prot_H-elongata_contig52158.12507.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52158.12507.1
Unique Nameprot_H-elongata_contig52158.12507.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length277
Homology
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: D8LBN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN3_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 6.580e-54
Identity = 119/284 (41.90%), Postives = 148/284 (52.11%), Query Frame = 0
Query:   33 GIGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFAT---------------------------------------------------TAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVT-ATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAK 264
            GI GRYKL+VASNRDE L RPTAP+HFWKDA SNLLAG                RDLV+GGTWLGV+RSGKFAT+TNV+S W++ +  V +G  + + A                                                      +++  +  A + +      W  +L      +  ASV L V  A A  RKSRGGLV++FLKG E A+ YC+R+ K       +R RYAGFNL+L DP  AW+LSNR E   TRLP G YGIS  +LD PWAK
Sbjct:   18 GIRGRYKLIVASNRDEDLGRPTAPIHFWKDAGSNLLAG----------------RDLVAGGTWLGVSRSGKFATLTNVSSTWENVLEDVTLGGWANKVAAVAXXXXXXXXXXXXXXXXXRAGHENGISXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSLSSSSLGWLYALCAAAGLVTAASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCSRLSK-------ERRRYAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAK 278          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A6H5KFS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS5_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.500e-52
Identity = 124/296 (41.89%), Postives = 153/296 (51.69%), Query Frame = 0
Query:   33 GIGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAA-----------------------------------------------------------FATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAF--RKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKVYY 267
            GI GRYKL+VASNRDE L RPTAP+HFWKDA SNLLAG    A          RRDLV+GGTWLGV+RSGKFAT+TNV S W+  +  V +G  + +AA                                                           F+T A      +++     G  +AL      AG+ TA+   +  A A    RKSRGGLV++FLKG E A+ YCAR+ K       +R R+AGFNL+L DP  AW+LSNR E   TRLP G YGIS  +LD PWAK+ +
Sbjct:   18 GIRGRYKLIVASNRDEDLGRPTAPIHFWKDAGSNLLAGEYPKARP--------RRDLVAGGTWLGVSRSGKFATLTNVFSTWESMLEVVALGGWANKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLGFSTPA-----GSSSSSSLLGWLYALCAA---AGLVTAASVPLAVAVARIKARKSRGGLVADFLKGDEDAETYCARLSK-------ERRRFAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAKMLH 290          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: B7S3D3_9GAMM (Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 TaxID=247634 RepID=B7S3D3_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 3.710e-21
Identity = 74/235 (31.49%), Postives = 95/235 (40.43%), Query Frame = 0
Query:   34 IGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRG---EEAATRLPRGLYGISTASLDTPWAKV 265
            +  +Y LVVA+NRDE   RPT   H+W +             H  +L  R R+    +GG+W+GVNRSG FA VTN                                                                   T A  +SRG LV  +L+G  SA QY  ++    G        YAGFNL+L D    W +SN G   E++  RL  G+YG+S ASLDTPW KV
Sbjct:   10 VNNQYPLVVAANRDEFHQRPTDASHYWLE-------------HPQVLAGRDRQ----AGGSWMGVNRSGHFAAVTNSRDPEQ-------------------------------------------------------------TKAAERSRGELVLGYLQGDLSAQQYLDQLSLRAGA-------YAGFNLLLGDREDLWYVSNSGPSSEQSPRRLTPGIYGLSNASLDTPWPKV 159          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A1W9LDS1_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium A6 TaxID=1934249 RepID=A0A1W9LDS1_9DELT)

HSP 1 Score: 94.7 bits (234), Expect = 2.230e-19
Identity = 74/228 (32.46%), Postives = 96/228 (42.11%), Query Frame = 0
Query:   38 YKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            Y+L++A+NRDE  +RPTAPL FW +A  ++LAG                +DL SGGTWLG+ ++G+   +TN     D  V  +                                                             SRG LV  FLKGSES   Y  ++ +A GE      RY GFNL+  D    +  SNR E+   RL  GLYG+S   LDTPW KV
Sbjct:   14 YRLILAANRDEFYDRPTAPLGFWDEAP-HVLAG----------------KDLKSGGTWLGITKAGRICAITNFR---DPAVQLIDA----------------------------------------------------------PSRGFLVENFLKGSESPQIYLQKVKEA-GE------RYNGFNLLAGDESGIFCCSNRSEDII-RLSPGLYGLSNHLLDTPWPKV 155          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A353MA24_9DELT (Uncharacterized protein n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MA24_9DELT)

