mRNA_H-elongata_contig115768.1248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115768.1248.1
Unique NamemRNA_H-elongata_contig115768.1248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A7S3GWQ3_9STRA (Diphthine--ammonia ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWQ3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.190e-24
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            MKFVAL+SGGKDSCFN ++CV HGHEL+CL NL P   A+  GE    E DSFMYQ+AGHTAI   +ECF  PL+R+
Sbjct:    1 MKFVALLSGGKDSCFNVIKCVEHGHELICLANLSPP--ASFDGE----EMDSFMYQTAGHTAISKLSECFEVPLIRK 71          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A875RUR1_EENNA (Diphthine--ammonia ligase n=1 Tax=Eeniella nana TaxID=13502 RepID=A0A875RUR1_EENNA)

HSP 1 Score: 95.5 bits (236), Expect = 3.290e-21
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPL 222
            MKFVAL+SGGKDSCFN + C+ +GHEL+CL NLYP  +        SDE DSFMYQ+ G+ A++  AEC GKPL
Sbjct:    1 MKFVALVSGGKDSCFNILHCLANGHELICLANLYPPPSG-------SDEIDSFMYQTVGYDALKYYAECIGKPL 67          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A2P2KEG6_RHIMU (Diphthine--ammonia ligase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KEG6_RHIMU)

HSP 1 Score: 87.0 bits (214), Expect = 7.460e-21
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            MK VAL+SGGKDSC+  M+CVR+GHE+V L NL PA       +   DE DS+MYQ+ GH  I   AEC G PL RR
Sbjct:    1 MKVVALVSGGKDSCYAMMKCVRYGHEIVALANLMPA-------DDLVDELDSYMYQTVGHQIIVGYAECMGLPLFRR 70          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A099P2T0_PICKU (Diphthine--ammonia ligase n=4 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P2T0_PICKU)

HSP 1 Score: 93.2 bits (230), Expect = 2.150e-20
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVR 228
            MKFVAL+SGGKDSCFN + C+  GHELVCL NLYPA       E  +DE DS+MYQ+ GH  +    +C GKP+ R
Sbjct:    1 MKFVALVSGGKDSCFNILHCLAQGHELVCLANLYPA-------EPDNDEIDSYMYQTVGHDVLTLYEKCTGKPMYR 69          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A1E4T9X7_9ASCO (Diphthine--ammonia ligase (Fragment) n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4T9X7_9ASCO)

HSP 1 Score: 92.4 bits (228), Expect = 2.560e-20
Identity = 46/77 (59.74%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            MKFVALISGGKDSC+N MECVR GHELV + NL+P            DE +S+MYQ+ GH AI   AECF  PL RR
Sbjct:    3 MKFVALISGGKDSCYNVMECVRLGHELVAIANLHPPVG---------DELNSYMYQTVGHDAIPYLAECFDVPLYRR 70          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: UPI001F049302 (diphthine--ammonia ligase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F049302)

HSP 1 Score: 89.7 bits (221), Expect = 3.590e-20
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            M+ VALISGGKDSCFN ++CV+HGHE+V L NL P  +         DE DS+MYQ+ GH AIE  +E  G PL RR
Sbjct:    1 MRVVALISGGKDSCFNMLQCVKHGHEIVALANLRPPPS--------KDELDSYMYQTVGHNAIELYSEAMGVPLFRR 69          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A0N4UMS2_DRAME (Diphthine--ammonia ligase n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UMS2_DRAME)

HSP 1 Score: 89.4 bits (220), Expect = 4.440e-20
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            MK VALISGGKDSCFN M+CV +GH++VCL NLYP+           DE DS+MYQ+ GH A+E   E    PL+RR
Sbjct:    1 MKVVALISGGKDSCFNMMKCVDNGHKVVCLANLYPSEG---------DELDSYMYQTVGHNAVELYGEACDLPLLRR 68          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A4T0WVC9_9ASCO (Diphthine--ammonia ligase n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0WVC9_9ASCO)

