mRNA_H-elongata_contig52158.12507.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: D8LBN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN3_ECTSI) HSP 1 Score: 186 bits (472), Expect = 6.580e-54 Identity = 119/284 (41.90%), Postives = 148/284 (52.11%), Query Frame = 1
Query: 97 GIGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFAT---------------------------------------------------TAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVT-ATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAK 792
GI GRYKL+VASNRDE L RPTAP+HFWKDA SNLLAG RDLV+GGTWLGV+RSGKFAT+TNV+S W++ + V +G + + A +++ + A + + W +L + ASV L V A A RKSRGGLV++FLKG E A+ YC+R+ K +R RYAGFNL+L DP AW+LSNR E TRLP G YGIS +LD PWAK
Sbjct: 18 GIRGRYKLIVASNRDEDLGRPTAPIHFWKDAGSNLLAG----------------RDLVAGGTWLGVSRSGKFATLTNVSSTWENVLEDVTLGGWANKVAAVAXXXXXXXXXXXXXXXXXRAGHENGISXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSLSSSSLGWLYALCAAAGLVTAASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCSRLSK-------ERRRYAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAK 278
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A6H5KFS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS5_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.500e-52 Identity = 124/296 (41.89%), Postives = 153/296 (51.69%), Query Frame = 1
Query: 97 GIGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAA-----------------------------------------------------------FATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAF--RKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKVYY 801
GI GRYKL+VASNRDE L RPTAP+HFWKDA SNLLAG A RRDLV+GGTWLGV+RSGKFAT+TNV S W+ + V +G + +AA F+T A +++ G +AL AG+ TA+ + A A RKSRGGLV++FLKG E A+ YCAR+ K +R R+AGFNL+L DP AW+LSNR E TRLP G YGIS +LD PWAK+ +
Sbjct: 18 GIRGRYKLIVASNRDEDLGRPTAPIHFWKDAGSNLLAGEYPKARP--------RRDLVAGGTWLGVSRSGKFATLTNVFSTWESMLEVVALGGWANKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLGFSTPA-----GSSSSSSLLGWLYALCAA---AGLVTAASVPLAVAVARIKARKSRGGLVADFLKGDEDAETYCARLSK-------ERRRFAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAKMLH 290
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: B7S3D3_9GAMM (Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 TaxID=247634 RepID=B7S3D3_9GAMM) HSP 1 Score: 99.4 bits (246), Expect = 3.710e-21 Identity = 74/235 (31.49%), Postives = 95/235 (40.43%), Query Frame = 1
Query: 100 IGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRG---EEAATRLPRGLYGISTASLDTPWAKV 795
+ +Y LVVA+NRDE RPT H+W + H +L R R+ +GG+W+GVNRSG FA VTN T A +SRG LV +L+G SA QY ++ G YAGFNL+L D W +SN G E++ RL G+YG+S ASLDTPW KV
Sbjct: 10 VNNQYPLVVAANRDEFHQRPTDASHYWLE-------------HPQVLAGRDRQ----AGGSWMGVNRSGHFAAVTNSRDPEQ-------------------------------------------------------------TKAAERSRGELVLGYLQGDLSAQQYLDQLSLRAGA-------YAGFNLLLGDREDLWYVSNSGPSSEQSPRRLTPGIYGLSNASLDTPWPKV 159
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A1W9LDS1_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium A6 TaxID=1934249 RepID=A0A1W9LDS1_9DELT) HSP 1 Score: 94.7 bits (234), Expect = 2.230e-19 Identity = 74/228 (32.46%), Postives = 96/228 (42.11%), Query Frame = 1
