mRNA_H-elongata_contig5226.12530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig5226.12530.1
Unique Name	mRNA_H-elongata_contig5226.12530.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig5226.12530.1 vs. uniprot

BLAST of mRNA_H-elongata_contig5226.12530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig5226	contig	H-elongata_contig5226:9728..11065 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	1338
Cds size	1338
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930854.8795464-CDS-H-elongata_contig5226:9727..11065	1622930854.8795464-CDS-H-elongata_contig5226:9727..11065	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5226 9728..11065 -
1691679599.0995874-CDS-H-elongata_contig5226:9727..11065	1691679599.0995874-CDS-H-elongata_contig5226:9727..11065	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5226 9728..11065 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig5226.12530.1	prot_H-elongata_contig5226.12530.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig5226 9728..11065 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig5226:9728..11065-
coding sequence from alignment at H-elongata_contig5226:9728..11065-

protein sequence of mRNA_H-elongata_contig5226.12530.1

>prot_H-elongata_contig5226.12530.1 ID=prot_H-elongata_contig5226.12530.1|Name=mRNA_H-elongata_contig5226.12530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=446bp
MCNRPGCSRYAWYGVKGGRRREFCAQHASNDMVKVVVSGKCASSNCPKGA
IYGLKGTKRAHYCAEHAVDGMVNVVTKKCSSEGCDKKPTYGVRGTRSAMF
CRPHAAEGMVDVLNRKCVQEGCLKQPSYCADGGRRPEFCAEHAKEGMTNV
KKKKCESSVCTRHAYYGAVGGKVQFCADHAEEGMVNVVSQKCNKPGCTKQ
PKYGVVGTKKPEYCAPHAPGGMVNVLRAKCAHDGCAKTPIFGVLGTRKAL
FCGTHADPEMVDVIRKPCAQEGCFARASYGYEGVNKGELCAYHAVEGMVD
VVTKKCSFEGCYTRPSYGLEDSKSLERCSIHAEEGMVNRVSKRCTLEGCN
TLASYGVAGTRKREFCVRHATWGMVDVVNKRCGNKHCEKYPTFGYIGINR
REFCVDHAAAGMVNIVGKGCARQDCPNRATCGRHGKPFPDLCTVHA

mRNA from alignment at H-elongata_contig5226:9728..11065-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig5226.12530.1 ID=mRNA_H-elongata_contig5226.12530.1|Name=mRNA_H-elongata_contig5226.12530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-elongata_contig5226:9728..11065- (Himanthalia elongata Himel1 dioecious)
ATGTGCAATCGCCCGGGCTGCTCCCGGTACGCGTGGTATGGAGTGAAAGG
CGGCAGGCGGCGGGAGTTCTGCGCGCAGCACGCCTCGAATGACATGGTGA
AGGTGGTCGTGAGCGGGAAGTGCGCGAGCTCGAACTGCCCGAAGGGCGCC
ATTTACGGTTTGAAGGGGACCAAGAGGGCTCACTACTGCGCCGAGCACGC
GGTGGATGGGATGGTGAACGTGGTGACCAAGAAGTGCTCAAGCGAGGGCT
GCGACAAGAAGCCAACGTACGGCGTGCGGGGCACAAGAAGCGCGATGTTC
TGCCGCCCACACGCGGCGGAGGGGATGGTAGACGTGCTTAACAGGAAATG
CGTCCAGGAGGGCTGTCTCAAGCAGCCGTCCTACTGCGCGGACGGGGGAA
GGAGGCCGGAGTTCTGCGCGGAGCACGCGAAGGAGGGAATGACGAACGTA
AAGAAGAAAAAATGTGAAAGCTCGGTCTGCACGAGGCACGCGTACTACGG
CGCGGTCGGCGGAAAGGTGCAGTTCTGCGCCGACCACGCCGAGGAGGGGA
TGGTCAACGTCGTGAGCCAGAAGTGCAACAAGCCGGGCTGCACGAAACAG
CCGAAGTACGGTGTTGTGGGCACTAAGAAGCCGGAGTATTGCGCGCCCCA
CGCTCCGGGGGGAATGGTAAATGTCCTTCGCGCGAAATGCGCTCACGACG
GCTGTGCCAAGACCCCAATCTTTGGCGTCCTAGGCACGCGGAAGGCACTG
TTCTGTGGCACCCACGCCGATCCTGAAATGGTGGATGTTATAAGGAAGCC
TTGCGCCCAGGAAGGCTGCTTTGCGCGGGCGTCGTACGGTTACGAGGGTG
TCAACAAGGGCGAGCTCTGCGCCTACCACGCCGTAGAAGGAATGGTGGAT
GTTGTTACCAAGAAGTGCTCGTTCGAAGGCTGCTACACGCGCCCTAGCTA
TGGCTTGGAGGACAGCAAGTCGCTGGAGCGCTGCTCCATTCACGCAGAGG
AAGGCATGGTGAACCGAGTCAGCAAGCGCTGCACTCTCGAGGGTTGCAAT
ACGCTTGCTTCGTATGGCGTCGCCGGCACTCGGAAGCGGGAGTTCTGCGT
CAGACACGCCACGTGGGGAATGGTGGACGTGGTGAACAAGAGATGTGGCA
ACAAGCACTGTGAGAAATATCCAACCTTCGGTTACATTGGCATAAACAGG
CGAGAGTTCTGCGTCGACCACGCGGCGGCGGGAATGGTGAACATCGTCGG
CAAGGGTTGCGCGCGGCAGGACTGCCCAAATCGTGCAACCTGTGGTAGAC
ACGGCAAGCCATTCCCGGACCTGTGCACCGTCCATGCC

