mRNA_H-elongata_contig52177.12510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig52177.12510.1
Unique Name	mRNA_H-elongata_contig52177.12510.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: D7FX65_ECTSI (XPA_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX65_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.470e-16
Identity = 68/248 (27.42%), Postives = 82/248 (33.06%), Query Frame = 1

Query:   13 QLSREGYQCITKKEAKETYLLPEGTIAVLRFIERDNPHHSSWNKVSLRSSTPIIRSAENSSTSI*FQH*CFIPA*SAAFIVKASG*DASRRVPRVVPSQIILTVH*TVHCRDYARHSSCRRQASLVGDPRHQQLRARGLLYYTVVRKRALVSFLM*SGEKDTDLTWLRTALVG*RLCKKKNIHTHEILISVFPLSLEQMKLYLRRHVTEYSYKRWGGESGLDAERRRREALKYDRTLARTKGVFKRGK 756
            ++SRE +Q ++ K+ K+TYLLP+GTIAVL+F+ERDNPHHSSW K                                                                                                                                                          MKLYLRR V  YSYKRWG E GL AERRRRE+LKYDR+LARTKG+FKR +
Sbjct:   18 KMSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTK----------------------------------------------------------------------------------------------------------------------------------------------------------MKLYLRREVVAYSYKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSR 111

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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: A0A6H5KUI3_9PHAE (XPA_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.850e-15
Identity = 69/249 (27.71%), Postives = 83/249 (33.33%), Query Frame = 1

Query:   13 QLSREGYQCITKKEAKETYLLPEGTIAVLRFIERDNPHHSSWNKVSLRSSTPIIRSAENSSTSI*FQH*CFIPA*SAAFIVKASG*DASRRVPRVVPSQIILTVH*TVHCRDYARHSSCRRQASLVGDPRHQQLRARGLLYYTVVRKRALVSFLM*SGEKDTDLTWLRTALVG*RLCKKKNIHTHEILISVFPLSLEQMKLYLRRHVTEYSYKRWGGESGLDAERRRREALKYDRTLARTKGVFKRGKS 759
            ++SRE +Q +T K+ K+TYLLP+GTIAVL+F+ERDNPHHSSW K                                                                                                                                                          MKLYLRR V  YSY+RWG E GL AERRRRE+LKYDR+LARTKG+FKR +S
Sbjct:  201 KMSREEFQYVTTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTK----------------------------------------------------------------------------------------------------------------------------------------------------------MKLYLRREVVAYSYRRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRS 295

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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: A0A7S1E1A0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1A0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.070e-7
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1

Query:   40 ITKKEAKETYLLPEGTIAVLRFIERDNPHHSSWNKVSL 153
            +TKKEAKE Y LPEGT+AV  F+E++NPH   WNK+ L
Sbjct:   71 VTKKEAKERYCLPEGTLAVCSFVEKENPHRKGWNKMKL 108

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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: A0A6U3U265_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3U265_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.650e-5
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1

Query:    4 AVAQLSREGYQCITKKEAKETYLLPEGTIAVLRFIERDNPHHSSWNKVSLRSSTPIIRSA 183
            ++ +  R+    ++K EA++TY LP+GTI VL F+ERDNPH   ++K+ L S   + R A
Sbjct:   88 SLEEFERDASAYVSKTEAQKTYCLPKGTIDVLSFVERDNPHQRGFSKMKLYSRAEVRRRA 147

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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: A0A7S3XXW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXW5_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 8.840e-5
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1

Query:   13 QLSREGYQCITKKEAKETYLLPEGTIAVLRFIERDNPHHSSWNKVSL 153
            ++S + Y+ ITK E  + + LPEGTI VL FIE++NP H +W  + L
Sbjct:   34 KISNDDYKLITKAEVVQMFCLPEGTIQVLDFIEKENPRHGTWTPMKL 80

