mRNA_H-elongata_contig52089.12496.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE) HSP 1 Score: 207 bits (526), Expect = 4.370e-66 Identity = 101/122 (82.79%), Postives = 111/122 (90.98%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQPINMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMGH 366
GAGMG VFG+FLG +GDMQP+ M+NGREVPQ P +EQARLAY QTA+RSLSM RNFASFSAIFMGSECVIEKMRGK+DMMNSVYAGC TGAAFGMKQGPQAAC GC GMA FSA++DK+MGH
Sbjct: 71 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.690e-55 Identity = 92/122 (75.41%), Postives = 101/122 (82.79%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQPINMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMGH 366
G GMGL+FGMFLG +GDMQPI ++NGREVPQ PL EQAR AY T RSL MA+NFASFSAIFM SECVIEKMRGK DMMNSVY GC+TG AFG+K GP+ A GC GMAAFSAVID +MGH
Sbjct: 78 GFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA) HSP 1 Score: 141 bits (356), Expect = 6.320e-40 Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMGH 366
GA MGL+ G+FLG + DM P + ++NG+EVPQ PLKEQAR T E+ + +RNFA + +F GSEC++EK RGK D+ N V +GCVTGAA KQGPQAA LGC G AAFS VID +MGH
Sbjct: 98 GAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.580e-38 Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMGH 366
G MGLV G+FLG +GD+ P I V G+E PQPPL EQAR AY TAERS+ AR+F + +A+F G+ECVIEK RG+ D N V +GC GA GP AAC+GCAG AAFSA + +MGH
Sbjct: 69 GGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: W7TL11_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL11_9STRA) HSP 1 Score: 136 bits (342), Expect = 5.740e-38 Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMG 363
GAG+G++ G+FLG +GDM P I ++NGRE PQ P EQ RLAY T ER ARNF + +A+F G +CV+EK RGK D N+V +GC GAA KQGPQAACLGCAG AAFS +++ +MG
Sbjct: 84 GAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.470e-36 Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 13 GLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMG 363
GLV G+FLG + DM P + ++NG+EVPQ PL+EQ R T E+SL ARNFA + +F G++C++EK RG D+ NSV +GCVTGAA KQGPQAA +GC G AAFS VIDK+MG
Sbjct: 118 GLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.980e-35 Identity = 69/123 (56.10%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMGH 366
G MGL+ G+FLG + D QP I + G++VPQ P KEQAR TAE+S+ RNFA + +F GSEC++EK RGK DM N V +GC+TGAA GPQAA +GC G AAFS VIDKIMG+
Sbjct: 148 GGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGN 270
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO) HSP 1 Score: 131 bits (329), Expect = 2.250e-35 Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMGH 366
GAGMG + G+FLG + D P + ++ GR+VPQ PL+EQ R+ TAE+S A NFA + +F GSEC++EK RGK+D+ NSV +GC+TGAA K GPQ+A LGC G AAFS VID M H
Sbjct: 141 GAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: A0A1E7EXB6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXB6_9STRA) HSP 1 Score: 125 bits (315), Expect = 8.580e-35 Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 10 MGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIM 360
MGL+ G+FLG + D P I V GR+VPQ P KEQ R TAE+S+ RNFA + +F GSEC++EK RGK DM N V +GC+TGAA K GPQAA +GC G AAFS VID M
Sbjct: 17 MGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC) HSP 1 Score: 129 bits (323), Expect = 1.180e-34 Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 1 GAGMGLVFGMFLGLIGDMQP-INMVNGREVPQPPLKEQARLAYTQTAERSLSMARNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCVTGAAFGMKQGPQAACLGCAGMAAFSAVIDKIMG 363
G MGLV G+FLG + DM P + ++ G+EVPQ PLKEQ R TA++SL R FA + +F GSEC++EK RGK D+ NSV +GC+TGAA KQGPQA+ GC G A FS VID MG
Sbjct: 122 GGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52089.12496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52089.12496.1 >prot_H-elongata_contig52089.12496.1 ID=prot_H-elongata_contig52089.12496.1|Name=mRNA_H-elongata_contig52089.12496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MGLVFGMFLGLIGDMQPINMVNGREVPQPPLKEQARLAYTQTAERSLSMAback to top mRNA from alignment at H-elongata_contig52089:92..1159+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52089.12496.1 ID=mRNA_H-elongata_contig52089.12496.1|Name=mRNA_H-elongata_contig52089.12496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-elongata_contig52089:92..1159+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52089:92..1159+ >mRNA_H-elongata_contig52089.12496.1 ID=mRNA_H-elongata_contig52089.12496.1|Name=mRNA_H-elongata_contig52089.12496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig52089:92..1159+ (Himanthalia elongata Himel1 dioecious)back to top |