mRNA_H-elongata_contig5226.12529.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5226.12529.1
Unique NamemRNA_H-elongata_contig5226.12529.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5226.12529.1 vs. uniprot
Match: D7FW95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW95_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.400e-48
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1 
Query:    1 GHTEVVSLLHNADGRIEAWEAKERTDEHATQRIECGNDGCRHRDRRDKIGRHERSECLRRPAGCPACGENFLAGDMGFHQERECAKTRDTCPNVMKGCYEVMPRDQIATHVMHACKFRRVECRRQCGATLDAHQLES 411
            G+ EVV+LL NADGRIE WEA ER  EHA++R+ECGN+GCRHRDRRD++ RHER+EC RRPAGCPACG+   AGD+                N   GCY+VMP ++I+ H+ H CKFRRV+CRR CGA++ A  L+S
Sbjct:  448 GYDEVVTLLDNADGRIEVWEAGERAQEHASERVECGNEGCRHRDRRDRMERHERTECPRRPAGCPACGKKLAAGDLPQXXXXXXXXXXXXXXNAFLGCYDVMPHERISAHIRHMCKFRRVDCRRGCGASVIARDLDS 584
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BLAST of mRNA_H-elongata_contig5226.12529.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.820e-28
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:   97 IECGNDGCRHRDRRDKIGRHERSECLRRPAGCPACGENFLAGDMGFHQERECAKTRDTCPNVMKGCYEVMPRDQIATHVMHACKFRRVECRRQCGATLDAHQLESHEQEHCRLSERPC 450
            I+CGN+GCRHRDRRD++ RHER+EC RRPAGCP CG+   AGD+  H+E+      D CPN   GCY+ MP ++IA H+ H     +  C   CG  +   ++++H ++ CR  +  C
Sbjct:  375 IKCGNEGCRHRDRRDRMQRHERTECPRRPAGCPTCGKKLAAGDLPQHKEKXXXXXIDACPNAFLGCYDAMPHERIAAHIRHM--LSKHPCVFGCGENITKAKVDAHIKKDCRKRKVRC 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5226.12529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW95_ECTSI1.400e-4857.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H6_9PHAE1.820e-2844.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5226contigH-elongata_contig5226:2234..3548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog112098.XP_008611710.1
KEGG koko:K21440
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size450
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5226.12529.1prot_H-elongata_contig5226.12529.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5226 2234..3548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.9340787-CDS-H-elongata_contig5226:2233..23421622930854.9340787-CDS-H-elongata_contig5226:2233..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5226 2234..2342 -
1691679599.1086183-CDS-H-elongata_contig5226:2233..23421691679599.1086183-CDS-H-elongata_contig5226:2233..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5226 2234..2342 -
1622930854.9497044-CDS-H-elongata_contig5226:2779..30251622930854.9497044-CDS-H-elongata_contig5226:2779..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5226 2780..3025 -
1691679599.1197832-CDS-H-elongata_contig5226:2779..30251691679599.1197832-CDS-H-elongata_contig5226:2779..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5226 2780..3025 -
1622930854.9646597-CDS-H-elongata_contig5226:3453..35481622930854.9646597-CDS-H-elongata_contig5226:3453..3548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5226 3454..3548 -
1691679599.1376615-CDS-H-elongata_contig5226:3453..35481691679599.1376615-CDS-H-elongata_contig5226:3453..3548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5226 3454..3548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5226.12529.1

