=mRNA_H-elongata_contig52383.12544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp SAFCAAVDWSERWIQGLLAFHLTLWLFFIVLRKSFGSQVVLFAVILVGTRback to top mRNA from alignment at H-elongata_contig52383:1329..3123- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52383.12544.1 ID=mRNA_H-elongata_contig52383.12544.1|Name=mRNA_H-elongata_contig52383.12544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1795bp|location=Sequence derived from alignment at H-elongata_contig52383:1329..3123- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52383:1329..3123- >mRNA_H-elongata_contig52383.12544.1 ID=mRNA_H-elongata_contig52383.12544.1|Name=mRNA_H-elongata_contig52383.12544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig52383:1329..3123- (Himanthalia elongata Himel1 dioecious)back to top |