mRNA_H-elongata_contig52206.12520.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52206.12520.1
Unique NamemRNA_H-elongata_contig52206.12520.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.240e-74
Identity = 105/152 (69.08%), Postives = 126/152 (82.89%), Query Frame = 1
Query:   10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVC 465
            CPY I +  EA +R ++ S+PGN+VK+EHL FCRTGNHFS+ F+NLALGYCCKSK+VWLP KDD+LAPGVFN+GTPGPRWFDFS+APDV GF+S +C A ITWAGQRAF M QL++  H  + P L+EC+  APRLL CEAAYYFP DVD+C
Sbjct:   94 CPYVIDTAEEAISRIKDKSLPGNVVKVEHLTFCRTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAPDVDGFDSSACSADITWAGQRAFHMHQLDSPEHEFHTPGLKECIARAPRLLACEAAYYFPKDVDLC 245          
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.480e-69
Identity = 112/217 (51.61%), Postives = 140/217 (64.52%), Query Frame = 1
Query:   10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVCLDKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSGDIFENDVLWYYGQVYGDMYI 660
            C YAI + + AR +  +++I GN+VK+ HL+F RTGN F  V++NLALGYCCK+K VWLP KDD+LAPG+FNEGTPGPRWFDFS+APDV G +   C   I W  + A +M  L+    + Y P +R+C+  APRLLGCEAAYYFP D+ VC  K+    A G R   GG                AGNLVLHVRSGDIF + V+ Y GQ     Y+
Sbjct:   59 CTYAIPNAKVARKQRHDSTIEGNVVKVTHLQFGRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAPDVDGVDLGRCPIDIIWENRGAMQMAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFPQDIAVCPRKKKPFLALGDRNPPGG----------------AGNLVLHVRSGDIFFDRVVPYKGQPPLQFYL 259          
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 4.160e-66
Identity = 113/228 (49.56%), Postives = 141/228 (61.84%), Query Frame = 1
Query:    1 NKKCPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVCL-------DKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSGDIFENDVLWYYGQVYGDMYIR 663
            N  CPY + +  E R R  + +IPGN++ I   RF R GN F  +  NL LGYCCKSKLV LP+KDD LAPG+F EGTPGPRW+DF+ APDV+GF++ SC A ITW G+ AF +  L+   H +Y+P L  CV+  PRL GCEAAY+FP  VDVCL       D   ++   G    SG   +K +   EEEE   A  LV+HVRSGDIF +     YGQ     Y+R
Sbjct:  121 NPDCPYILRTPGE-RLRMRDPAIPGNVLTINDFRFGRLGNRFWALGVNLKLGYCCKSKLVSLPAKDDTLAPGIFGEGTPGPRWYDFTNAPDVEGFDASSCPADITWGGREAFHLLGLDNPSHPYYSPNLSTCVETVPRLTGCEAAYFFPMGVDVCLSDRTATGDVVHEQRGNGASGRSGPGVKKNLVGSEEEEGRPANTLVIHVRSGDIFVDPAAPGYGQPPLQYYVR 347          
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.960e-61
Identity = 109/231 (47.19%), Postives = 139/231 (60.17%), Query Frame = 1
Query:   10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTD--VDVC-----------------LDKEPKEAAEGPRTLSGGKNEKR------------MFDYEEEEEESAGNLVLHVRSGDIF 609
            CPYAI SE EAR R+ N S PGN+V +    +CR GN F+++ ++L+LGYCCKS+L+ LP KD+ LAPG FNEG PGPR FDFS+APDV+GF+  SC   ITW G  AF +  L   GH +Y P L EC+K  PR+ GCEAAY+FP D  VD+C                 + ++P++ A G R   G + + R                    E SAGNLV+HVRSGDIF
Sbjct:  147 CPYAIPSEEEARERSGNTSAPGNVVVVTDFNYCRLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAPDVEGFDYSSCPPEITWGGTNAFHLQGLRDEGHPYYTPELFECIKELPRIAGCEAAYFFPKDMAVDMCPLDETAERDHNNSNVRDVSEKPRDDAPGVRLDWGERGQGREATXXXXXXXXXXXXXXXXXEGSAGNLVVHVRSGDIF 377          
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.140e-58
Identity = 111/246 (45.12%), Postives = 146/246 (59.35%), Query Frame = 1
Query:   10 CPYAIHSEREARARAE------NASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVCL----------DKEPKEAAEGPRTLSGGKNEKRMFDYEE-----EEEE-------------SAGNLVLHVRSGDIFENDVLWYYGQVY 645
            CPYAI +E E   R++      N S PGN+V +    +CR GN F ++ ++L+LGYCCKS+LV LP KDD LAPG FN+GTPGPR FDFS+APDV+GF+S SC   I W G +AF ++ L   GH +Y P L  C+K  P ++GCEAAY+FPTD+ V +          +K  ++ +E P+  + G       D+EE     E  E             SAGNLV+HVRSGDIF +     YGQ Y