Query: 112 YKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
Y+L++A+NRDE +RPTAPL FW +A ++LAG +DL SGGTWLG+ ++G+ +TN D V + SRG LV FLKGSES Y ++ +A GE RY GFNL+ D + SNR E+ RL GLYG+S LDTPW KV
Sbjct: 14 YRLILAANRDEFYDRPTAPLGFWDEAP-HVLAG----------------KDLKSGGTWLGITKAGRICAITNFR---DPAVQLIDA----------------------------------------------------------PSRGFLVENFLKGSESPQIYLQKVKEA-GE------RYNGFNLLAGDESGIFCCSNRSEDII-RLSPGLYGLSNHLLDTPWPKV 155
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A353MA24_9DELT (Uncharacterized protein n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MA24_9DELT) HSP 1 Score: 93.2 bits (230), Expect = 7.030e-19 Identity = 72/229 (31.44%), Postives = 98/229 (42.79%), Query Frame = 1
Query: 109 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
RY L++A NRDE RPTA +W+DA ++L AG RDLV GGTWLGV +G+ A +TN GV +SRG LVSEFLKG +A++Y R+ RG+ Y+G+NL+L DP + SN+ +E T +P G++G+S L+TPW KV
Sbjct: 13 RYPLILAVNRDEFYQRPTAAAAYWEDA-AHLFAG----------------RDLVHGGTWLGVTSTGRIAALTNYRQP-----KLPGVHG--------------------------------------------------------RSRGELVSEFLKGETTAEEYLERL---RGKGV----HYSGYNLLLGDPGRLYCYSNKSDEIVT-IPPGVHGLSNHLLNTPWPKV 155
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A523P9S6_9PROT (NRDE family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P9S6_9PROT) HSP 1 Score: 91.3 bits (225), Expect = 3.840e-18 Identity = 71/229 (31.00%), Postives = 96/229 (41.92%), Query Frame = 1
Query: 109 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
RY L+VA+NR+E +RPTA FW DA S +LAG RDL+ GTWLG+ R G+FA +TN S V A + SRGGLVSEFL+G+++ D Y A ++ + Y+GF+L++ D SN+ E +L GLYG+S LDTPW K+
Sbjct: 13 RYPLIVAANREEAYDRPTAAAAFWDDAPS-VLAG----------------RDLLQRGTWLGITRQGRFAALTNFRS-------------------------------------------------------------VEANRSDGPSRGGLVSEFLRGNQTPDDYLAEVVA-------NSHSYSGFSLIVGDGSKFRYYSNQ-EHEPRQLVSGLYGVSNHLLDTPWPKL 155
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A365KAS4_9BACL (Uncharacterized protein n=12 Tax=Planococcus TaxID=1372 RepID=A0A365KAS4_9BACL) HSP 1 Score: 89.0 bits (219), Expect = 2.590e-17 Identity = 71/229 (31.00%), Postives = 92/229 (40.17%), Query Frame = 1
Query: 109 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
RYKL+VA+NRDE RP AP HFW+D+ +LAG RDL GTWLGVN++G+FA +TN G + AG KSRG LV++FL G S Y +A+D YAGFNL+ D + +N E +P G +G+S L+TPW KV
Sbjct: 13 RYKLIVAANRDEFYGRPAAPAHFWEDSP-RILAG----------------RDLSQMGTWLGVNKAGRFAALTNYRDP---------------------------------------------GHMAAGA----------------KSRGELVTQFLDGHLSPQDYL---------QAIDDREYAGFNLIAGDAEGLYYYNNIHGEPV-EIPPGTHGLSNHFLNTPWPKV 153
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: UPI001ADB1978 (NRDE family protein n=1 Tax=Bacillus sp. 165 TaxID=1529117 RepID=UPI001ADB1978) HSP 1 Score: 89.0 bits (219), Expect = 2.830e-17 Identity = 73/232 (31.47%), Postives = 94/232 (40.52%), Query Frame = 1
Query: 100 IGGRYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
