mRNA_H-elongata_contig52221.12523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52221.12523.1
Unique NamemRNA_H-elongata_contig52221.12523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52221.12523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52221contigH-elongata_contig52221:105..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size882
Cds size852
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.25453-UTR-H-elongata_contig52221:104..1341622930854.25453-UTR-H-elongata_contig52221:104..134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52221 105..134 +
1691679598.8626773-UTR-H-elongata_contig52221:104..1341691679598.8626773-UTR-H-elongata_contig52221:104..134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52221 105..134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.268811-CDS-H-elongata_contig52221:134..2551622930854.268811-CDS-H-elongata_contig52221:134..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 135..255 +
1691679598.8709097-CDS-H-elongata_contig52221:134..2551691679598.8709097-CDS-H-elongata_contig52221:134..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 135..255 +
1622930854.2848911-CDS-H-elongata_contig52221:627..7421622930854.2848911-CDS-H-elongata_contig52221:627..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 628..742 +
1691679598.881092-CDS-H-elongata_contig52221:627..7421691679598.881092-CDS-H-elongata_contig52221:627..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 628..742 +
1622930854.3026729-CDS-H-elongata_contig52221:1069..12021622930854.3026729-CDS-H-elongata_contig52221:1069..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 1070..1202 +
1691679598.8912232-CDS-H-elongata_contig52221:1069..12021691679598.8912232-CDS-H-elongata_contig52221:1069..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 1070..1202 +
1622930854.3170216-CDS-H-elongata_contig52221:1702..18721622930854.3170216-CDS-H-elongata_contig52221:1702..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 1703..1872 +
1691679598.8991513-CDS-H-elongata_contig52221:1702..18721691679598.8991513-CDS-H-elongata_contig52221:1702..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 1703..1872 +
1622930854.3321629-CDS-H-elongata_contig52221:2367..25121622930854.3321629-CDS-H-elongata_contig52221:2367..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 2368..2512 +