>prot_H-elongata_contig5226.12529.1 ID=prot_H-elongata_contig5226.12529.1|Name=mRNA_H-elongata_contig5226.12529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
GHTEVVSLLHNADGRIEAWEAKERTDEHATQRIECGNDGCRHRDRRDKIG
RHERSECLRRPAGCPACGENFLAGDMGFHQERECAKTRDTCPNVMKGCYE
VMPRDQIATHVMHACKFRRVECRRQCGATLDAHQLESHEQEHCRLSERPC
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mRNA from alignment at H-elongata_contig5226:2234..3548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5226.12529.1 ID=mRNA_H-elongata_contig5226.12529.1|Name=mRNA_H-elongata_contig5226.12529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1315bp|location=Sequence derived from alignment at H-elongata_contig5226:2234..3548- (Himanthalia elongata Himel1 dioecious)
GGACACACCGAAGTAGTCTCATTGTTACACAACGCCGACGGTAGAATCGA
AGCTTGGGAAGCCAAGGAACGCACCGACGAGCACGCCACCCAGAGGTCAG
CTGCTTCTAACGTCCCATGACAAAATTACATCAAGGACGTTACGCCAGAA
CGCTATCTAGAATGGTTTCCCAAACAGATAGTTGGTCTCCTGGACTGCAC
CTCTCACGGTGCTAAGAAAGTGTAGATGTTCGGAGGATTTGAATGAGTTA
ATATATTTTTGTTAAATAAAAATACCCGAGGGACAGTCTTAACACTGTAG
TATTACGAGGGTTAACCGACCACTTAAACACGTTTTGACTTGCCGCTTTT
TGAGAGCACTTGATATATCGCTGCCGTGTTGCTTAAACGGGGCCCCTAGC
ATCACGCCAGTAGCGCTTCGCCCATTCATGTCATGTATTTTTCTCATCGT
CCCGGACTTCTTCGCAACCCTACTGGGGTTGGCAAACACGGATGCGTTCG
TTCCGCGCGGGCTTTCGTCGCAGGATAGAATGTGGTAACGATGGCTGTCG
GCACCGAGACCGGCGGGATAAGATAGGCCGACACGAGCGCTCCGAGTGCC
TACGGCGTCCCGCAGGATGTCCTGCCTGCGGCGAGAACTTTCTGGCAGGA
GACATGGGGTTCCACCAAGAAAGAGAGTGTGCTAAAACAAGGGACACGTG
CCCCAACGTGATGAAGGGCTGCTACGAGGTCATGCCGCGCGATCAGATCG
CGACACACGTCATGCATGCGTGAGTTTTGCGCAGGGAGAAAACAATACCA
CGATCAATATGATCGACTTGCAAATTCTTGGTCCAGAGAGACGTTCCATT
CGGTCGGGTTTGGTCTGGTTAATCGTATGCGTGCTAGGGGAGAGTGCGCC
CTGTGCGAGGGAACCCGATCGCCTGGTTGCCGATATATTTGATTCTGGAT
TGCTTCTCTGTGTCGGACATATTCAACCCTTTCAAATGACGCAACGAGAT
CGTCCTTGTCGCCCGACAATGTGTTTATTTGGTTTACTTTCGTCTTGTTC
AAATAGCGTACAGTTCGAGCGCACGTTTCCCAACAACAACGTCTCACACC
GGAACGTGCCCACCCACACAACAGCGTGTCTGATCCATCACTGCTAATCC
GTCTCTCCTGCTCGGAAACATTTTGATCCTTTCATCTTTCGATTATGCAC
CAACAGATGCAAATTTCGTCGTGTTGAGTGCCGCCGACAGTGCGGGGCAA
CACTTGACGCTCATCAATTGGAGTCTCACGAGCAGGAGCACTGCCGGTTA
AGCGAACGTCCCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig5226:2234..3548-

>mRNA_H-elongata_contig5226.12529.1 ID=mRNA_H-elongata_contig5226.12529.1|Name=mRNA_H-elongata_contig5226.12529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig5226:2234..3548- (Himanthalia elongata Himel1 dioecious)
GGACACACCGAAGTAGTCTCATTGTTACACAACGCCGACGGTAGAATCGA
AGCTTGGGAAGCCAAGGAACGCACCGACGAGCACGCCACCCAGAGGGACA
CACCGAAGTAGTCTCATTGTTACACAACGCCGACGGTAGAATCGAAGCTT
GGGAAGCCAAGGAACGCACCGACGAGCACGCCACCCAGAGGATAGAATGT
GGTAACGATGGCTGTCGGCACCGAGACCGGCGGGATAAGATAGGCCGACA
CGAGCGCTCCGAGTGCCTACGGCGTCCCGCAGGATGTCCTGCCTGCGGCG
AGAACTTTCTGGCAGGAGACATGGGGTTCCACCAAGAAAGAGAGTGTGCT
AAAACAAGGGACACGTGCCCCAACGTGATGAAGGGCTGCTACGAGGTCAT
GCCGCGCGATCAGATCGCGACACACGTCATGCATGCGATAGAATGTGGTA
ACGATGGCTGTCGGCACCGAGACCGGCGGGATAAGATAGGCCGACACGAG
CGCTCCGAGTGCCTACGGCGTCCCGCAGGATGTCCTGCCTGCGGCGAGAA
CTTTCTGGCAGGAGACATGGGGTTCCACCAAGAAAGAGAGTGTGCTAAAA
CAAGGGACACGTGCCCCAACGTGATGAAGGGCTGCTACGAGGTCATGCCG
CGCGATCAGATCGCGACACACGTCATGCATGCATGCAAATTTCGTCGTGT
TGAGTGCCGCCGACAGTGCGGGGCAACACTTGACGCTCATCAATTGGAGT
CTCACGAGCAGGAGCACTGCCGGTTAAGCGAACGTCCCTGCATGCAAATT
TCGTCGTGTTGAGTGCCGCCGACAGTGCGGGGCAACACTTGACGCTCATC
AATTGGAGTCTCACGAGCAGGAGCACTGCCGGTTAAGCGAACGTCCCTGC
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