HSP 1 Score: 92.0 bits (227), Expect = 5.500e-20
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVR 228
            MKFVAL+SGGKDSCFN + C+  GHEL+CL NLYP +      E  +DE DS+MYQ+ GH  +     C GKP+ R
Sbjct:    1 MKFVALVSGGKDSCFNILHCLVEGHELICLANLYPES------EEGNDEIDSYMYQTVGHDVLTLYERCIGKPMYR 70          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A4X2KMR4_VOMUR (Diphthine--ammonia ligase n=6 Tax=Metatheria TaxID=9263 RepID=A0A4X2KMR4_VOMUR)

HSP 1 Score: 87.0 bits (214), Expect = 6.790e-20
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            M+  ALISGGKDSC+N M+CV  GH++V L NL PA       +V SDE DS+MYQ+ GH AIE  AE  G PL R+
Sbjct:    1 MRVAALISGGKDSCYNMMQCVAAGHQIVALANLRPAK-----NQVGSDELDSYMYQTVGHQAIELFAEAMGLPLYRQ 72          
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Match: A0A1E4T8X0_9ASCO (Diphthine--ammonia ligase (Fragment) n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T8X0_9ASCO)

HSP 1 Score: 91.7 bits (226), Expect = 7.110e-20
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDETDSFMYQSAGHTAIEAQAECFGKPLVRR 231
            MKFVAL+SGGKDSCFN + C  +GHEL+CL NLYP  +        SDE DSFMYQ+ GH  +    +C GKP+ R+
Sbjct:    1 MKFVALVSGGKDSCFNILHCQANGHELICLANLYPPPSD-------SDELDSFMYQTVGHDILAYYEQCIGKPMYRQ 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115768.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3GWQ3_9STRA2.190e-2463.64Diphthine--ammonia ligase n=1 Tax=Spumella elongat... [more]
A0A875RUR1_EENNA3.290e-2159.46Diphthine--ammonia ligase n=1 Tax=Eeniella nana Ta... [more]
A0A2P2KEG6_RHIMU7.460e-2155.84Diphthine--ammonia ligase n=1 Tax=Rhizophora mucro... [more]
A0A099P2T0_PICKU2.150e-2056.58Diphthine--ammonia ligase n=4 Tax=Pichia kudriavze... [more]
A0A1E4T9X7_9ASCO2.560e-2059.74Diphthine--ammonia ligase (Fragment) n=1 Tax=Torti... [more]
UPI001F0493023.590e-2055.84diphthine--ammonia ligase-like n=1 Tax=Xenia sp. C... [more]
A0A0N4UMS2_DRAME4.440e-2055.84Diphthine--ammonia ligase n=1 Tax=Dracunculus medi... [more]
A0A4T0WVC9_9ASCO5.500e-2053.95Diphthine--ammonia ligase n=1 Tax=[Candida] incons... [more]
A0A4X2KMR4_VOMUR6.790e-2055.84Diphthine--ammonia ligase n=6 Tax=Metatheria TaxID... [more]
A0A1E4T8X0_9ASCO7.110e-2054.55Diphthine--ammonia ligase (Fragment) n=1 Tax=[Cand... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115768contigH-elongata_contig115768:540..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score94.4
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog4909.A0A099P2T0
KEGG rclassRC00358
KEGG koko:K06927
KEGG ReactionR03613
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016874,GO:0016879,GO:0016880,GO:0017178,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765
EggNOG free text desc.Saccharomyces cerevisiae YLR143w
EggNOG OGs38B78@33154,3NVBK@4751,3QKGQ@4890,3RR0Y@4891,COG0251@1,COG2102@1,KOG2316@2759,KOG2317@2759
EC6.3.1.14
COG Functional cat.J
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRossmann-like alpha/beta/alpha sandwich fold
Ec32 orthologEc-05_005040.1
Exons2
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.6368058-CDS-H-elongata_contig115768:539..7161622929671.6368058-CDS-H-elongata_contig115768:539..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115768 540..716 -
1691679113.8022294-CDS-H-elongata_contig115768:539..7161691679113.8022294-CDS-H-elongata_contig115768:539..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115768 540..716 -
1622929671.654044-CDS-H-elongata_contig115768:1136..11931622929671.654044-CDS-H-elongata_contig115768:1136..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115768 1137..1193 -
1691679113.813897-CDS-H-elongata_contig115768:1136..11931691679113.813897-CDS-H-elongata_contig115768:1136..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115768 1137..1193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115768.1248.1prot_H-elongata_contig115768.1248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115768 540..1193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115768.1248.1