Sbjct:  146 CPYAILAEEEGHERSDRGGDGGNTSAPGNVVVVTDFNYCRLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAPDVEGFDSSSCPPEIKWGGTQAFHLEGLRDEGHPYYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGGNKNVRDISEKPKDDAPGI----QLDWEESGHGREATEQXXXXXXXXXXXGSAGNLVMHVRSGDIFVSPAHPGYGQYY 387          
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.670e-14
Identity = 67/211 (31.75%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEG--TPGPRWFDFS-TAPDVKGFESVS-----CMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDV---CLDKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSGDIF 609
            CP A+ S  +A A  +  +   N + +      R+GNHF  +   LA+G+CC+S+L+ LP  D  + PG    G    G RWFDFS   P   GFE +      C   +      AF        G+ H +  L  C+     L GCE AY     VD+   C  +EP            GK +             AG+LV+H+RSGDIF
Sbjct:   89 CPQAL-SRSQAEAALDGGNSTSNTITLLSFGSGRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAM-PGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAF--------GYEHIHSRLLRCMNRV-YLRGCEKAYLGKM-VDLEGFCPKQEP------------GKRK------------GAGSLVVHIRSGDIF 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K2F3_9PHAE1.240e-7469.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G610_ECTSI1.480e-6951.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2M2_ECTSI4.160e-6649.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K7B3_9PHAE3.960e-6147.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L4_ECTSI1.140e-5845.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRV9_ECTSI4.670e-1431.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52206contigH-elongata_contig52206:2528..3733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52206.12520.1prot_H-elongata_contig52206.12520.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52206 2528..3733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.0053923-CDS-H-elongata_contig52206:2527..27041622930854.0053923-CDS-H-elongata_contig52206:2527..2704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 2528..2704 +
1691679598.7864473-CDS-H-elongata_contig52206:2527..27041691679598.7864473-CDS-H-elongata_contig52206:2527..2704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 2528..2704 +
1622930854.0188394-CDS-H-elongata_contig52206:2899..30711622930854.0188394-CDS-H-elongata_contig52206:2899..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 2900..3071 +
1691679598.7986166-CDS-H-elongata_contig52206:2899..30711691679598.7986166-CDS-H-elongata_contig52206:2899..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 2900..3071 +
1622930854.035333-CDS-H-elongata_contig52206:3323..35201622930854.035333-CDS-H-elongata_contig52206:3323..3520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 3324..3520 +
1691679598.8068557-CDS-H-elongata_contig52206:3323..35201691679598.8068557-CDS-H-elongata_contig52206:3323..3520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 3324..3520 +
1622930854.0503387-CDS-H-elongata_contig52206:3592..37331622930854.0503387-CDS-H-elongata_contig52206:3592..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 3593..3733 +
1691679598.8148344-CDS-H-elongata_contig52206:3592..37331691679598.8148344-CDS-H-elongata_contig52206:3592..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52206 3593..3733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52206.12520.1

>prot_H-elongata_contig52206.12520.1 ID=prot_H-elongata_contig52206.12520.1|Name=mRNA_H-elongata_contig52206.12520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
NKKCPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLA
LGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSC
MAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPT
DVDVCLDKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSG
DIFENDVLWYYGQVYGDMYIRRRRGTFC*
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mRNA from alignment at H-elongata_contig52206:2528..3733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52206.12520.1 ID=mRNA_H-elongata_contig52206.12520.1|Name=mRNA_H-elongata_contig52206.12520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-elongata_contig52206:2528..3733+ (Himanthalia elongata Himel1 dioecious)
AACAAAAAGTGTCCATATGCCATCCACTCTGAAAGGGAAGCCCGCGCCAG GGCCGAGAACGCCTCGATACCCGGGAACATCGTCAAGATCGAGCACCTGA GGTTCTGTCGAACGGGAAACCACTTCAGTACCGTGTTCCAAAACCTTGCC CTGGGGTATTGCTGCAAGTCGAAGCTGGTGAGTGCCGAGGGTGGAAGTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATAT ATATATATATATATATGAGGTATATTGCCCGAAGGGACGAAAGCGCTCCC AGGTGCGTTGGCATTGGTTAAAGCTAGTCGATCTCTTTGGGGTACTTGCC TTGCACTCTTCGTGTCCCACAGGTGTGGCTGCCCTCGAAGGACGACATCC TCGCTCCGGGGGTGTTTAACGAAGGGACCCCGGGCCCGCGGTGGTTCGAT TTCTCGACCGCACCCGACGTGAAAGGTTTCGAGTCCGTCTCGTGCATGGC GCACATTACCTGGGCCGGTCAGCGAGCATTCCGCATGGATCAATGTGAGA GTTTGTGCGAAGCTGCTATGCGGGGGATAAAGTGAGGAAGAGAGAGAGAC TTGCGAACCACTGTTGTTGACTAAAGAGCGTCACACGACACTTTCCACGA ACCTTTTCTTTCCGCCTCTCCCATATCTCGTTTTGCCGGTACTTCTTCCT TCTTCTCACACCCCCCTCCTCTTTTTCTCCCTTCATCGTCGTACCCCTGC CTCCCAATGTCCTGGAAAAACAAAAATATTTGGAAACCGTACAAAGTGAA CACAGCGGGTCACTCGCACTACAACCCGATTCTCCGGGAGTGCGTGAAGG CGGCGCCGCGGTTGCTTGGCTGCGAAGCTGCTTACTACTTCCCGACGGAC GTTGACGTATGCCTCGACAAGGAGCCTAAGGAGGCAGCAGAAGGGCCCAG AACGCTGAGCGGGGGCAAAAATGAAAAAAGGATGTTTGATTATGTCCACC TGGATAACGTAGAGGACGAAAGAGAAGAAGATAGAGAGGCCGGCGATGAC GACGTCGACGAGGAGGAGGAGGAGGAGGAGGAAAGCGCGGGGAATTTGGT GTTGCATGTGCGGTCGGGGGACATCTTTGAGAACGATGTATTGTGGTACT ACGGACAGGTATACGGGGACATGTATATACGGCGTCGGCGAGGCACGTTT TGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52206:2528..3733+

>mRNA_H-elongata_contig52206.12520.1 ID=mRNA_H-elongata_contig52206.12520.1|Name=mRNA_H-elongata_contig52206.12520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig52206:2528..3733+ (Himanthalia elongata Himel1 dioecious)
AACAAAAAGTGTCCATATGCCATCCACTCTGAAAGGGAAGCCCGCGCCAG
GGCCGAGAACGCCTCGATACCCGGGAACATCGTCAAGATCGAGCACCTGA
GGTTCTGTCGAACGGGAAACCACTTCAGTACCGTGTTCCAAAACCTTGCC
CTGGGGTATTGCTGCAAGTCGAAGCTGAACAAAAAGTGTCCATATGCCAT
CCACTCTGAAAGGGAAGCCCGCGCCAGGGCCGAGAACGCCTCGATACCCG
GGAACATCGTCAAGATCGAGCACCTGAGGTTCTGTCGAACGGGAAACCAC
TTCAGTACCGTGTTCCAAAACCTTGCCCTGGGGTATTGCTGCAAGTCGAA
GCTGGTGTGGCTGCCCTCGAAGGACGACATCCTCGCTCCGGGGGTGTTTA
ACGAAGGGACCCCGGGCCCGCGGTGGTTCGATTTCTCGACCGCACCCGAC
GTGAAAGGTTTCGAGTCCGTCTCGTGCATGGCGCACATTACCTGGGCCGG
TCAGCGAGCATTCCGCATGGATCAATGTGTGGCTGCCCTCGAAGGACGAC
ATCCTCGCTCCGGGGGTGTTTAACGAAGGGACCCCGGGCCCGCGGTGGTT
CGATTTCTCGACCGCACCCGACGTGAAAGGTTTCGAGTCCGTCTCGTGCA
TGGCGCACATTACCTGGGCCGGTCAGCGAGCATTCCGCATGGATCAATTG
AACACAGCGGGTCACTCGCACTACAACCCGATTCTCCGGGAGTGCGTGAA
GGCGGCGCCGCGGTTGCTTGGCTGCGAAGCTGCTTACTACTTCCCGACGG
ACGTTGACGTATGCCTCGACAAGGAGCCTAAGGAGGCAGCAGAAGGGCCC
AGAACGCTGAGCGGGGGCAAAAATGAAAAAAGGATGTTTGATTATTGAAC
ACAGCGGGTCACTCGCACTACAACCCGATTCTCCGGGAGTGCGTGAAGGC
GGCGCCGCGGTTGCTTGGCTGCGAAGCTGCTTACTACTTCCCGACGGACG
TTGACGTATGCCTCGACAAGGAGCCTAAGGAGGCAGCAGAAGGGCCCAGA
ACGCTGAGCGGGGGCAAAAATGAAAAAAGGATGTTTGATTATGAGGAGGA
GGAGGAGGAAAGCGCGGGGAATTTGGTGTTGCATGTGCGGTCGGGGGACA
TCTTTGAGAACGATGTATTGTGGTACTACGGACAGGTATACGGGGACATG
TATATACGGCGTCGGCGAGGCACGTTTTGCTAGGAGGAGGAGGAGGAGGA
AAGCGCGGGGAATTTGGTGTTGCATGTGCGGTCGGGGGACATCTTTGAGA
ACGATGTATTGTGGTACTACGGACAGGTATACGGGGACATGTATATACGG
CGTCGGCGAGGCACGTTTTGCTAG
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