mRNA_H-elongata_contig52077.12494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52077.12494.1
Unique NamemRNA_H-elongata_contig52077.12494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52077.12494.1 vs. uniprot
Match: D7FIL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL3_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 6.320e-57
Identity = 184/436 (42.20%), Postives = 221/436 (50.69%), Query Frame = 1 
Query:   64 DRALEHFRQASERGISLDLPLCESLATALFIKGLQGESTEMAAWNVLDYIRQRGMEHRPEVFDHVLIYATVCGDLSFALRVCQYADEEGICCDADVRNALCRSVDLAIKNLPDTAAVT-----------------------SDGGAAGGWKVEGTNATVEELWTLDALLQRWLDTEMEEIDAEFLEEEXXXXXXXXXXXXXXXDGLNVDGKKVNTGCNS--------SFQINSPRGELGGXXXXXXFSFSWGSVCFGVPFFGRGGPSADAGXXXXGGRGXXXXXXXXXDLDYGADRFASVVDYDHGGVPPNTDGVEGDAADGGESSLRDRGRKTAEAPATSPFGGEEFCGDLLDQNSALHPDHDIISFGAQDHFGAYIPGLGRGRRRG----EGDKSWR-------SVYADIVMPYGDPHGEGEQGIMSIPVKISV 1245
            DRAL HFRQASERGI L LP+CE LA ALF+KGL+GE+TEM AWNVL+Y+RQR M  RP V++ VL+ A   GDLSFALRVCQ+ D+EG+  D  V++ L R+V+  +K LP  AAV+                       + GG  G WKVEGTNAT+ EL  LDALLQ WL+ EM E D       XXXXXXX          + V+G     G           + + +S   +  G           G +   V  F          XXXX    XXXXXXXXX     + R  S        +         D  D G+ S       TA       FGGE++CGDL DQ S   P       G   HF    P   RGRRRG      ++S R       SVYAD+VMPYG PHGEG QGI+SIPVK SV
Sbjct:  180 DRALLHFRQASERGICLPLPVCEDLALALFVKGLRGEATEMEAWNVLEYVRQRDMVPRPAVYEAVLLCALGSGDLSFALRVCQHVDDEGLVLDPHVQDTLFRTVEYVMKELPGAAAVSVSAAPPPVDGGAVAAGVRGDAAANGGGGEGEWKVEGTNATMGELRALDALLQSWLEAEMGEFDDVXXXXXXXXXXXXEEIQEFD---ITVEGSDEGDGAADLDXXXXADAAEWDSDVVDYDGGDLSTMSVHDVGHIAEDVVDF----HDXXXXXXXXXXXXXXXXXXXXXXXXXASARGPSSTSQSSSRIAWTGQHPGRDTDDYGDPSRPQSSLSTA-----PDFGGEKYCGDLTDQVSEFIP---FKGEGEDYHF----PDA-RGRRRGGVRSRQERSERHRSLDRQSVYADLVMPYGGPHGEGGQGIVSIPVKFSV 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52077.12494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIL3_ECTSI6.320e-5742.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52077contigH-elongata_contig52077:1587..3669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000170.1
Exons4
Model size1287
Cds size1287
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52077.12494.1prot_H-elongata_contig52077.12494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52077 1587..3669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930851.4271653-CDS-H-elongata_contig52077:1586..20421622930851.4271653-CDS-H-elongata_contig52077:1586..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 1587..2042 -