HSP 1 Score: 93.2 bits (230), Expect = 7.030e-19
Identity = 72/229 (31.44%), Postives = 98/229 (42.79%), Query Frame = 0
Query:   37 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            RY L++A NRDE   RPTA   +W+DA ++L AG                RDLV GGTWLGV  +G+ A +TN            GV                                                          +SRG LVSEFLKG  +A++Y  R+   RG+       Y+G+NL+L DP   +  SN+ +E  T +P G++G+S   L+TPW KV
Sbjct:   13 RYPLILAVNRDEFYQRPTAAAAYWEDA-AHLFAG----------------RDLVHGGTWLGVTSTGRIAALTNYRQP-----KLPGVHG--------------------------------------------------------RSRGELVSEFLKGETTAEEYLERL---RGKGV----HYSGYNLLLGDPGRLYCYSNKSDEIVT-IPPGVHGLSNHLLNTPWPKV 155          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A523P9S6_9PROT (NRDE family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P9S6_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 3.840e-18
Identity = 71/229 (31.00%), Postives = 96/229 (41.92%), Query Frame = 0
Query:   37 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            RY L+VA+NR+E  +RPTA   FW DA S +LAG                RDL+  GTWLG+ R G+FA +TN  S                                                             V A  +   SRGGLVSEFL+G+++ D Y A ++        +   Y+GF+L++ D       SN+ E    +L  GLYG+S   LDTPW K+
Sbjct:   13 RYPLIVAANREEAYDRPTAAAAFWDDAPS-VLAG----------------RDLLQRGTWLGITRQGRFAALTNFRS-------------------------------------------------------------VEANRSDGPSRGGLVSEFLRGNQTPDDYLAEVVA-------NSHSYSGFSLIVGDGSKFRYYSNQ-EHEPRQLVSGLYGVSNHLLDTPWPKL 155          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A365KAS4_9BACL (Uncharacterized protein n=12 Tax=Planococcus TaxID=1372 RepID=A0A365KAS4_9BACL)

HSP 1 Score: 89.0 bits (219), Expect = 2.590e-17
Identity = 71/229 (31.00%), Postives = 92/229 (40.17%), Query Frame = 0
Query:   37 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            RYKL+VA+NRDE   RP AP HFW+D+   +LAG                RDL   GTWLGVN++G+FA +TN                                                 G + AG                 KSRG LV++FL G  S   Y          +A+D   YAGFNL+  D    +  +N   E    +P G +G+S   L+TPW KV
Sbjct:   13 RYKLIVAANRDEFYGRPAAPAHFWEDSP-RILAG----------------RDLSQMGTWLGVNKAGRFAALTNYRDP---------------------------------------------GHMAAGA----------------KSRGELVTQFLDGHLSPQDYL---------QAIDDREYAGFNLIAGDAEGLYYYNNIHGEPV-EIPPGTHGLSNHFLNTPWPKV 153          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: UPI001ADB1978 (NRDE family protein n=1 Tax=Bacillus sp. 165 TaxID=1529117 RepID=UPI001ADB1978)

HSP 1 Score: 89.0 bits (219), Expect = 2.830e-17
Identity = 73/232 (31.47%), Postives = 94/232 (40.52%), Query Frame = 0
Query:   34 IGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            I   Y L+VA+NRDE  NRPTA  HFW+DA  ++LAG                RDL   GTW+GV + G+FA +TN     +                                                          +T+    ++SRG +VS+FL G  S   Y   I + R E       Y GFNL++ D  S +  SN  E+    L  GLYGIS   LDTPW KV
Sbjct:   10 IDPNYDLIVAANRDEFYNRPTARAHFWEDAP-HVLAG----------------RDLEKMGTWMGVTKQGRFAALTNYRDPSE----------------------------------------------------------ITSN---KRSRGEVVSQFLLGEASPQDYVKHIQQNRRE-------YPGFNLLVGDRNSLFYYSNI-EDNIHLLQPGLYGISNHLLDTPWPKV 155          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: UPI0014076C70 (NRDE family protein n=1 Tax=Pseudomaricurvus alcaniphilus TaxID=1166482 RepID=UPI0014076C70)