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot

BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
D7FX65_ECTSI	3.470e-16	27.42	XPA_C domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KUI3_9PHAE	3.850e-15	27.71	XPA_C domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A7S1E1A0_9STRA	7.070e-7	63.16	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A6U3U265_9STRA	2.650e-5	41.67	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S3XXW5_HETAK	8.840e-5	46.81	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig52177	contig	H-elongata_contig52177:355..3486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	82.4
Seed ortholog evalue	8.9e-14
Seed eggNOG ortholog	2880.D7FX65
Preferred name	XPA
KEGG ko	ko:K10847
KEGG Pathway	ko01524,ko03420,map01524,map03420
GOs	GO:0000003,GO:0000109,GO:0000110,GO:0000715,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008340,GO:0008630,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009650,GO:0009791,GO:0009987,GO:0010225,GO:0010259,GO:0012501,GO:0016043,GO:0019904,GO:0022607,GO:0023052,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033683,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0035264,GO:0035556,GO:0036297,GO:0040007,GO:0040025,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051276,GO:0051641,GO:0051716,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070727,GO:0070911,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:1901255,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.	nucleotide-excision repair involved in interstrand cross-link repair
EggNOG OGs	COG5145@1,KOG4017@2759
Ec32 ortholog description	DNA binding domain, putative
Ec32 ortholog	Ec-10_004460.1
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03400
Hectar predicted targeting category	other localisation
Exons	3
Model size	1560
Cds size	204
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig52177.12510.1	prot_H-elongata_contig52177.12510.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig52177 961..2274 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930852.9201677-UTR-H-elongata_contig52177:354..498	1622930852.9201677-UTR-H-elongata_contig52177:354..498	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig52177 355..498 +
1691679598.2504447-UTR-H-elongata_contig52177:354..498	1691679598.2504447-UTR-H-elongata_contig52177:354..498	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig52177 355..498 +
1622930852.9654624-UTR-H-elongata_contig52177:2274..3486	1622930852.9654624-UTR-H-elongata_contig52177:2274..3486	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig52177 2275..3486 +
1691679598.2849076-UTR-H-elongata_contig52177:2274..3486	1691679598.2849076-UTR-H-elongata_contig52177:2274..3486	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig52177 2275..3486 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930852.9378197-CDS-H-elongata_contig52177:960..1089	1622930852.9378197-CDS-H-elongata_contig52177:960..1089	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig52177 961..1089 +
1691679598.2690818-CDS-H-elongata_contig52177:960..1089	1691679598.2690818-CDS-H-elongata_contig52177:960..1089	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig52177 961..1089 +
1622930852.9526887-CDS-H-elongata_contig52177:2199..2274	1622930852.9526887-CDS-H-elongata_contig52177:2199..2274	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig52177 2200..2274 +
1691679598.277062-CDS-H-elongata_contig52177:2199..2274	1691679598.277062-CDS-H-elongata_contig52177:2199..2274	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig52177 2200..2274 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig52177:355..3486+
coding sequence from alignment at H-elongata_contig52177:355..3486+

protein sequence of mRNA_H-elongata_contig52177.12510.1

>prot_H-elongata_contig52177.12510.1 ID=prot_H-elongata_contig52177.12510.1|Name=mRNA_H-elongata_contig52177.12510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MKLYLRRHVTEYSYKRWGGESGLDAERRRREALKYDRTLARTKGVFKRGK
SNHGAAFSSAAYYDDDE*