1691679598.9087408-CDS-H-elongata_contig52221:2367..25121691679598.9087408-CDS-H-elongata_contig52221:2367..2512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 2368..2512 +
1622930854.356672-CDS-H-elongata_contig52221:3305..34731622930854.356672-CDS-H-elongata_contig52221:3305..3473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 3306..3473 +
1691679598.9193811-CDS-H-elongata_contig52221:3305..34731691679598.9193811-CDS-H-elongata_contig52221:3305..3473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52221 3306..3473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52221.12523.1prot_H-elongata_contig52221.12523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52221 135..3473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52221.12523.1

>prot_H-elongata_contig52221.12523.1 ID=prot_H-elongata_contig52221.12523.1|Name=mRNA_H-elongata_contig52221.12523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp
MMHGKGTFMWSKGDMYDGDWRAGKMHGHGVKKMGNGDVYEGAWKGGMADG
WGKKKFRCGDLHEGCYKEDKRCGFGIYMWVNGDRYEGEWRNGRMHGKGVK
VMANGDVYNGTWENDKAEGNGVKVFACGDRHEGDYHEDKRHGYGCYTWDS
GDRYEGYWAEGRMSGKGVKYMANGDIYDGEWHDDKAHGWGMKAFANGDRH
EGEYCLDLRQGSGMYHWANGDCYEGDWERGEQSGSGTYTYANQAVYDGVW
ENGRKHGSGYFSSGSQLLLELWCRGVRVKRCEVS
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mRNA from alignment at H-elongata_contig52221:105..3473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52221.12523.1 ID=mRNA_H-elongata_contig52221.12523.1|Name=mRNA_H-elongata_contig52221.12523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3369bp|location=Sequence derived from alignment at H-elongata_contig52221:105..3473+ (Himanthalia elongata Himel1 dioecious)
GATCGCTACAAAGGAGAGTGGAAAGATGGCATGATGCACGGGAAGGGAAC
TTTTATGTGGAGCAAGGGCGACATGTACGATGGCGACTGGAGGGCCGGCA
AGATGCACGGCCACGGCGTGAAAAAAATGGGAAACGGTGACGTCTACGAA
GGTGCGTGGCGGTGCCGGTGCCAGTCGCCCCGCCGGCACTAATGCGAGAG
GAACATCCTGCTATTCCTCTCTCGAGCCTTTCGGTGACCCAATCCATGCA
GCAGTCTTGTAAAATTACCGCAACCGTATCCTCTTGCGCGCGGTTGGGTA
GGGTTGGCGAGAGGTTTAAACGAAAACGCAAACGCGCGCACACGCTTTAG
GAGCGTCCCCCCACAGGTGTACTTTTTTATGGTGGTCCCTCGCTCTCGTG
AGAATGCACGCGTTCCTTCGCGCGCTTTTCCCCCCTCTTCTGTCTGTACG
CGGGATTATAGCCGCTTTGTGTTTGCCCCGATTCTTTTCCGCTGAGCTGT
GCTTCTTCGCGATGATCCCTCAGGGGCGTGGAAGGGCGGCATGGCTGACG
GTTGGGGAAAGAAAAAGTTTCGGTGTGGAGATCTTCACGAGGGCTGCTAC
AAGGAAGACAAGCGCTGCGGCTTCGGCATATACATGTGGTAAGCGAGTAC
TCGGTACCGTAAACGTCTAAGGGAGGGGCGAGGCGCGCGCTTTCTTTCAT
TTTTTTCTACCTTTTGAGGCGTCATAGCCTGTGGGTTAAGCAGGAGCAAA