1691679597.6174743-CDS-H-elongata_contig52077:1586..20421691679597.6174743-CDS-H-elongata_contig52077:1586..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 1587..2042 -
1622930851.4469352-CDS-H-elongata_contig52077:2460..26201622930851.4469352-CDS-H-elongata_contig52077:2460..2620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 2461..2620 -
1691679597.6268501-CDS-H-elongata_contig52077:2460..26201691679597.6268501-CDS-H-elongata_contig52077:2460..2620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 2461..2620 -
1622930851.4829035-CDS-H-elongata_contig52077:2702..31301622930851.4829035-CDS-H-elongata_contig52077:2702..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 2703..3130 -
1691679597.6369822-CDS-H-elongata_contig52077:2702..31301691679597.6369822-CDS-H-elongata_contig52077:2702..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 2703..3130 -
1622930851.500629-CDS-H-elongata_contig52077:3426..36691622930851.500629-CDS-H-elongata_contig52077:3426..3669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 3427..3669 -
1691679597.6474545-CDS-H-elongata_contig52077:3426..36691691679597.6474545-CDS-H-elongata_contig52077:3426..3669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52077 3427..3669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52077.12494.1

>prot_H-elongata_contig52077.12494.1 ID=prot_H-elongata_contig52077.12494.1|Name=mRNA_H-elongata_contig52077.12494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=429bp
MVPPQASFLYVMCGCLRHGDADRALEHFRQASERGISLDLPLCESLATAL
FIKGLQGESTEMAAWNVLDYIRQRGMEHRPEVFDHVLIYATVCGDLSFAL
RVCQYADEEGICCDADVRNALCRSVDLAIKNLPDTAAVTSDGGAAGGWKV
EGTNATVEELWTLDALLQRWLDTEMEEIDAEFLEEEEENDEEEEDEDGDA
DDGLNVDGKKVNTGCNSSFQINSPRGELGGGGGGFFFSFSWGSVCFGVPF
FGRGGPSADAGXXXXGGRGGGGGGGGGGDLDYGADRFASVVDYDHGGVPP
NTDGVEGDAADGGESSLRDRGRKTAEAPATSPFGGEEFCGDLLDQNSALH
PDHDIISFGAQDHFGAYIPGLGRGRRRGEGDKSWRSVYADIVMPYGDPHG
EGEQGIMSIPVKISVGHEDEKNDDDDDDD
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mRNA from alignment at H-elongata_contig52077:1587..3669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52077.12494.1 ID=mRNA_H-elongata_contig52077.12494.1|Name=mRNA_H-elongata_contig52077.12494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2083bp|location=Sequence derived from alignment at H-elongata_contig52077:1587..3669- (Himanthalia elongata Himel1 dioecious)
ATGGTTCCACCACAGGCATCCTTTCTGTACGTCATGTGCGGGTGTCTCCG
CCACGGAGACGCGGACAGGGCGTTAGAGCACTTTCGGCAGGCGTCGGAAC
GAGGAATAAGCCTTGACCTACCCCTCTGCGAAAGCCTTGCGACCGCCCTG
TTCATCAAGGGTTTGCAGGGCGAGTCCACCGAAATGGCGGCGTGGAATGT
