mRNA_H-elongata_contig52198.12515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52198.12515.1
Unique NamemRNA_H-elongata_contig52198.12515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52198.12515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52198contigH-elongata_contig52198:82..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52198.12515.1prot_H-elongata_contig52198.12515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52198 83..3139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.3445318-UTR-H-elongata_contig52198:81..821622930853.3445318-UTR-H-elongata_contig52198:81..82Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52198 82..82 +
1691679598.4801064-UTR-H-elongata_contig52198:81..821691679598.4801064-UTR-H-elongata_contig52198:81..82Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52198 82..82 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.3629189-CDS-H-elongata_contig52198:82..1761622930853.3629189-CDS-H-elongata_contig52198:82..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52198 83..176 +
1691679598.4893742-CDS-H-elongata_contig52198:82..1761691679598.4893742-CDS-H-elongata_contig52198:82..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52198 83..176 +
1622930853.383047-CDS-H-elongata_contig52198:3068..31391622930853.383047-CDS-H-elongata_contig52198:3068..3139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52198 3069..3139 +
1691679598.4995515-CDS-H-elongata_contig52198:3068..31391691679598.4995515-CDS-H-elongata_contig52198:3068..3139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52198 3069..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52198.12515.1

>prot_H-elongata_contig52198.12515.1 ID=prot_H-elongata_contig52198.12515.1|Name=mRNA_H-elongata_contig52198.12515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MEEGRPCRLPPEVRASGQEHQEAPWRCLDGGEERPAHPRHERRVQVSFGV
CRGEG
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mRNA from alignment at H-elongata_contig52198:82..3139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52198.12515.1 ID=mRNA_H-elongata_contig52198.12515.1|Name=mRNA_H-elongata_contig52198.12515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3058bp|location=Sequence derived from alignment at H-elongata_contig52198:82..3139+ (Himanthalia elongata Himel1 dioecious)
AATGGAGGAAGGACGGCCGTGCAGGCTTCCGCCTGAGGTCCGTGCTTCTG
GCCAAGAACACCAAGAAGCCCCTTGGCGGTGCCTTGACGGCGGTGGTGGC
AGACTGGGGTGCACTGGTGACGCGTGGGAAGGAGCACGTGGAAGCGATCC
GGGAACGAGCTGAGAAAATCCAGAGGAAATCAGCAGCAGTAGCAGAAGCA
GGCGAAGCGCCGCTTCCGCGAAAGCGCGCCACCGCCGACACAGAAGTCGC
TGCAACGGACCCTTTGGAGGCGGAGCAGCACAGCGGGAGAAGGAGTCCTC
CACAGCAGCGGAGTTCTCCACAGCAGCCAAAGCCTAAGGCCGCACGGCGA
CAAACGGTGAGTCCATGCTCTTGTGTGATGGTTGAGGCACATCGGCAACT
TTCCCGCAATAATTGACCTATTCTCCCCTGCTGTACTAAATTTGGTATAC
TCTCCTCCTCCCTGCAGCTGCTGCCTGCTGTTATTTTTTTCCCGAAAACG
AGAACGTATACTAATTTCAACACAACCTCCTCGCCCCCTCTTCCCCTTCG
GGCACACCCACTGCTGTACTACGTTTAGGCGAAAGAAAAACGTCATGCTC
ACGTCATGGAGACTGCAAGGGGGGATCCTGAGTTGAAGGAGAAGCTAAGG
GAAATGCTGGGGAAGGATGACCTGGGAGCGGCAGCCGCGAAAGTAGCAGC
AGCGAACGCAGATATCGTCGGCGGAGCAGCTGCTGCGTTGGAGGCGATGA