GATCCGAAAATCCGGAACATACATACAAAAAAATATACACTTACGTGTAT
GAAGTATGTATGTATGATAATCACATATAGCAGAATAATTTTCCCCCCGG
TGCTGTCATAGTCCATAATGCATTGATTTTCATTTGTAAGCCTAATTTTT
GTGGCCGTCTCCCGTCGGGTGTTGGGATCGATTGTGGTGGGCGTTTGTGG
TAAAATAATAAAAAGGGTTAACGGCGACCGATACGAAGGAGAATGGCGCA
ACGGTCGTATGCACGGGAAGGGGGTGAAGGTGATGGCCAATGGAGACGTG
TACAACGGCACGTGGGAGAACGACAAGGCCGAGGGCAACGGAGTAAAGGT
GCGCAGCCGGTGAAGACCGAAAACGAACGACAAAAAATCAAACATGAAAG
GGGTGTCGCGAACGGGCAATAAACATATGATGAACAATCGCATATGAGGA
GTTTGTAGTGATAATGTCCACATTCGAACCTGGCGATAGTTGGTCCCTTG
GGCGACACCTCTCATGGTGCTAAGAATGCGTGGATGTTCCGAGGGTTGGG
ATTAGTTTATGTGTTTTTTAATGATAGCTTGTGCTGTCGCGTTCTTTGAT
GGTGTGTTGCGAGGCTTCGCGGGTACGCGGAAGCCACGCGCGCTGAGAAA
AAAAAATGTGGTTTTCGAGGAGTGCCTCCTTGTTTGTTTATTATTCCATT
TTCTCTGTCATAGTACACTAAAACATACAGACCCATCAAGGGTACTTGGG
GCCGCTCGAGCCAGTGGTCATTTGGAATTTGTTGTTTCCGGTGTTTTAAG
GCGGTACGTGAAACCCCATAAGTGTGGAAACCGTTACCGTGTCTGCAGGT
GTTTGCCTGCGGCGATCGTCACGAGGGTGACTACCACGAAGACAAGAGGC
ACGGTTACGGCTGCTACACGTGGGACAGCGGAGATCGGTACGAGGGCTAC
TGGGCCGAGGGTCGCATGTCGGGCAAGGGTGTCAAGTACATGGCCAACGG
CGATATCTACGATGGAGAGTGAGTGGCGGATGCGCTTTTAGCCTGGAAAT
AATTAAAATAATTTAGTTTAAAAAAGGTATTGCGCTGACGTCAGAGTAGC
AAGAAGCATTACGCCATCCTATGTGTTTAGCGTTTTTTTCCGGCTCTTGT
CTTTCGTTTTGATCGGGGTGGGCCGTGTTCCGTAGAGCTGAAAATGAAAC
GCAATCTCAGGCGCTTTTTGAGCGGGAGAGGGGTGAACAACATGGTAACC
CGCCGGTCCTGTTGCTTCAGGGAGCATCCGTGCCCTGGGCGATTCTACAG
TGTTCCCATTCCGCACCCCTCGTGTCGGACTGCAACCATTTTTTTTTGGC
GGCACTTACAGTATTTTCGTGTTTCGTGTCTCGTGTCTTTCTACCACTGT
TGATGTCTCGATACTATGAATAGTAGTATATTTTTGTTATTATGTCTTTG
TTGGTCATCCTCCGTGATGGAGTTCATCGTTCGTTGACATGTTCGCTAAC
CCCCCGACCCAAGGTGGCACGACGACAAGGCTCACGGGTGGGGCATGAAG
GCCTTCGCGAACGGTGATCGTCACGAGGGCGAGTACTGCCTCGATCTCAG
GCAGGGCTCTGGGATGTACCATTGGGCAAACGGGGACTGCTACGAGGGCG
ACTGGGAGGTGCGAGTGAAAACACGATTTTTGTGCAGGGGGAGGGGGCAG
GCGGCAAGAAAATGAGCGAGTCGTGCTATAAGCGGATTTTAATTGACGAG
AGGAAAAATATCGGTTTGATCTTCTCCCTCCCGCGTGTGTGAATCGCAGA
AACGAAGTGGTTGCCCTCCGCACGTTTGTTGTTAAATACGGTAGTGTTTT
TGGTCGCCTACCGTTCTCGTTCTCGCTCTCGCTCCTTAACCCCTACGGAA
CTCGGTCTGTTTTATACATACTAAATTCAATATAAAATTTGAAATCCAGT
TCCAAAAGGGTTAACCCCTAGGGAACTCGATCTGGTTTTTACATACTAAA
TGTATAATAAAACTTGAAATCCAATTCCGAAGGGGTTAAGAAGATTATGG
CGCGTTAAAGAAAAAAGGAAGCTATACAAAATATTACATATATATATATA
TATATAGAATTGGGAAAAACTAGATATTTTGGTTGAATTATATATTGGGG
GGGGGGGGGACGAGACACAGGTGGTGGCTATGTTGTATTCTGAGGATAAG
TAGTCGGAGAGTGGTGTGAAAACTTATGTAGATTGGATAGGAAGGACTGT
GTAATGCCGTCTTCCTTTGGCACATAAGGAAGGGATGGTTGGCCGTCGAC
AAACGATCGATTATGAAGGAACAATGATATTTCCGTCATTCCTCTCTCCT