CCTGGACTACATCCGGCAGAGGGGCATGGAACACCGACCAGAGGTAGGCA
AGGAAGAGACAGATGTAGCGAGGAGGAGTTGGTTCATCTCGTACCCTTCA
GCTCTGCAGCGCTTGAGGTCGAAATCCCTTGAACTAGGTACTTGGAGTTC
ATCACCCCGCGGAGACCTTACGCCACCCCCCTGACAGCGATATGGGTGGA
ACTGGATGGGACTATTTGTGTGAAACGCGAAAGAAATATAAACAAGGCCG
CGCTCTACCCGCTGATTGTCAAATATTCCCAACATGCGCTCGGAACGTTT
TATTATTTATTATTATTATTATTATTATTATTGAAGCAGGTGTTCGATCA
TGTCTTGATCTACGCCACGGTATGCGGCGATCTCTCCTTCGCCCTCCGTG
TGTGTCAATACGCCGACGAAGAGGGCATCTGCTGTGACGCGGACGTTCGC
AACGCGCTGTGCCGCTCGGTGGACCTTGCGATCAAGAACCTGCCGGATAC
TGCCGCCGTGACGAGCGATGGCGGCGCGGCAGGAGGGTGGAAGGTGGAGG
GAACGAACGCGACTGTGGAGGAGCTGTGGACGCTTGATGCGCTGCTGCAA
CGGTGGCTCGACACGGAGATGGAAGAGATCGATGCAGAATTCCTGGAGGA
GGAGGAGGAGAATGATGAGGAGGAGGAGGATGAAGACGGCGACGCGGACG
ACGGGTTGAATGTGGATGGCAAGAAGGTGAACACTGGATGTAATAGTTCT
TTCCAAATCAACTCACCGTTAAAATTAAGATTTATAGAATTGAATTGGCT
AAACTCGGTATTGGCTTGATGAGGTAGACTTAGTACCAGGCAAAAAGAGG
AGGGGGGAGTTGGGGGGGGGGGGGGGGGGTTTTTTTTTTTCCTTTTCATG
GGGGAGTGTTTGCTTTGGGGTTCCTTTTTTTGGGCGGGGGGGGCCCTCGG
CGGACGCGGGGCNNNNNNNNNNGGGGGGGAGGGGAGGGGGGGGGGGGGGG
GGGGGGGGGGTGGGGGGGGGGGTCGTTATTTTTTCTCCTTTACATGGCGT
AATGTTCGCTTTGTGGTTCCTTCTGTAGGACGGGAGTCGCCATGCGCAGA
ATCGGGTCCTCATCTGCACGGCATGTCATCACAACTGCGCCTGTCGAGAT
AATTGAAAATGATAGACACACACACACAAAGCTGGTAGAAAGAATGTTGC
GTGCGATTATTCTCTTTCGATGTCTTACCACTCAAACCTGAAGAATTTGT
GCGCTGAATTTCCTCTTTTTGTTATTCGTAAGCATTCCACCCAAGTTCTT
CAGAATGCCGGCCTGTATTCGTACCATCCAACTCTCCCCTATTCCCTATA
TTCTGCATGTAGAAGTTGCCGTATAATTGTCGACAAGCCGCCATCCGTAC
GTGTGCGGACGCCGACAAACATCGCAGGGTGATTTGGACTACGGCGCGGA
TCGCTTCGCGAGCGTTGTTGACTACGACCACGGTGGCGTCCCACCCAACA
CCGACGGCGTCGAGGGCGACGCTGCTGATGGGGGTGAAAGCAGCCTCAGG
GACCGAGGAAGGAAAACGGCCGAGGCACCGGCGACCTCTCCTTTTGGCGG
GGAAGAGTTCTGCGGGGACCTGCTCGACCAGAATTCGGCCTTGCATCCCG
ACCACGATATCATTTCTTTTGGGGCTCAGGACCACTTCGGCGCGTATATC
CCCGGCCTCGGTCGGGGGCGAAGGCGGGGAGAGGGTGACAAGAGCTGGCG
ATCGGTTTACGCCGACATCGTAATGCCATATGGCGATCCGCACGGGGAGG
GGGAGCAGGGCATAATGTCGATCCCGGTGAAAATAAGCGTGGGGCATGAG
GATGAAAAGAACGATGACGACGACGACGACGAT
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Coding sequence (CDS) from alignment at H-elongata_contig52077:1587..3669-

>mRNA_H-elongata_contig52077.12494.1 ID=mRNA_H-elongata_contig52077.12494.1|Name=mRNA_H-elongata_contig52077.12494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2574bp|location=Sequence derived from alignment at H-elongata_contig52077:1587..3669- (Himanthalia elongata Himel1 dioecious)
ATGGTTCCACCACAGGCATCCTTTCTGTACGTCATGTGCGGGTGTCTCCG
CCACGGAGACGCGGACAGGGCGTTAGAGCACTTTCGGCAGGCGTCGGAAC
GAGGAATAAGCCTTGACCTACCCCTCTGCGAAAGCCTTGCGACCGCCCTG
