mRNA_H-elongata_contig115876.1253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115876.1253.1
Unique NamemRNA_H-elongata_contig115876.1253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.790e-42
Identity = 79/93 (84.95%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            +V+LFMVLTA+IPRY ARLDCALFMKGFSSDA+FLSEK+ LV  A+LEV+DS RLKRLIEVVLAMGNYLNEGTRNG+A+AIKLASLLKLDTVK
Sbjct:  854 EVTLFMVLTAKIPRYTARLDCALFMKGFSSDADFLSEKLGLVSIAVLEVVDSPRLKRLIEVVLAMGNYLNEGTRNGEAKAIKLASLLKLDTVK 946
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: D8LCH4_ECTSI (FH2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 7.460e-22
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            +V  F+VL +RIP YQ RL CA  M+ F  D      KI +V +AI +V DS++LKRL+ VVLA+GN+LNEGT +GDA+AI L SLLK+ TV+
Sbjct:  854 EVEQFLVLASRIPNYQIRLRCAGDMQAFEPDTASALAKITIVSDAISQVTDSAKLKRLLAVVLAVGNFLNEGTGSGDAKAITLESLLKITTVR 946
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A835Z2Y1_9STRA (FH2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.880e-21
Identity = 41/93 (44.09%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            +V+  ++  +++PRY AR+D  +F++ +  DAE +  ++++V  A++E ++S  L +++E+VLA+GN+LNEGT  GDA+ IKLASLL+L+TVK
Sbjct:  661 EVTQLLLAISKVPRYTARMDSTIFIRAYVEDAERIEARVKMVHMAVMEALESKHLPKVLEIVLALGNFLNEGTSKGDAKGIKLASLLQLETVK 753
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A6H5JDW8_9PHAE (FH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.260e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            +V  F+VL   IP Y+ RL CA +++ F  +     EKI +V +AI +V +S++LKRL+ VVLA+GN+LNEG+ NGDA+AI L SLLK+ TV+
Sbjct:  869 EVEQFLVLATGIPDYEIRLRCAGYIQAFEPERASALEKITIVSDAISQVTNSAKLKRLLAVVLAVGNFLNEGSSNGDAKAITLESLLKITTVR 961
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A2R5G7T1_9STRA (Formin-H n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7T1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.030e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   13 FMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            F++  + IP  + RL+       F SD   + EKIRLV EA +E+  S +L++L+E+VLA+GNYLN  T  G A   KL +L KLDT+K
Sbjct:  842 FLLAVSSIPGLKGRLEAVACRHNFESDTARIFEKIRLVREACIEISKSKQLQQLLEIVLAVGNYLNGDTPRGGAWGFKLDALGKLDTIK 930
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A7S3T8Y7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T8Y7_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 8.080e-13
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            Q   FM    ++PRYQ R+ C L    F      +SE + LV +A+ EV  S  LK+++++ LA+GNYLN GT  G A   KL +L KL   K
Sbjct:   73 QAEKFMRAVGKVPRYQLRVKCMLIRATFDEKVAEISESVSLVAQAVKEVRTSPALKKVLQMTLALGNYLNGGTNKGAAWGFKLDTLSKLSGTK 165
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A7S3TAW8_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TAW8_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 8.280e-13
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            Q   FM    ++PRYQ R+ C L    F      +SE + LV +A+ EV  S  LK+++++ LA+GNYLN GT  G A   KL +L KL   K
Sbjct:  245 QAEKFMRAVGKVPRYQLRVKCMLIRATFDEKVAEISESVSLVAQAVKEVRTSPALKKVLQMTLALGNYLNGGTNKGAAWGFKLDTLSKLSGTK 337
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: R1F2A9_EMIHU (FH2 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F2A9_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 8.340e-13
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 QVSLFMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            Q   FM    ++PRYQ R+ C L    F      +SE + LV +A+ EV  S  LK+++++ LA+GNYLN GT  G A   KL +L KL   K
Sbjct:  427 QAEKFMRAVGKVPRYQLRVKCMLIRATFDEKVAEISESVSLVAQAVKEVRTSPALKKVLQMTLALGNYLNGGTNKGAAWGFKLDTLSKLSGTK 519
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A6G0WUJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUJ6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-12
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   13 FMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            F+V  A+I R Q ++   LF+  F +  + L+E++R++  A  +V+ S RL R  E++LA+GN LNEGT   DA  + LASLLKL   +
Sbjct:  839 FLVDMAKIYRVQEKIHVLLFVVQFPTAIQQLNERLRVISLACHQVLSSERLPRYFEIILALGNVLNEGTSQADASGVTLASLLKLSETR 927
[Close]
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Match: A0A024TK83_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TK83_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-12
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   13 FMVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRLKRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK 279
            F+V  A++ R Q ++   LF++ FS+  + L++++R++  A  +++ S RL R  EV+LA+GN LNEGT   +A  + LASLLKL   +
Sbjct:  862 FLVDMAKVARVQEKIHVMLFVQQFSTLIDELNDRLRILSVACHQILSSERLPRYFEVILALGNVLNEGTEQANASGVTLASLLKLSETR 950
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115876.1253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPH1_ECTSI5.790e-4284.95Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D8LCH4_ECTSI7.460e-2254.84FH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z2Y1_9STRA1.880e-2144.09FH2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JDW8_9PHAE4.260e-2050.54FH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2R5G7T1_9STRA7.030e-1444.94Formin-H n=1 Tax=Hondaea fermentalgiana TaxID=2315... [more]
A0A7S3T8Y7_EMIHU8.080e-1340.86Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3TAW8_EMIHU8.280e-1340.86Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
R1F2A9_EMIHU8.340e-1340.86FH2 domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A6G0WUJ6_9STRA1.590e-1241.57Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A024TK83_9STRA1.600e-1239.33Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115876contigH-elongata_contig115876:1067..1348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1e-33
Seed eggNOG ortholog2880.D7FPH1
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
Ec32 ortholog descriptionFormin-like 1
Ec32 orthologEc-14_004910.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.9963489-CDS-H-elongata_contig115876:1066..13331622929671.9963489-CDS-H-elongata_contig115876:1066..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115876 1067..1333 -
1691679113.9625022-CDS-H-elongata_contig115876:1066..13331691679113.9625022-CDS-H-elongata_contig115876:1066..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115876 1067..1333 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.0158327-UTR-H-elongata_contig115876:1333..13481622929672.0158327-UTR-H-elongata_contig115876:1333..1348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115876 1334..1348 -
1691679113.9755065-UTR-H-elongata_contig115876:1333..13481691679113.9755065-UTR-H-elongata_contig115876:1333..1348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115876 1334..1348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115876.1253.1prot_H-elongata_contig115876.1253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115876 1067..1333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115876.1253.1