Coding sequence (CDS) from alignment at H-elongata_contig5226:9728..11065-

>mRNA_H-elongata_contig5226.12530.1 ID=mRNA_H-elongata_contig5226.12530.1|Name=mRNA_H-elongata_contig5226.12530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2676bp|location=Sequence derived from alignment at H-elongata_contig5226:9728..11065- (Himanthalia elongata Himel1 dioecious)
ATGTGCAATCGCCCGGGCTGCTCCCGGTACGCGTGGTATGGAGTGAAAGG
CGGCAGGCGGCGGGAGTTCTGCGCGCAGCACGCCTCGAATGACATGGTGA
AGGTGGTCGTGAGCGGGAAGTGCGCGAGCTCGAACTGCCCGAAGGGCGCC
ATTTACGGTTTGAAGGGGACCAAGAGGGCTCACTACTGCGCCGAGCACGC
GGTGGATGGGATGGTGAACGTGGTGACCAAGAAGTGCTCAAGCGAGGGCT
GCGACAAGAAGCCAACGTACGGCGTGCGGGGCACAAGAAGCGCGATGTTC
TGCCGCCCACACGCGGCGGAGGGGATGGTAGACGTGCTTAACAGGAAATG
CGTCCAGGAGGGCTGTCTCAAGCAGCCGTCCTACTGCGCGGACGGGGGAA
GGAGGCCGGAGTTCTGCGCGGAGCACGCGAAGGAGGGAATGACGAACGTA
AAGAAGAAAAAATGTGAAAGCTCGGTCTGCACGAGGCACGCGTACTACGG
CGCGGTCGGCGGAAAGGTGCAGTTCTGCGCCGACCACGCCGAGGAGGGGA
TGGTCAACGTCGTGAGCCAGAAGTGCAACAAGCCGGGCTGCACGAAACAG
CCGAAGTACGGTGTTGTGGGCACTAAGAAGCCGGAGTATTGCGCGCCCCA
CGCTCCGGGGGGAATGGTAAATGTCCTTCGCGCGAAATGCGCTCACGACG
GCTGTGCCAAGACCCCAATCTTTGGCGTCCTAGGCACGCGGAAGGCACTG
TTCTGTGGCACCCACGCCGATCCTGAAATGGTGGATGTTATAAGGAAGCC
TTGCGCCCAGGAAGGCTGCTTTGCGCGGGCGTCGTACGGTTACGAGGGTG
TCAACAAGGGCGAGCTCTGCGCCTACCACGCCGTAGAAGGAATGGTGGAT
GTTGTTACCAAGAAGTGCTCGTTCGAAGGCTGCTACACGCGCCCTAGCTA
TGGCTTGGAGGACAGCAAGTCGCTGGAGCGCTGCTCCATTCACGCAGAGG
AAGGCATGGTGAACCGAGTCAGCAAGCGCTGCACTCTCGAGGGTTGCAAT
ACGCTTGCTTCGTATGGCGTCGCCGGCACTCGGAAGCGGGAGTTCTGCGT
CAGACACGCCACGTGGGGAATGGTGGACGTGGTGAACAAGAGATGTGGCA