I Y L+VA+NRDE NRPTA HFW+DA ++LAG RDL GTW+GV + G+FA +TN + +T+ ++SRG +VS+FL G S Y I + R E Y GFNL++ D S + SN E+ L GLYGIS LDTPW KV
Sbjct: 10 IDPNYDLIVAANRDEFYNRPTARAHFWEDAP-HVLAG----------------RDLEKMGTWMGVTKQGRFAALTNYRDPSE----------------------------------------------------------ITSN---KRSRGEVVSQFLLGEASPQDYVKHIQQNRRE-------YPGFNLLVGDRNSLFYYSNI-EDNIHLLQPGLYGISNHLLDTPWPKV 155
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: UPI0014076C70 (NRDE family protein n=1 Tax=Pseudomaricurvus alcaniphilus TaxID=1166482 RepID=UPI0014076C70) HSP 1 Score: 87.8 bits (216), Expect = 7.660e-17 Identity = 73/228 (32.02%), Postives = 90/228 (39.47%), Query Frame = 1
Query: 112 YKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVNSEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
Y L+VA+NRDE RPT HFW D H IL R DL +GGTWLGVNR+G A VTNV + D+ +SRG L SEFL G D+ + + AR ++ Y GFNL+L + SNRG A L G+YG+S A+LDTPW KV
Sbjct: 14 YPLIVAANRDEFYARPTRSAHFWPD-------------HPQILAGR----DLQAGGTWLGVNRAGHLAAVTNVRNPADNLPR-------------------------------------------------------------PRSRGELPSEFLCGDGDIDR-ALQDIGARHDQ------YNGFNLLLANRTQLAYTSNRGTTAPA-LDAGVYGLSNATLDTPWPKV 155
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Match: A0A3S0UYY6_9GAMM (NRDE family protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0UYY6_9GAMM) HSP 1 Score: 86.3 bits (212), Expect = 2.860e-16 Identity = 69/232 (29.74%), Postives = 93/232 (40.09%), Query Frame = 1
Query: 109 RYKLVVASNRDEILNRPTAPLHFWKDAKSNLLAGTRIFAHQSILCARSRRRDLVSGGTWLGVNRSGKFATVTNVN---SEWDDFVAFVGVGAMSTRAAFATTAVAATVAAATIVKRRGGTWALSLGLVCAGIATASVSLMVTATAAFRKSRGGLVSEFLKGSESADQYCARILKARGEEAMDRCRYAGFNLMLMDPRSAWMLSNRGEEAATRLPRGLYGISTASLDTPWAKV 795
R+ L+VA+NRDE +RPTAPL FW DA ++LAG RDL GGTW+G+ G+FA +TN S D SRG LVS++L+G++SA Y +L Y GFNL+L D + SN+G+ +P G+YG+S LDTPW K+
Sbjct: 13 RWPLLVAANRDEFHDRPTAPLAFWTDAP-HVLAG----------------RDLREGGTWMGLGHGGRFAALTNYRDPRSHQPD----------------------------------------------------------------APSRGQLVSDYLRGTQSARAYLDALLP-------HAAAYNGFNLLLSDATGLYYYSNQGDAPRALVP-GIYGLSNHLLDTPWPKL 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52158.12507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52158.12507.1 >prot_H-elongata_contig52158.12507.1 ID=prot_H-elongata_contig52158.12507.1|Name=mRNA_H-elongata_contig52158.12507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp CIVFIYHAIGDPLGDHPETTRTSSSLVDKPVTGIGGRYKLVVASNRDEILback to top mRNA from alignment at H-elongata_contig52158:2020..3608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52158.12507.1 ID=mRNA_H-elongata_contig52158.12507.1|Name=mRNA_H-elongata_contig52158.12507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1589bp|location=Sequence derived from alignment at H-elongata_contig52158:2020..3608- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52158:2020..3608- >mRNA_H-elongata_contig52158.12507.1 ID=mRNA_H-elongata_contig52158.12507.1|Name=mRNA_H-elongata_contig52158.12507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig52158:2020..3608- (Himanthalia elongata Himel1 dioecious)back to top |