mRNA from alignment at H-elongata_contig52177:355..3486+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig52177.12510.1 ID=mRNA_H-elongata_contig52177.12510.1|Name=mRNA_H-elongata_contig52177.12510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3132bp|location=Sequence derived from alignment at H-elongata_contig52177:355..3486+ (Himanthalia elongata Himel1 dioecious)
CATGCGGTGGCGCAGCTGTCTCGGGAAGGCTACCAGTGCATCACCAAGAA
AGAGGCGAAGGAGACCTACCTGCTGCCAGAGGGCACCATTGCCGTCCTCA
GGTTCATCGAGAGGGACAATCCGCATCACTCCAGCTGGAATAAGGTGAGC
CTGCGATCCTCTACCCCGATCATCCGGTCGGCCGAGAACTCCTCTACTTC
AATTTAATTCCAACACTAGTGTTTTATTCCAGCCTGAAGCGCAGCCTTTA
TTGTAAAGGCTTCAGGTTAAGACGCATCCCGCCGAGTCCCGAGGGTCGTG
CCGTCACAGATCATTTTAACAGTACATTAGACAGTACATTGTAGAGATTA
TGCAAGGCATTCCAGTTGCCGGCGACAAGCCTCTCTGGTTGGAGACCCAA
GGCATCAGCAACTCAGAGCTCGAGGTCTATTATATTATACAGTAGTACGC
AAGCGCGCGCTTGTGTCGTTCTTGATGTGATCGGGAGAAAAAGATACTGA
CTTGACTTGGCTACGTACGGCGCTCGTTGGGTAGCGGCTGTGCAAAAAAA
AAAACATACACACACATGAAATTTTGATAAGCGTGTTTCCTCTTTCTCTC
GAACAGATGAAGCTGTACCTCCGTCGACATGTGACGGAGTACAGCTACAA
GCGCTGGGGCGGAGAATCGGGCCTCGATGCCGAGAGACGAAGGCGAGAGG
CACTCAAGTACGACAGGACCCTCGCGCGGACGAAGGTGCGCGCCCTCATC
CCCCCCCCCCGCGTCCCCCCCCCCCCTTCCGTGCTGCCCCCCCCTCCCCC
CCCCCCGGGTGGTGTGCGCTTGGTTCCCCCCCCTCATCTCCTTACTTCCC
CCCTTACCCCTCCTCGAGTGTATGTCGATGTTTGTTACTGGGCTCGTGGT
GGCGAGGTGCAATGCGATGTGGCGGTGTGGCATTGCGGCCCTGATAATGT
ATACGCTCGACAGCGGCAGAGGACTTCTCCTGCCCTGGTTGCCCCTGATG
GTTGTCTCTTGTAACGCTTCCAGTTGAGATTATTCGTGAGCCTGTTTTAT
AGTTGGGAGGTCGAACTATTATAGAGAGTACGAGTGGAGATGTGCCTTAC
AAGATACAGAGCCTGTTAATATGTATATCATGATGATAATACATGACTTA
TTGAGAGTATGGTATGTATAGTCCCGTTGCGGCGCTGGCGAGGGGGGGGA
GGGTGTGATAGCCTGTAGCTTGTGGCCCGTAGCCCTTAGCCCTTAGCAGA
TGGGATTGGGTACTGTCGGCGCTCGGAGGGTGGTGGACTCGTCGATGTTT
AGTTTGTGATACTTTTGTTGAAGGTTTTAAAATATTATAACTGGAGGGGC
TCTTTCTGAGGATGGTGTTTGCTGGGGAATGAAAGCCTAGCACGCTGGAT
GCCTCCCTCCATCGGCAGAACGTGTTAATATTGATATACCGAAGTAGTAT
TTAGTATTAACAGTATAATGATCAATACTTTTATATACCAGTATAACGAT
CAATACTTTTATTATTACTACTATAATTGATATACGCTAGATGTCGCATT
GGTGGCGTTTCTGTTACAAATGATATAATAGGTAAAACGAACACAAGTAC
GCCCAAAGTGTAACTGCCGGTCCTTGAATCATTGATAGAAGTAGGGTGGA
TATTTTGGTGAAACGTACGTGGCGGGTTGATGGTTGAGTGATGGTACTGT
AGACGTTATTTTGGGGACGAGTGCATACTGGTATAATATTATAATATTAA