ACAAGCACTGTGAGAAATATCCAACCTTCGGTTACATTGGCATAAACAGG
CGAGAGTTCTGCGTCGACCACGCGGCGGCGGGAATGGTGAACATCGTCGG
CAAGGGTTGCGCGCGGCAGGACTGCCCAAATCGTGCAACCTGTGGTAGAC
ACGGCAAGCCATTCCCGGACCTGTGCACCGTCCATGCCATGTGCAATCGC
CCGGGCTGCTCCCGGTACGCGTGGTATGGAGTGAAAGGCGGCAGGCGGCG
GGAGTTCTGCGCGCAGCACGCCTCGAATGACATGGTGAAGGTGGTCGTGA
GCGGGAAGTGCGCGAGCTCGAACTGCCCGAAGGGCGCCATTTACGGTTTG
AAGGGGACCAAGAGGGCTCACTACTGCGCCGAGCACGCGGTGGATGGGAT
GGTGAACGTGGTGACCAAGAAGTGCTCAAGCGAGGGCTGCGACAAGAAGC
CAACGTACGGCGTGCGGGGCACAAGAAGCGCGATGTTCTGCCGCCCACAC
GCGGCGGAGGGGATGGTAGACGTGCTTAACAGGAAATGCGTCCAGGAGGG
CTGTCTCAAGCAGCCGTCCTACTGCGCGGACGGGGGAAGGAGGCCGGAGT
TCTGCGCGGAGCACGCGAAGGAGGGAATGACGAACGTAAAGAAGAAAAAA
TGTGAAAGCTCGGTCTGCACGAGGCACGCGTACTACGGCGCGGTCGGCGG
AAAGGTGCAGTTCTGCGCCGACCACGCCGAGGAGGGGATGGTCAACGTCG
TGAGCCAGAAGTGCAACAAGCCGGGCTGCACGAAACAGCCGAAGTACGGT
GTTGTGGGCACTAAGAAGCCGGAGTATTGCGCGCCCCACGCTCCGGGGGG
AATGGTAAATGTCCTTCGCGCGAAATGCGCTCACGACGGCTGTGCCAAGA
CCCCAATCTTTGGCGTCCTAGGCACGCGGAAGGCACTGTTCTGTGGCACC
CACGCCGATCCTGAAATGGTGGATGTTATAAGGAAGCCTTGCGCCCAGGA
AGGCTGCTTTGCGCGGGCGTCGTACGGTTACGAGGGTGTCAACAAGGGCG
AGCTCTGCGCCTACCACGCCGTAGAAGGAATGGTGGATGTTGTTACCAAG
AAGTGCTCGTTCGAAGGCTGCTACACGCGCCCTAGCTATGGCTTGGAGGA
CAGCAAGTCGCTGGAGCGCTGCTCCATTCACGCAGAGGAAGGCATGGTGA
ACCGAGTCAGCAAGCGCTGCACTCTCGAGGGTTGCAATACGCTTGCTTCG
TATGGCGTCGCCGGCACTCGGAAGCGGGAGTTCTGCGTCAGACACGCCAC
GTGGGGAATGGTGGACGTGGTGAACAAGAGATGTGGCAACAAGCACTGTG
AGAAATATCCAACCTTCGGTTACATTGGCATAAACAGGCGAGAGTTCTGC
GTCGACCACGCGGCGGCGGGAATGGTGAACATCGTCGGCAAGGGTTGCGC
GCGGCAGGACTGCCCAAATCGTGCAACCTGTGGTAGACACGGCAAGCCAT
TCCCGGACCTGTGCACCGTCCATGCC