TTCATCAAGGGTTTGCAGGGCGAGTCCACCGAAATGGCGGCGTGGAATGT
CCTGGACTACATCCGGCAGAGGGGCATGGAACACCGACCAGAGATGGTTC
CACCACAGGCATCCTTTCTGTACGTCATGTGCGGGTGTCTCCGCCACGGA
GACGCGGACAGGGCGTTAGAGCACTTTCGGCAGGCGTCGGAACGAGGAAT
AAGCCTTGACCTACCCCTCTGCGAAAGCCTTGCGACCGCCCTGTTCATCA
AGGGTTTGCAGGGCGAGTCCACCGAAATGGCGGCGTGGAATGTCCTGGAC
TACATCCGGCAGAGGGGCATGGAACACCGACCAGAGGTGTTCGATCATGT
CTTGATCTACGCCACGGTATGCGGCGATCTCTCCTTCGCCCTCCGTGTGT
GTCAATACGCCGACGAAGAGGGCATCTGCTGTGACGCGGACGTTCGCAAC
GCGCTGTGCCGCTCGGTGGACCTTGCGATCAAGAACCTGCCGGATACTGC
CGCCGTGACGAGCGATGGCGGCGCGGCAGGAGGGTGGAAGGTGGAGGGAA
CGAACGCGACTGTGGAGGAGCTGTGGACGCTTGATGCGCTGCTGCAACGG
TGGCTCGACACGGAGATGGAAGAGATCGATGCAGAATTCCTGGAGGAGGA
GGAGGAGAATGATGAGGAGGAGGAGGATGAAGACGGCGACGCGGACGACG
GGTTGAATGTGGATGGCAAGAAGGTGAACACTGGATGTAATAGTTCTTTC
CAAATCAACTCACCGTGTTCGATCATGTCTTGATCTACGCCACGGTATGC
GGCGATCTCTCCTTCGCCCTCCGTGTGTGTCAATACGCCGACGAAGAGGG
CATCTGCTGTGACGCGGACGTTCGCAACGCGCTGTGCCGCTCGGTGGACC
TTGCGATCAAGAACCTGCCGGATACTGCCGCCGTGACGAGCGATGGCGGC
GCGGCAGGAGGGTGGAAGGTGGAGGGAACGAACGCGACTGTGGAGGAGCT
GTGGACGCTTGATGCGCTGCTGCAACGGTGGCTCGACACGGAGATGGAAG
AGATCGATGCAGAATTCCTGGAGGAGGAGGAGGAGAATGATGAGGAGGAG
GAGGATGAAGACGGCGACGCGGACGACGGGTTGAATGTGGATGGCAAGAA
GGTGAACACTGGATGTAATAGTTCTTTCCAAATCAACTCACCGAGGGGGG
AGTTGGGGGGGGGGGGGGGGGGTTTTTTTTTTTCCTTTTCATGGGGGAGT
GTTTGCTTTGGGGTTCCTTTTTTTGGGCGGGGGGGGCCCTCGGCGGACGC
GGGGCNNNNNNNNNNGGGGGGGAGGGGAGGGGGGGGGGGGGGGGGGGGGG
GGGAGGGGGGAGTTGGGGGGGGGGGGGGGGGGTTTTTTTTTTTCCTTTTC
ATGGGGGAGTGTTTGCTTTGGGGTTCCTTTTTTTGGGCGGGGGGGGCCCT
CGGCGGACGCGGGGCNNNNNNNNNNGGGGGGGAGGGGAGGGGGGGGGGGG
GGGGGGGGGGGGGGTGATTTGGACTACGGCGCGGATCGCTTCGCGAGCGT
TGTTGACTACGACCACGGTGGCGTCCCACCCAACACCGACGGCGTCGAGG
GCGACGCTGCTGATGGGGGTGAAAGCAGCCTCAGGGACCGAGGAAGGAAA
ACGGCCGAGGCACCGGCGACCTCTCCTTTTGGCGGGGAAGAGTTCTGCGG
GGACCTGCTCGACCAGAATTCGGCCTTGCATCCCGACCACGATATCATTT
CTTTTGGGGCTCAGGACCACTTCGGCGCGTATATCCCCGGCCTCGGTCGG
GGGCGAAGGCGGGGAGAGGGTGACAAGAGCTGGCGATCGGTTTACGCCGA
CATCGTAATGCCATATGGCGATCCGCACGGGGAGGGGGAGCAGGGCATAA
TGTCGATCCCGGTGAAAATAAGCGTGGGGCATGAGGATGAAAAGAACGAT
GACGACGACGACGACGATGGTGATTTGGACTACGGCGCGGATCGCTTCGC
GAGCGTTGTTGACTACGACCACGGTGGCGTCCCACCCAACACCGACGGCG
TCGAGGGCGACGCTGCTGATGGGGGTGAAAGCAGCCTCAGGGACCGAGGA
AGGAAAACGGCCGAGGCACCGGCGACCTCTCCTTTTGGCGGGGAAGAGTT
CTGCGGGGACCTGCTCGACCAGAATTCGGCCTTGCATCCCGACCACGATA
TCATTTCTTTTGGGGCTCAGGACCACTTCGGCGCGTATATCCCCGGCCTC
GGTCGGGGGCGAAGGCGGGGAGAGGGTGACAAGAGCTGGCGATCGGTTTA
CGCCGACATCGTAATGCCATATGGCGATCCGCACGGGGAGGGGGAGCAGG
GCATAATGTCGATCCCGGTGAAAATAAGCGTGGGGCATGAGGATGAAAAG
AACGATGACGACGACGACGACGAT
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