mRNA_H-elongata_contig52179.12511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52179.12511.1
Unique NamemRNA_H-elongata_contig52179.12511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A6H5KI57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI57_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.680e-25
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 QRPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            +RPETL TTLPNGLRVASQETYGALCTFG++VNAGSR+ETDLNTGTCHLLE MAF
Sbjct:  131 KRPETLTTTLPNGLRVASQETYGALCTFGIVVNAGSRLETDLNTGTCHLLELMAF 185
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A835Z8C4_9STRA (Mitochondrial processing peptidase alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.430e-17
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    4 RPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            RPET+++TL +GLRVASQETYG LCTFGV+VNAGSR ET+ N G  HLLE MAF
Sbjct:   92 RPETIVSTLSSGLRVASQETYGQLCTFGVLVNAGSRHETEANQGVSHLLELMAF 145
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A7S3PID5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PID5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.250e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 RPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            +PET +TTL NGLRVAS+ETYG + T G+ ++AGSR E D N+G  HLLE MAF
Sbjct:   53 KPETKITTLANGLRVASEETYGQVSTIGMFIDAGSRYENDSNSGVSHLLEHMAF 106
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A2R5GCH9_9STRA (Mitochondrial-processing peptidase subunit alpha n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCH9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.480e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 RPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            +PET +TTLPNGLRVAS+ET+G +   G+ V+AGSR ETD N G  HL+E MAF
Sbjct:   46 KPETKVTTLPNGLRVASEETFGQVTALGMFVDAGSRYETDANNGVSHLMEHMAF 99
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A7S3UY37_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UY37_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.520e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 RPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            +PET +TTL NGLRVAS+ETYG + T G+ ++AGSR E D N+G  HLLE MAF
Sbjct:   53 KPETKITTLANGLRVASEETYGQVSTIGMFIDAGSRYENDSNSGVSHLLEHMAF 106
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A7S2D9A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D9A5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.750e-14
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   19 LTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            L+ LPNGLR+ASQETYG LC FG+ ++AGSR+ET   TGT  L+E MAF
Sbjct:    4 LSQLPNGLRIASQETYGQLCNFGLFIDAGSRIETKNTTGTTQLMELMAF 52
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: W7TP27_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP27_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.300e-13
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QRPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRME-TDLNTGTCHLLEQMAF 165
            Q P T +TTL NGLRVA+QETYGALCTFGV+V+AGSR E      G CHL E  AF
Sbjct:  100 QAPVTKITTLDNGLRVATQETYGALCTFGVVVDAGSRDELAGREDGVCHLFEATAF 155
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: A0A7S2SMW1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SMW1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.250e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QRPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            ++P   +TTLPNGLRVASQETYG +   GV V++GSR E+D N+G  H+LE MAF
Sbjct:   47 EKPTMQMTTLPNGLRVASQETYGQVSALGVFVDSGSRYESDHNSGISHMLEHMAF 101
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BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: K7H7B0_CAEJA (Uncharacterized protein n=2 Tax=Caenorhabditis japonica TaxID=281687 RepID=K7H7B0_CAEJA)

HSP 1 Score: 68.6 bits (166), Expect = 1.740e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 PETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            PET++TTLPNG RVA++ T G+  T GV ++AGSR E + N GT H LE MAF
Sbjct:   28 PETVVTTLPNGFRVATENTGGSTATIGVFIDAGSRYENEKNNGTAHFLEHMAF 80
[Close]
BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Match: MPPB_CAEEL (Mitochondrial-processing peptidase subunit beta n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=MPPB_CAEEL)