>prot_H-elongata_contig115876.1253.1 ID=prot_H-elongata_contig115876.1253.1|Name=mRNA_H-elongata_contig115876.1253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MVLTARIPRYQARLDCALFMKGFSSDAEFLSEKIRLVDEAILEVIDSSRL
KRLIEVVLAMGNYLNEGTRNGDARAIKLASLLKLDTVK*
back to top

mRNA from alignment at H-elongata_contig115876:1067..1348-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115876.1253.1 ID=mRNA_H-elongata_contig115876.1253.1|Name=mRNA_H-elongata_contig115876.1253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig115876:1067..1348- (Himanthalia elongata Himel1 dioecious)
CAGGTTTCGTTGTTCATGGTGCTGACGGCACGTATTCCGCGGTACCAGGC
TCGCCTTGACTGCGCTCTATTCATGAAAGGCTTCTCCAGCGACGCCGAAT
TCTTGAGCGAAAAGATTCGGCTAGTGGACGAAGCCATTTTGGAGGTTATA
GACTCTTCAAGGCTGAAGCGTCTGATAGAGGTAGTCCTGGCGATGGGGAA
CTACCTTAACGAGGGCACGAGAAACGGCGACGCGAGGGCCATCAAGCTCG
CGTCCCTGCTGAAGCTTGACACGGTCAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig115876:1067..1348-

>mRNA_H-elongata_contig115876.1253.1 ID=mRNA_H-elongata_contig115876.1253.1|Name=mRNA_H-elongata_contig115876.1253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig115876:1067..1348- (Himanthalia elongata Himel1 dioecious)
ATGGTGCTGACGGCACGTATTCCGCGGTACCAGGCTCGCCTTGACTGCGC
TCTATTCATGAAAGGCTTCTCCAGCGACGCCGAATTCTTGAGCGAAAAGA
TTCGGCTAGTGGACGAAGCCATTTTGGAGGTTATAGACTCTTCAAGGCTG
AAGCGTCTGATAGAGGTAGTCCTGGCGATGGGGAACTACCTTAACGAGGG
CACGAGAAACGGCGACGCGAGGGCCATCAAGCTCGCGTCCCTGCTGAAGC
TTGACACGGTCAAGTGAATGGTGCTGACGGCACGTATTCCGCGGTACCAG
GCTCGCCTTGACTGCGCTCTATTCATGAAAGGCTTCTCCAGCGACGCCGA
ATTCTTGAGCGAAAAGATTCGGCTAGTGGACGAAGCCATTTTGGAGGTTA
TAGACTCTTCAAGGCTGAAGCGTCTGATAGAGGTAGTCCTGGCGATGGGG
AACTACCTTAACGAGGGCACGAGAAACGGCGACGCGAGGGCCATCAAGCT
CGCGTCCCTGCTGAAGCTTGACACGGTCAAGTGA
back to top