HSP 1 Score: 87.8 bits (216), Expect = 7.660e-17
Identity = 73/228 (32.02%), Postives = 90/228 (39.47%), Query Frame = 0
Query:   38 YKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            Y L+VA+NRDE   RPT   HFW D             H  IL  R    DL +GGTWLGVNR+G  A VTNV +  D+                                                                 +SRG L SEFL G    D+   + + AR ++      Y GFNL+L +       SNRG  A   L  G+YG+S A+LDTPW KV
Sbjct:   14 YPLIVAANRDEFYARPTRSAHFWPD-------------HPQILAGR----DLQAGGTWLGVNRAGHLAAVTNVRNPADNLPR-------------------------------------------------------------PRSRGELPSEFLCGDGDIDR-ALQDIGARHDQ------YNGFNLLLANRTQLAYTSNRGTTAPA-LDAGVYGLSNATLDTPWPKV 155          
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A3S0UYY6_9GAMM (NRDE family protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0UYY6_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 2.860e-16
Identity = 69/232 (29.74%), Postives = 93/232 (40.09%), Query Frame = 0
Query:   37 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVN---SEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 265
            R+ L+VA+NRDE  +RPTAPL FW DA  ++LAG                RDL  GGTW+G+   G+FA +TN     S   D                                                                  SRG LVS++L+G++SA  Y   +L            Y GFNL+L D    +  SN+G+     +P G+YG+S   LDTPW K+
Sbjct:   13 RWPLLVAANRDEFHDRPTAPLAFWTDAP-HVLAG----------------RDLREGGTWMGLGHGGRFAALTNYRDPRSHQPD----------------------------------------------------------------APSRGQLVSDYLRGTQSARAYLDALLP-------HAAAYNGFNLLLSDATGLYYYSNQGDAPRALVP-GIYGLSNHLLDTPWPKL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBN3_ECTSI6.580e-5441.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFS5_9PHAE1.500e-5241.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7S3D3_9GAMM3.710e-2131.49Uncharacterized protein n=1 Tax=marine gamma prote... [more]
A0A1W9LDS1_9DELT2.230e-1932.46Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A353MA24_9DELT7.030e-1931.44Uncharacterized protein n=2 Tax=Geobacteraceae Tax... [more]
A0A523P9S6_9PROT3.840e-1831.00NRDE family protein n=1 Tax=Proteobacteria bacteri... [more]
A0A365KAS4_9BACL2.590e-1731.00Uncharacterized protein n=12 Tax=Planococcus TaxID... [more]
UPI001ADB19782.830e-1731.47NRDE family protein n=1 Tax=Bacillus sp. 165 TaxID... [more]
UPI0014076C707.660e-1732.02NRDE family protein n=1 Tax=Pseudomaricurvus alcan... [more]
A0A3S0UYY6_9GAMM2.860e-1629.74NRDE family protein n=1 Tax=Candidatus Competibact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008551Transport and Golgi organisation protein 2PFAMPF05742TANGO2coord: 149..266
e-value: 6.4E-13
score: 49.3
coord: 37..112
e-value: 8.6E-17
score: 62.0
IPR008551Transport and Golgi organisation protein 2PANTHERPTHR17985SER/THR-RICH PROTEIN T10 IN DGCR REGIONcoord: 38..265
NoneNo IPR availablePANTHERPTHR17985:SF8TRANSPORT AND GOLGI ORGANIZATION PROTEIN 2 HOMOLOGcoord: 38..265
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 175..276
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 130..147
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..174
NoneNo IPR availableTMHMMTMhelixcoord: 125..147
NoneNo IPR availableTMHMMTMhelixcoord: 154..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52158contigH-elongata_contig52158:2020..3608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52158.12507.1mRNA_H-elongata_contig52158.12507.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52158 2020..3608 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52158.12507.1 ID=prot_H-elongata_contig52158.12507.1|Name=mRNA_H-elongata_contig52158.12507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
CIVFIYHAIGDPLGDHPETTRTSSSLVDKPVTGIGGRYKLVVASNRDEIL
NRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNR
SGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRR
GGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQ
YCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGL
YGISTASLDTPWAKVYYQCAGSVFKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008551TANGO2