AGCCGCACTGCAGCACCAAGATCGGCCGCATGGTGTACAACAGTGCGCTG
GCTACAGTCGCTGGTGTGGGGGGACACACATGTGATCCTGCTCACCCGTG
CAGCGCCGCTGACCGCTGCCCTCCCGCTGAGTCACGGGGTTCTACCTCCT
CTGTCGCCACACGAGCAGAGCTGCTTGGGCTGAGGCCCACGACCTACCGT
GAAGCCCAAGATCGGATGAAGAACGCCAACTTTTCCGTCTCACCGCAGCA
AGCTTTGAAGGAGGGGCGCTACTTGTGGGCTGACCGTAAGACCAGGAGCG
ACGTGACAGACTCACGTGTGATGGACCTGGCGAGGCGGTACTGGCATTCG
GACGACGTCTCCCGTGCGTCGGGAGATTCGGGTGAGCTGATGTTGTTTTT
GGTGTTGGTGATGATAGCACTACTGCTGTCGTACTTTGTTGCTGCCATCG
CTGCTTCTGTAGTTGCTGTGATGTGCTCTGTTGGTGCGTTCGCTGCTGTA
GTTGCTGTTGAGTTCTCTGTTGCGGCCTTCGCTAGTGCTATTGATACTAG
TGTTCATGTCGCCGTGCTCTGCTGCTGCTGTTGATGCTGCTGTAGCGTTC
ATAATTTTGCCGCACTGCTGCTGTAGCCCCGGGTAATTTACCGCACACTT
TTTCTGCCTTCGGCACCGCAGGGCAAAAGGCAATGTGGAGACCATCCAAG
AAAGCTGGCGAGGTGTATCATCCACGCAGAGAGCTCATGGTTCCGGGGGA
CAAGGTGCACATCATGTTTCTGGTATGGCGGCCGTATCTGGCACTCAAGG
CAGAGCTGCTGCTGGAGGATGACTCTTTCACAGATCCAGGCCGGTCGACC
TTCTTGTCTACACGCTGTGGGTGCTTAGGTGTGTGGCCACTAAAAGATGC
CGAATATTGGGCTGTGTACGGAAAATACATATTGTTTTCAACACCGGCAC
CTGTAGGACAGCGCGATGGAGATCTGACATGTCTGTTTTTTTCCCCTGCT
GCCATGTCGATATTTCTTATCTTACGCCTTGCAGCTGAGCCAAGGGCGTC
GCAATGTGCTTGCGAGATCCACACGCAGCAGTCGCTTTATCTCGAAGCCC
TCGGGATGTTGATGGGATCAATGCATGACAACTGCGACTGCACGTGCAGG
TGGTGCGAAGGCGGGGAAGGTTGTAAGAAGTGGTTGGGAATGTGTAGATC
TTTGCACAATTTCTCTGACGAATTCATGTGCGAGAAGGTGGACATGTTGG
GGGAGGATAAGGAGGATGAGTTTGAGCACTGGGGGAGGAGGCCGGAGTGC
GTTGCGGGCAAGTGTTCAAATTGCGGGTTTGGGAACCCAAATGGCATTCC
TACCGACTGTTTGGCTCTCGGTCGCGCGGCACATAGAATGGTGGGATGGA
TCCGTTTCCAGGATCAAAAGATGGAGGACGGCAAGACGCATAAGAAGCAG
CAGCTACCGCAGGTCGGACCGTTGCGTGACCTTTGGGACGAGTTCATGGA
GCACTCCAAGAAGGTGAGAAGGTGAACTTATCAACACGACGATTTTTTTC
TGTAATTTTCGTATCACTTGGTCAAAGTGTAATTTTCGTTTGATGTTTCA
ATCAACAAGTAATTTGGGAGCAGGCACCTGAACTGTTATCCGCTCCCCCC
CTCTTCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GCCCCGCAGTACATCGAGCACCATGAACTGGCGAAGTGGCAGCGCAAGGC
CCACAACATGTGCTTGGGGACGTTCCGCAAGGGCGAGTTGCTCATCGAGA
CCGACTTCATCGAGAAATACCGTCACGAAGCCCGCTATGTCTTGACGTGC
TCTACCGCGCCCACAACGACCATCATGGTGTCCCTCGTGCACCATAGCCC
TGTCGGTGGCAAGCACACGACGGATGCATGGGTGTTCGTGTCGAGCGACC
CCAACCACGACTTCGACTTCCACATCTACGCCCTCGACATCATCCTCCAG
CACTACATTTCGGGCGAGGGGCGTGCCGCTACTGCTGGAACACGGGTCCC
GACGGTGCACATGTTCACCGATGGGTGCGCCAAGCAGTACAAGGGCAAGC
GCAACTTCATGGCCGTAGCGCAAAGCTTGCGCAGGCTTGGCGTCATCCTG
CTGCACAACTTTGCTGTCACCTCACACTTCAAGGGCGCACACGATGGCAT
CGGGGGTTTGCTCAAGACCCTCATGAAGGACGCGGAGAAGAGAGGCCAGC
GCATCCCCGACACGAACGCCGTGTACAAGTTTCTTTCGGAGTATGCCGAG
GGGAAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig52198:82..3139+

>mRNA_H-elongata_contig52198.12515.1 ID=mRNA_H-elongata_contig52198.12515.1|Name=mRNA_H-elongata_contig52198.12515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig52198:82..3139+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGAAGGACGGCCGTGCAGGCTTCCGCCTGAGGTCCGTGCTTCTGG
CCAAGAACACCAAGAAGCCCCTTGGCGGTGCCTTGACGGCGGTGATGGAG
GAAGGACGGCCGTGCAGGCTTCCGCCTGAGGTCCGTGCTTCTGGCCAAGA
ACACCAAGAAGCCCCTTGGCGGTGCCTTGACGGCGGTGAAGAGAGGCCAG
CGCATCCCCGACACGAACGCCGTGTACAAGTTTCTTTCGGAGTATGCCGA
GGGGAAGGGAAGAGAGGCCAGCGCATCCCCGACACGAACGCCGTGTACAA
GTTTCTTTCGGAGTATGCCGAGGGGAAGGG
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