mRNA_H-elongata_contig52173.12509.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52173.12509.1
Unique NamemRNA_H-elongata_contig52173.12509.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52173.12509.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.070e-15
Identity = 51/146 (34.93%), Postives = 68/146 (46.58%), Query Frame = 1 
Query:    1 LTANATVIIRLSVRAGALTQPLPASTVESGQAVSFDGVIAFARI--------------------------YPRFQSASCGHLR-------------------------------LLKLVRVMGTYCRPRFEVAGSAIIDLGNVGHT 267
            L A AT ++RL +R G LT PLP + VE+G+AV FDG++AFARI                          +   ++A  G  R                               L+KL+R +GT+CRPRFEV G+  +DLGNVGHT
Sbjct: 1636 LPARATAVVRLCIRTGELTAPLPTAAVENGKAVGFDGIVAFARIGGDCASSVVAANGTSAAARAGLYEQQFGERRAAVPGDTRALLLPERVYCSGSGATTGEEDNPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHT 1781
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BLAST of mRNA_H-elongata_contig52173.12509.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.080e-15
Identity = 52/147 (35.37%), Postives = 68/147 (46.26%), Query Frame = 1 
Query:    1 LTANATVIIRLSVRAGALTQPLPASTVESGQAVSFDGVIAFARI--------------------------YPRFQSASCGHLR--------------------------------LLKLVRVMGTYCRPRFEVAGSAIIDLGNVGHT 267
            L A AT ++RL +R G LT PLP + VESG+AV FDG++AFARI                          +   ++A  G  R                                L+KL+R +GT+CRPRFEV G+  +DLGNVGHT
Sbjct: 3368 LPARATAVVRLCIRTGELTAPLPTAAVESGKAVDFDGIVAFARIGGACASSVAVGNATAAAARAGLYEQQFGGRRAAVPGDTRALFLPERVYCCGSGATTDGEEDDPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHT 3514
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52173.12509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE5.070e-1534.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI5.080e-1535.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52173contigH-elongata_contig52173:2667..3026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.8425667-CDS-H-elongata_contig52173:2666..28031622930852.8425667-CDS-H-elongata_contig52173:2666..2803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52173 2667..2803 -
1691679598.2315314-CDS-H-elongata_contig52173:2666..28031691679598.2315314-CDS-H-elongata_contig52173:2666..2803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52173 2667..2803 -
1622930852.8661685-CDS-H-elongata_contig52173:2893..30261622930852.8661685-CDS-H-elongata_contig52173:2893..3026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52173 2894..3026 -
1691679598.2412796-CDS-H-elongata_contig52173:2893..30261691679598.2412796-CDS-H-elongata_contig52173:2893..3026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52173 2894..3026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52173.12509.1prot_H-elongata_contig52173.12509.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52173 2667..3026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52173.12509.1

>prot_H-elongata_contig52173.12509.1 ID=prot_H-elongata_contig52173.12509.1|Name=mRNA_H-elongata_contig52173.12509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
LTANATVIIRLSVRAGALTQPLPASTVESGQAVSFDGVIAFARIYPRFQS
ASCGHLRLLKLVRVMGTYCRPRFEVAGSAIIDLGNVGHTV
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mRNA from alignment at H-elongata_contig52173:2667..3026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52173.12509.1 ID=mRNA_H-elongata_contig52173.12509.1|Name=mRNA_H-elongata_contig52173.12509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig52173:2667..3026- (Himanthalia elongata Himel1 dioecious)
CTCACTGCTAACGCAACGGTGATTATCCGACTGAGCGTTAGGGCTGGGGC
ACTGACTCAGCCGTTGCCGGCATCAACAGTAGAAAGTGGCCAGGCAGTGT
CTTTCGACGGCGTGATCGCCTTTGCGAGAATCTGTGTGGCGTCCGCTAGA
CACGATTCGATGTTTTTACGCCGGAGGGAAAGTTTGGGTGGTGAAGGTGT
GCCGGATAGATTGGAGTACCAAGACCCTAGATTTCAATCCGCATCGTGTG
GACATCTCCGACTGTTAAAGCTCGTGAGAGTCATGGGGACGTACTGTCGA
CCGAGATTTGAGGTTGCAGGGTCGGCGATCATCGACCTCGGTAACGTCGG
TCACACGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig52173:2667..3026-

>mRNA_H-elongata_contig52173.12509.1 ID=mRNA_H-elongata_contig52173.12509.1|Name=mRNA_H-elongata_contig52173.12509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig52173:2667..3026- (Himanthalia elongata Himel1 dioecious)
CTCACTGCTAACGCAACGGTGATTATCCGACTGAGCGTTAGGGCTGGGGC
ACTGACTCAGCCGTTGCCGGCATCAACAGTAGAAAGTGGCCAGGCAGTGT
CTTTCGACGGCGTGATCGCCTTTGCGAGAATCTCTCACTGCTAACGCAAC
GGTGATTATCCGACTGAGCGTTAGGGCTGGGGCACTGACTCAGCCGTTGC
CGGCATCAACAGTAGAAAGTGGCCAGGCAGTGTCTTTCGACGGCGTGATC
GCCTTTGCGAGAATCTACCCTAGATTTCAATCCGCATCGTGTGGACATCT
CCGACTGTTAAAGCTCGTGAGAGTCATGGGGACGTACTGTCGACCGAGAT
TTGAGGTTGCAGGGTCGGCGATCATCGACCTCGGTAACGTCGGTCACACG
GTAACCCTAGATTTCAATCCGCATCGTGTGGACATCTCCGACTGTTAAAG
CTCGTGAGAGTCATGGGGACGTACTGTCGACCGAGATTTGAGGTTGCAGG
GTCGGCGATCATCGACCTCGGTAACGTCGGTCACACGGTA
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