mRNA_H-elongata_contig52030.12487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52030.12487.1
Unique NamemRNA_H-elongata_contig52030.12487.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Match: A0A6H5JV33_9PHAE (SURF1-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV33_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.370e-13
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   13 VGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLPEGPQG 138
            VGATACLGTWQAMRY+WKL+L+E+  AKM  EPVDLPEG +G
Sbjct:   95 VGATACLGTWQAMRYSWKLDLIESRRAKMELEPVDLPEGLEG 136
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BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Match: D7G7I7_ECTSI (SURF1-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.710e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   13 VGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLPEGPQG 138
            VGATACLGTWQAMRY+WKL+L+E+  A+M  EPVDLPEG +G
Sbjct:   95 VGATACLGTWQAMRYSWKLDLIESRKARMEFEPVDLPEGLEG 136
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BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Match: A0A835ZFZ9_9STRA (SURF1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.150e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   13 VGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLP 123
            VG+T  LGTWQA RY WK++L+E S  +++SEP DLP
Sbjct:   53 VGSTVGLGTWQAFRYQWKVDLVEQSQKQLSSEPTDLP 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52030.12487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JV33_9PHAE1.370e-1376.19SURF1-like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7G7I7_ECTSI3.710e-1373.81SURF1-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835ZFZ9_9STRA5.150e-759.46SURF1-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52030contigH-elongata_contig52030:87..227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue8.3e-11
Seed eggNOG ortholog2880.D7G7I7
Preferred nameSURF1
KEGG koko:K14724,ko:K14998
KEGG TC2.A.36.1.12,2.A.36.1.9,3.D.4.8
GOsGO:0002164,GO:0002165,GO:0002168,GO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0007005,GO:0007275,GO:0007610,GO:0007632,GO:0008150,GO:0008152,GO:0008324,GO:0008535,GO:0009055,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009791,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0017004,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022857,GO:0022890,GO:0022900,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0033108,GO:0033617,GO:0034220,GO:0034622,GO:0034641,GO:0034654,GO:0040011,GO:0042330,GO:0042331,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0048856,GO:0050896,GO:0051082,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.Probably involved in the biogenesis of the COX complex
EggNOG OGsCOG3346@1,KOG1563@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.755363-CDS-H-elongata_contig52030:86..2271622930850.755363-CDS-H-elongata_contig52030:86..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52030 87..227 -
1691679597.3056586-CDS-H-elongata_contig52030:86..2271691679597.3056586-CDS-H-elongata_contig52030:86..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52030 87..227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52030.12487.1prot_H-elongata_contig52030.12487.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52030 87..227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52030.12487.1

>prot_H-elongata_contig52030.12487.1 ID=prot_H-elongata_contig52030.12487.1|Name=mRNA_H-elongata_contig52030.12487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MYFQVGATACLGTWQAMRYTWKLELMETSNAKMASEPVDLPEGPQG*
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mRNA from alignment at H-elongata_contig52030:87..227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52030.12487.1 ID=mRNA_H-elongata_contig52030.12487.1|Name=mRNA_H-elongata_contig52030.12487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig52030:87..227- (Himanthalia elongata Himel1 dioecious)
ATGTACTTTCAGGTGGGCGCTACGGCCTGCCTTGGGACCTGGCAAGCGAT
GCGTTACACGTGGAAACTAGAGCTGATGGAGACCAGCAACGCGAAGATGG
CCTCGGAGCCCGTCGACTTGCCGGAGGGCCCCCAGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig52030:87..227-

>mRNA_H-elongata_contig52030.12487.1 ID=mRNA_H-elongata_contig52030.12487.1|Name=mRNA_H-elongata_contig52030.12487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig52030:87..227- (Himanthalia elongata Himel1 dioecious)
ATGTACTTTCAGGTGGGCGCTACGGCCTGCCTTGGGACCTGGCAAGCGAT
GCGTTACACGTGGAAACTAGAGCTGATGGAGACCAGCAACGCGAAGATGG
CCTCGGAGCCCGTCGACTTGCCGGAGGGCCCCCAGGGGTGAATGTACTTT
CAGGTGGGCGCTACGGCCTGCCTTGGGACCTGGCAAGCGATGCGTTACAC
GTGGAAACTAGAGCTGATGGAGACCAGCAACGCGAAGATGGCCTCGGAGC
CCGTCGACTTGCCGGAGGGCCCCCAGGGGTGA
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