HSP 1 Score: 68.9 bits (167), Expect = 2.760e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 PETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLLEQMAF 165
            PET++TTLPNG RVA++ T G+  T GV ++AGSR E + N GT H LE MAF
Sbjct:   28 PETIVTTLPNGFRVATENTGGSTATIGVFIDAGSRYENEKNNGTAHFLEHMAF 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52179.12511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI57_9PHAE2.680e-2589.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8C4_9STRA1.430e-1774.07Mitochondrial processing peptidase alpha subunit n... [more]
A0A7S3PID5_9STRA3.250e-1462.96Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5GCH9_9STRA3.480e-1462.96Mitochondrial-processing peptidase subunit alpha n... [more]
A0A7S3UY37_9STRA6.520e-1462.96Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2D9A5_9STRA9.750e-1465.31Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
W7TP27_9STRA2.300e-1366.07Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S2SMW1_9STRA4.250e-1360.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
K7H7B0_CAEJA1.740e-1258.49Uncharacterized protein n=2 Tax=Caenorhabditis jap... [more]
MPPB_CAEEL2.760e-1258.49Mitochondrial-processing peptidase subunit beta n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52179contigH-elongata_contig52179:3366..3953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue3.5e-21
Seed eggNOG ortholog2880.D7FU77
KEGG koko:K01412
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0612@1,KOG2067@2759
EC3.4.24.64
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.0056689-CDS-H-elongata_contig52179:3365..34721622930853.0056689-CDS-H-elongata_contig52179:3365..3472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52179 3366..3472 +
1691679598.2936597-CDS-H-elongata_contig52179:3365..34721691679598.2936597-CDS-H-elongata_contig52179:3365..3472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52179 3366..3472 +
1622930853.0189898-CDS-H-elongata_contig52179:3895..39531622930853.0189898-CDS-H-elongata_contig52179:3895..3953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52179 3896..3953 +
1691679598.3039112-CDS-H-elongata_contig52179:3895..39531691679598.3039112-CDS-H-elongata_contig52179:3895..3953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52179 3896..3953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52179.12511.1prot_H-elongata_contig52179.12511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52179 3366..3953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52179.12511.1

>prot_H-elongata_contig52179.12511.1 ID=prot_H-elongata_contig52179.12511.1|Name=mRNA_H-elongata_contig52179.12511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
QRPETLLTTLPNGLRVASQETYGALCTFGVIVNAGSRMETDLNTGTCHLL
EQMAF
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mRNA from alignment at H-elongata_contig52179:3366..3953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52179.12511.1 ID=mRNA_H-elongata_contig52179.12511.1|Name=mRNA_H-elongata_contig52179.12511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig52179:3366..3953+ (Himanthalia elongata Himel1 dioecious)
CAGCGACCAGAAACGCTGCTGACCACGCTGCCCAATGGCCTTAGGGTAGC
CTCCCAGGAGACGTACGGAGCGCTGTGCACGTTCGGGGTGATTGTCAATG
CTGGCAGGTGCGAGGCGTGGCCGAGCGAGATGCGGCCACCCCTCCGCCGG
AATCCGTTTGATCACGACCTTCTTTGCTTCGCTTCGCTTTGCTCCGTCGC
GGTAATGCTATGCTATTTAGAACAGGGTTTTGTGAGGGGGTACTGGTGCG
GCTCTTGTGGTGTTAGGGGGTTATGATGCTGCATTGGTAAAAGTTGCGGG
AAGCTTGAGTTTGAGGAGAACCCCGTGCCATATCTTTCTCCTCCCTGTTG
ATGTCTGCTGAGGGTCACCACCGCTAGCTAGCCCCACGGCGGATATTCGA
TGGCTTATCGTCGAAGCCTCTTTGAGCGGATGCGACAGCTTGACTCACCG
CAGGCGCTGGGTTCCGTTGTCCCTCTCTACCCCGTTTGGCGTTCAAACGC
TTTCGCAACATATTTGCTTGTTCTCCTCAGTCGCATGGAGACGGATCTGA
ACACGGGCACGTGTCATCTCCTGGAGCAGATGGCCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig52179:3366..3953+

>mRNA_H-elongata_contig52179.12511.1 ID=mRNA_H-elongata_contig52179.12511.1|Name=mRNA_H-elongata_contig52179.12511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig52179:3366..3953+ (Himanthalia elongata Himel1 dioecious)
CAGCGACCAGAAACGCTGCTGACCACGCTGCCCAATGGCCTTAGGGTAGC
CTCCCAGGAGACGTACGGAGCGCTGTGCACGTTCGGGGTGATTGTCAATG
CTGGCAGCAGCGACCAGAAACGCTGCTGACCACGCTGCCCAATGGCCTTA
GGGTAGCCTCCCAGGAGACGTACGGAGCGCTGTGCACGTTCGGGGTGATT
GTCAATGCTGGCAGTCGCATGGAGACGGATCTGAACACGGGCACGTGTCA
TCTCCTGGAGCAGATGGCCTTCTCGCATGGAGACGGATCTGAACACGGGC
ACGTGTCATCTCCTGGAGCAGATGGCCTTC
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