mRNA_H-elongata_contig5208.12495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5208.12495.1
Unique NamemRNA_H-elongata_contig5208.12495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5208.12495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5208contigH-elongata_contig5208:10745..11073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930851.5478003-CDS-H-elongata_contig5208:10744..110711622930851.5478003-CDS-H-elongata_contig5208:10744..11071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5208 10745..11071 +
1691679597.6577919-CDS-H-elongata_contig5208:10744..110711691679597.6577919-CDS-H-elongata_contig5208:10744..11071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5208 10745..11071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5208.12495.1prot_H-elongata_contig5208.12495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5208 10745..11071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5208.12495.1

>prot_H-elongata_contig5208.12495.1 ID=prot_H-elongata_contig5208.12495.1|Name=mRNA_H-elongata_contig5208.12495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
PETLDWPILLACNRARLPLPLFLLPHLWAQRSNVLTFRVPLRTGPPFSPA
CSAVNVTVSFPIWRILVACWAVIVADAVISDAAFATVAAGTSTSIPPAPL
SQRYGVGGR
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mRNA from alignment at H-elongata_contig5208:10745..11073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5208.12495.1 ID=mRNA_H-elongata_contig5208.12495.1|Name=mRNA_H-elongata_contig5208.12495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=329bp|location=Sequence derived from alignment at H-elongata_contig5208:10745..11073+ (Himanthalia elongata Himel1 dioecious)
CCGGAGACGTTGGACTGGCCTATCCTACTTGCGTGCAACCGCGCCAGACT
ACCGCTACCACTCTTCCTTCTGCCCCACCTTTGGGCGCAACGCTCCAACG
TGTTGACCTTTCGAGTGCCGCTACGGACCGGCCCCCCCTTTTCCCCAGCT
TGTTCGGCGGTCAACGTCACCGTGTCGTTTCCGATCTGGCGGATTCTCGT
CGCTTGTTGGGCGGTCATCGTCGCTGATGCCGTTATCTCCGACGCCGCAT
TCGCCACTGTCGCGGCAGGTACTTCCACCTCGATCCCTCCCGCCCCCCTC
TCTCAACGGTACGGGGTTGGTGGCCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig5208:10745..11073+

>mRNA_H-elongata_contig5208.12495.1 ID=mRNA_H-elongata_contig5208.12495.1|Name=mRNA_H-elongata_contig5208.12495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig5208:10745..11073+ (Himanthalia elongata Himel1 dioecious)
CCGGAGACGTTGGACTGGCCTATCCTACTTGCGTGCAACCGCGCCAGACT
ACCGCTACCACTCTTCCTTCTGCCCCACCTTTGGGCGCAACGCTCCAACG
TGTTGACCTTTCGAGTGCCGCTACGGACCGGCCCCCCCTTTTCCCCAGCT
TGTTCGGCGGTCAACGTCACCGTGTCGTTTCCGATCTGGCGGATTCTCGT
CGCTTGTTGGGCGGTCATCGTCGCTGATGCCGTTATCTCCGACGCCGCAT
TCGCCACTGTCGCGGCAGGTACTTCCACCTCGATCCCTCCCGCCCCCCTC
TCTCAACGGTACGGGGTTGGTGGCCGGCCGGAGACGTTGGACTGGCCTAT
CCTACTTGCGTGCAACCGCGCCAGACTACCGCTACCACTCTTCCTTCTGC
CCCACCTTTGGGCGCAACGCTCCAACGTGTTGACCTTTCGAGTGCCGCTA
CGGACCGGCCCCCCCTTTTCCCCAGCTTGTTCGGCGGTCAACGTCACCGT
GTCGTTTCCGATCTGGCGGATTCTCGTCGCTTGTTGGGCGGTCATCGTCG
CTGATGCCGTTATCTCCGACGCCGCATTCGCCACTGTCGCGGCAGGTACT
TCCACCTCGATCCCTCCCGCCCCCCTCTCTCAACGGTACGGGGTTGGTGG
CCGG
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