prot_H-elongata_contig5199.12480.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig5199.12480.1
Unique Name	prot_H-elongata_contig5199.12480.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	311

Homology

[Close]

BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot
Match: D8LFC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFC2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 9.400e-68
Identity = 145/293 (49.49%), Postives = 191/293 (65.19%), Query Frame = 0

Query:    1 MVDAEEFSRNENVFKQVALQEAEERHLRDEEFAKLRREWLEQMKLKAYKKQNDKEENRSGVNCDACGTSSLQKMVGEDPDKAARTLRQRQQMLAWLEQHSRELRNRKESEEADMASYWAYLQRVNDKQAELSEEDQAARKTLNFTIKEENRRMAAERAENMARWKEKEEEANAEELRFGERFLXXXXXXXXXXXSSCRGFKERFTRKQKAEL---LQSNVDMCAESLRKAEREREDEAEWYLHQASREKTRAAMEQRDLQEHRQAKDAEVKLLRQLQEQELQTQERDLRARNS 290
            M   EEF RNENV+K VA QEAEER LRD+E  ++R EWLEQMK K  K+Q +K+   +GV+ D CG S++Q M GEDPD+ +RT +Q+ QM AW  Q + E   R++  + +MA YWAYL+RV+ +Q ELSEE++AARKTL   IK+ENRR A ERAE MAR K+ E++ANA+ELR+    L           SS     +  +RKQKAEL    QSN DM A  LRKAE+ERE+EA W++ Q   EK R AMEQ D +E ++ K+ E +        +L  Q+R++R R S
Sbjct:   64 MASKEEFDRNENVYKHVAAQEAEERRLRDQELERMRLEWLEQMKFKYDKEQREKDMIHAGVDFDKCGLSAVQTMGGEDPDRLSRTAQQQAQMRAWSTQLANERLEREKLADQEMADYWAYLERVSQRQGELSEEEEAARKTLILQIKDENRRRALERAEEMARQKDLEDQANADELRYRNELLREDEGEG----SSTNNLFKGLSRKQKAELQQDTQSNADMRAARLRKAEQEREEEAAWFMQQ---EKMRVAMEQADREERQRVKELEEERXXXXXXXQLDLQQRNMRERCS 349

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot

BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LFC2_ECTSI	9.400e-68	49.49	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	COILS	Coil	Coil	coord: 210..230
None	No IPR available	COILS	Coil	Coil	coord: 256..279
None	No IPR available	PANTHER	PTHR14517:SF6		coord: 4..310
IPR008805	RIB43A	PFAM	PF05914	RIB43A	coord: 15..285 e-value: 3.7E-15 score: 55.6
IPR008805	RIB43A	PANTHER	PTHR14517	RIB43A-RELATED	coord: 4..310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig5199	contig	H-elongata_contig5199:1266..6207 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig5199.12480.1	mRNA_H-elongata_contig5199.12480.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig5199 1266..6210 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig5199.12480.1 ID=prot_H-elongata_contig5199.12480.1|Name=mRNA_H-elongata_contig5199.12480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=311bp
MVDAEEFSRNENVFKQVALQEAEERHLRDEEFAKLRREWLEQMKLKAYKK
QNDKEENRSGVNCDACGTSSLQKMVGEDPDKAARTLRQRQQMLAWLEQHS
RELRNRKESEEADMASYWAYLQRVNDKQAELSEEDQAARKTLNFTIKEEN
RRMAAERAENMARWKEKEEEANAEELRFGERFLREKEEDEEGNASSCRGF
KERFTRKQKAELLQSNVDMCAESLRKAEREREDEAEWYLHQASREKTRAA
MEQRDLQEHRQAKDAEVKLLRQLQEQELQTQERDLRARNSRFGEIDYTRG
IYAGFGKSCR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008805	RIB43A