mRNA_H-elongata_contig5199.12480.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot
Match: D8LFC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFC2_ECTSI) HSP 1 Score: 225 bits (574), Expect = 3.450e-68 Identity = 145/294 (49.32%), Postives = 192/294 (65.31%), Query Frame = 1
Query: 1 KMVDAEEFSRNENVFKQVALQEAEERHLRDEEFAKLRREWLEQMKLKAYKKQNDKEENRSGVNCDACGTSSLQKMVGEDPDKAARTLRQRQQMLAWLEQHSRELRNRKESEEADMASYWAYLQRVNDKQAELSEEDQAARKTLNFTIKEENRRMAAERAENMARWKEKEEEANAEELRFGERFLXXXXXXXXXXXSSCRGFKERFTRKQKAEL---LQSNVDMCAESLRKAEREREDEAEWYLHQASREKTRAAMEQRDLQEHRQAKDAEVKLLRQLQEQELQTQERDLRARNS 873
+M EEF RNENV+K VA QEAEER LRD+E ++R EWLEQMK K K+Q +K+ +GV+ D CG S++Q M GEDPD+ +RT +Q+ QM AW Q + E R++ + +MA YWAYL+RV+ +Q ELSEE++AARKTL IK+ENRR A ERAE MAR K+ E++ANA+ELR+ L SS + +RKQKAEL QSN DM A LRKAE+ERE+EA W++ Q EK R AMEQ D +E ++ K+ E + +L Q+R++R R S
Sbjct: 63 RMASKEEFDRNENVYKHVAAQEAEERRLRDQELERMRLEWLEQMKFKYDKEQREKDMIHAGVDFDKCGLSAVQTMGGEDPDRLSRTAQQQAQMRAWSTQLANERLEREKLADQEMADYWAYLERVSQRQGELSEEEEAARKTLILQIKDENRRRALERAEEMARQKDLEDQANADELRYRNELLREDEGEG----SSTNNLFKGLSRKQKAELQQDTQSNADMRAARLRKAEQEREEEAAWFMQQ---EKMRVAMEQADREERQRVKELEEERXXXXXXXQLDLQQRNMRERCS 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5199.12480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5199.12480.1 >prot_H-elongata_contig5199.12480.1 ID=prot_H-elongata_contig5199.12480.1|Name=mRNA_H-elongata_contig5199.12480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=311bp MVDAEEFSRNENVFKQVALQEAEERHLRDEEFAKLRREWLEQMKLKAYKKback to top mRNA from alignment at H-elongata_contig5199:1266..6210- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5199.12480.1 ID=mRNA_H-elongata_contig5199.12480.1|Name=mRNA_H-elongata_contig5199.12480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4945bp|location=Sequence derived from alignment at H-elongata_contig5199:1266..6210- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5199:1266..6210- >mRNA_H-elongata_contig5199.12480.1 ID=mRNA_H-elongata_contig5199.12480.1|Name=mRNA_H-elongata_contig5199.12480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1866bp|location=Sequence derived from alignment at H-elongata_contig5199:1266..6210- (Himanthalia elongata Himel1 dioecious)back to top |