TAGTAAGATAACTGCGCGTGGGTTTCTCCTCGCCCACCTAGAGCTCGTTG
ACGTCCACCGCGAGTCTCCTCGGGTCTCTACTAACTCCCTCGCAGGGCGT
TTTCAAGCGGGGCAAGTCCAACCACGGAGCCGCGTTCTCAAGCGCGGCGT
ACTACGATGACGACGAATAGGATTAAGAATTCGAACGTGCAGGGATGTGG
AGCTTGTCGGGGTATTTGTGCTGGGATGTGGCTTAGCCCTGGGGGATGAT
GCATTTTGGTCCATAAGGCAGCTACAGTCGGTAGGATTCTAAATTCTAGA
TATATGTACATGGAAAGTGCCTTCAGCCCGACGTTTGCATGTACTGATCC
ACAAGTCCTGTCGTAGATGGTTGTGCCTTTGTAGCCTTCGTAACCATTGT
AACCGTCGGCGTGAAGAACGACAAAACGTCTCGGGCCGTTCAAGCCCATT
TGGAACGTAACGCTGCAGGGAAAAACGTTGGCTAATGTCGCCGCCGCAGC
CCACATTCTGTGTTGTGACTGTTGTGACCAAGCTTTTTTCATCGTTTGTA
TCTCTTTTTAAAAAAAAATCTCGACGGTAGCTCAATCGTCGTCATCATTC
TGCCTCTCTCAGGGCCCCCGAAGCTCAAGTGTTGGTCTGTTCGCCTTGAG
AAACGGCACGTCCGCTTGTGTGTTTTGTGTATGTCTGTCAGTATGCCGCG
AGGCAATGGGCACATACATTATATAGTATTATTCGAGTAAGTAACTAGTT
TAATAGTGTAATACAGCACTTCGGTATAATAGTTATTAATAGTTGCTTTG
GCCGTTGACACATATCATACACACATGCACAACAACTGCCTCGTGACACT
CGTGCGAGCTTTCTTCGAGTGGGCGTCGTGGTTTCGAGTACTTTAGTATT
GACCGCACCGCCGCTACGACGTTGTCCCCTATAAGAGCTATACTATACTA
TTAATATTGTATAGCATATATCATTACGATATTAACGGGGGGGGGGGTTA
TGAAATCGGTGGTGGGATATTGTGTCTCCAGGATCTCGATTTGGTATTAG
CCAACTGTTGCTGTCATCTATATATTTGCATTGGTGGTTCTATATTAAAA
ACAAGAGATAAATAGCTTGACTCTGTATTACTAATAATATACCACTCCTA
ATGTTTCAGCTCTAATGCTAAGGAGCGGATTTCCCCGTGATCATTTTGAT
TTATTGATTGATTTATTGATTTAATTTTCATATAATTTTTTAGTAAAAAC
GTATCGAACTCTCCATACGAAAGCAAACAGCAATGATGCTACTATTATTT
TCTTGTCGTCAGCAGCAGCTTGCGATTTCTTTGGGGGAGGGGTTCTCCTC
GTTATCTGTGTAATAACTACTATACAATGGGG

Coding sequence (CDS) from alignment at H-elongata_contig52177:355..3486+

>mRNA_H-elongata_contig52177.12510.1 ID=mRNA_H-elongata_contig52177.12510.1|Name=mRNA_H-elongata_contig52177.12510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig52177:355..3486+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTGTACCTCCGTCGACATGTGACGGAGTACAGCTACAAGCGCTG
GGGCGGAGAATCGGGCCTCGATGCCGAGAGACGAAGGCGAGAGGCACTCA
AGTACGACAGGACCCTCGCGCGGACGAAGATGAAGCTGTACCTCCGTCGA
CATGTGACGGAGTACAGCTACAAGCGCTGGGGCGGAGAATCGGGCCTCGA
TGCCGAGAGACGAAGGCGAGAGGCACTCAAGTACGACAGGACCCTCGCGC
GGACGAAGGGCGTTTTCAAGCGGGGCAAGTCCAACCACGGAGCCGCGTTC
TCAAGCGCGGCGTACTACGATGACGACGAATAGGGCGTTTTCAAGCGGGG
CAAGTCCAACCACGGAGCCGCGTTCTCAAGCGCGGCGTACTACGATGACG
ACGAATAG