GAAGGCGTGGGTCACTAGTTTAATACCACAGGCGTGTAAAAAAACTTTTC
TACCCCCCCCCCCACCCCACTCAACTGAACTCCCGATATGGCGTGTGGCA
GAGGGGAGAACAGTCCGGGTCGGGAACCTACACGTACGCGAATCAGGCGG
TGTACGATGGCGTCTGGGAGAACGGTCGCAAGCACGGAAGCGGGTACTTC
TCGTCCGGCAGCCAACTCTTGCTGGAGCTGTGGTGCCGAGGCGTGCGCGT
GAAGCGATGCGAGGTTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig52221:105..3473+

>mRNA_H-elongata_contig52221.12523.1 ID=mRNA_H-elongata_contig52221.12523.1|Name=mRNA_H-elongata_contig52221.12523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig52221:105..3473+ (Himanthalia elongata Himel1 dioecious)
ATGATGCACGGGAAGGGAACTTTTATGTGGAGCAAGGGCGACATGTACGA
TGGCGACTGGAGGGCCGGCAAGATGCACGGCCACGGCGTGAAAAAAATGG
GAAACGGTGACGTCTACGAAGATGATGCACGGGAAGGGAACTTTTATGTG
GAGCAAGGGCGACATGTACGATGGCGACTGGAGGGCCGGCAAGATGCACG
GCCACGGCGTGAAAAAAATGGGAAACGGTGACGTCTACGAAGGGGCGTGG
AAGGGCGGCATGGCTGACGGTTGGGGAAAGAAAAAGTTTCGGTGTGGAGA
TCTTCACGAGGGCTGCTACAAGGAAGACAAGCGCTGCGGCTTCGGCATAT
ACATGTGGGGCGTGGAAGGGCGGCATGGCTGACGGTTGGGGAAAGAAAAA
GTTTCGGTGTGGAGATCTTCACGAGGGCTGCTACAAGGAAGACAAGCGCT
GCGGCTTCGGCATATACATGTGGGTTAACGGCGACCGATACGAAGGAGAA
TGGCGCAACGGTCGTATGCACGGGAAGGGGGTGAAGGTGATGGCCAATGG
AGACGTGTACAACGGCACGTGGGAGAACGACAAGGCCGAGGGCAACGGAG
TAAAGGGTTAACGGCGACCGATACGAAGGAGAATGGCGCAACGGTCGTAT
GCACGGGAAGGGGGTGAAGGTGATGGCCAATGGAGACGTGTACAACGGCA
CGTGGGAGAACGACAAGGCCGAGGGCAACGGAGTAAAGGTGTTTGCCTGC
GGCGATCGTCACGAGGGTGACTACCACGAAGACAAGAGGCACGGTTACGG
CTGCTACACGTGGGACAGCGGAGATCGGTACGAGGGCTACTGGGCCGAGG
GTCGCATGTCGGGCAAGGGTGTCAAGTACATGGCCAACGGCGATATCTAC
GATGGAGAGTGTTTGCCTGCGGCGATCGTCACGAGGGTGACTACCACGAA
GACAAGAGGCACGGTTACGGCTGCTACACGTGGGACAGCGGAGATCGGTA
CGAGGGCTACTGGGCCGAGGGTCGCATGTCGGGCAAGGGTGTCAAGTACA
TGGCCAACGGCGATATCTACGATGGAGAGTGGCACGACGACAAGGCTCAC
GGGTGGGGCATGAAGGCCTTCGCGAACGGTGATCGTCACGAGGGCGAGTA
CTGCCTCGATCTCAGGCAGGGCTCTGGGATGTACCATTGGGCAAACGGGG
ACTGCTACGAGGGCGACTGGGAGGTGGCACGACGACAAGGCTCACGGGTG
GGGCATGAAGGCCTTCGCGAACGGTGATCGTCACGAGGGCGAGTACTGCC
TCGATCTCAGGCAGGGCTCTGGGATGTACCATTGGGCAAACGGGGACTGC
TACGAGGGCGACTGGGAGAGGGGAGAACAGTCCGGGTCGGGAACCTACAC
GTACGCGAATCAGGCGGTGTACGATGGCGTCTGGGAGAACGGTCGCAAGC
ACGGAAGCGGGTACTTCTCGTCCGGCAGCCAACTCTTGCTGGAGCTGTGG
TGCCGAGGCGTGCGCGTGAAGCGATGCGAGGTTAGCAGGGGAGAACAGTC
CGGGTCGGGAACCTACACGTACGCGAATCAGGCGGTGTACGATGGCGTCT
GGGAGAACGGTCGCAAGCACGGAAGCGGGTACTTCTCGTCCGGCAGCCAA
CTCTTGCTGGAGCTGTGGTGCCGAGGCGTGCGCGTGAAGCGATGCGAGGT
TAGC
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