prot_H-elongata_contig5226.12529.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5226.12529.1
Unique Nameprot_H-elongata_contig5226.12529.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length150
Homology
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BLAST of mRNA_H-elongata_contig5226.12529.1 vs. uniprot
Match: D7FW95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW95_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.400e-48
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 0 
Query:    1 GHTEVVSLLHNADGRIEAWEAKERTDEHATQRIECGNDGCRHRDRRDKIGRHERSECLRRPAGCPACGENFLAGDMGFHQERECAKTRDTCPNVMKGCYEVMPRDQIATHVMHACKFRRVECRRQCGATLDAHQLES 137
            G+ EVV+LL NADGRIE WEA ER  EHA++R+ECGN+GCRHRDRRD++ RHER+EC RRPAGCPACG+   AGD+                N   GCY+VMP ++I+ H+ H CKFRRV+CRR CGA++ A  L+S
Sbjct:  448 GYDEVVTLLDNADGRIEVWEAGERAQEHASERVECGNEGCRHRDRRDRMERHERTECPRRPAGCPACGKKLAAGDLPQXXXXXXXXXXXXXXNAFLGCYDVMPHERISAHIRHMCKFRRVDCRRGCGASVIARDLDS 584
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BLAST of mRNA_H-elongata_contig5226.12529.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.820e-28
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 0 
Query:   33 IECGNDGCRHRDRRDKIGRHERSECLRRPAGCPACGENFLAGDMGFHQERECAKTRDTCPNVMKGCYEVMPRDQIATHVMHACKFRRVECRRQCGATLDAHQLESHEQEHCRLSERPC 150
            I+CGN+GCRHRDRRD++ RHER+EC RRPAGCP CG+   AGD+  H+E+      D CPN   GCY+ MP ++IA H+ H     +  C   CG  +   ++++H ++ CR  +  C
Sbjct:  375 IKCGNEGCRHRDRRDRMQRHERTECPRRPAGCPTCGKKLAAGDLPQHKEKXXXXXIDACPNAFLGCYDAMPHERIAAHIRHM--LSKHPCVFGCGENITKAKVDAHIKKDCRKRKVRC 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5226.12529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW95_ECTSI1.400e-4857.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H6_9PHAE1.820e-2844.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 26..87
e-value: 8.5E-6
score: 27.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 88..138
e-value: 3.0E-6
score: 29.4
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 52..110
e-value: 1.4E-4
score: 22.5
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 79..136
score: 10.349
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 91..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5226contigH-elongata_contig5226:2234..3548 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5226.12529.1mRNA_H-elongata_contig5226.12529.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5226 2234..3548 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5226.12529.1 ID=prot_H-elongata_contig5226.12529.1|Name=mRNA_H-elongata_contig5226.12529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
GHTEVVSLLHNADGRIEAWEAKERTDEHATQRIECGNDGCRHRDRRDKIG
RHERSECLRRPAGCPACGENFLAGDMGFHQERECAKTRDTCPNVMKGCYE
VMPRDQIATHVMHACKFRRVECRRQCGATLDAHQLESHEQEHCRLSERPC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like