>prot_H-elongata_contig115768.1248.1 ID=prot_H-elongata_contig115768.1248.1|Name=mRNA_H-elongata_contig115768.1248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MKFVALISGGKDSCFNTMECVRHGHELVCLGNLYPATAAASAGEVASDET
DSFMYQSAGHTAIEAQAECFGKPLVRR*
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mRNA from alignment at H-elongata_contig115768:540..1193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115768.1248.1 ID=mRNA_H-elongata_contig115768.1248.1|Name=mRNA_H-elongata_contig115768.1248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig115768:540..1193- (Himanthalia elongata Himel1 dioecious)
ATGAAGTTTGTTGCCCTCATCAGCGGAGGTAAAGACAGCTGCTTCAATAC CATGGAGGTGAACACGTCTTCTATTGAAGAGCTTTGGCGGGACTGTCATG CATCCACTACGCCCGCCCCCGCGCTGTAAAGCACGTCTCTGTTCCTCGTT AGGAGCCTGCTTGGCCGTAATCAAACTCACTAAACTATGTGTGAGAAAGC TTTGGATAGATCTGAACTGATTGTACGGTAGTTTCCTAGTTTTCCGACAC CCCCTACTGACTGTTACCTATATTTATTTAAGTGATTCCTCCGAGCAACG CTAATTATATTACAGATACAGGAAGTTGTTTTGTCACTCTCTCCTCATCG ATTTATCTTGCATGCATCCTGTCATATCCTATACCATACATCATCCGCGT CCGTCTCTTCGTGCGGGGTACTCTCTTCGCCCGTATTCCGAACCGAACGC GCTCCGGGCCGCCTCGCCAAAATTAAGTGTGTCCGCCACGGACATGAGCT CGTCTGCCTCGGAAACCTCTATCCCGCAACGGCAGCGGCGTCGGCGGGAG AAGTCGCATCGGACGAGACGGACAGCTTCATGTACCAGTCGGCGGGGCAC ACGGCCATCGAGGCGCAGGCGGAGTGCTTCGGCAAGCCGCTCGTTCGACG GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig115768:540..1193-

>mRNA_H-elongata_contig115768.1248.1 ID=mRNA_H-elongata_contig115768.1248.1|Name=mRNA_H-elongata_contig115768.1248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig115768:540..1193- (Himanthalia elongata Himel1 dioecious)
ATGAAGTTTGTTGCCCTCATCAGCGGAGGTAAAGACAGCTGCTTCAATAC
CATGGAGATGAAGTTTGTTGCCCTCATCAGCGGAGGTAAAGACAGCTGCT
TCAATACCATGGAGTGTGTCCGCCACGGACATGAGCTCGTCTGCCTCGGA
AACCTCTATCCCGCAACGGCAGCGGCGTCGGCGGGAGAAGTCGCATCGGA
CGAGACGGACAGCTTCATGTACCAGTCGGCGGGGCACACGGCCATCGAGG
CGCAGGCGGAGTGCTTCGGCAAGCCGCTCGTTCGACGGTAATGTGTCCGC
CACGGACATGAGCTCGTCTGCCTCGGAAACCTCTATCCCGCAACGGCAGC
GGCGTCGGCGGGAGAAGTCGCATCGGACGAGACGGACAGCTTCATGTACC
AGTCGGCGGGGCACACGGCCATCGAGGCGCAGGCGGAGTGCTTCGGCAAG
CCGCTCGTTCGACGGTAA
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