mRNA_H-elongata_contig51927.12475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51927.12475.1
Unique NamemRNA_H-elongata_contig51927.12475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: D7FN44_ECTSI (Outer row dynein assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN44_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.590e-51
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    1 TLDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAAGGLSRAQEAEREEMGRIRDAKREAEERQYTAFENV 336
            TLD+QHNRINDP+VV +VSAMHDLRVLYL+GNPVVK I HYRKT+VSKC  LKYLDDRPVF +ER RC AWS+GMA GG+SRAQEAEREEM +IR++KR AE+RQY AFE +
Sbjct:   90 TLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKSIRHYRKTLVSKCATLKYLDDRPVFDDERCRCAAWSKGMAEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQM 201          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: A0A7S3Y6C6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6C6_HETAK)

HSP 1 Score: 133 bits (335), Expect = 1.390e-35
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 TLDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAAGG-LSRAQEAEREEMGRIRDAKREAEERQYTAFENV 336
            TLD+QHN+I+D  +V VV+ M +LRVLYL+GNPVVK + HYRK++VS C  L+YLDDRPVF +ERRR +AW+RG  AGG L  A  AEREE+ R+R+ KR AEER + A E +
Sbjct:  149 TLDIQHNKIDDVGIVDVVTTMPNLRVLYLQGNPVVKDVRHYRKSLVSGCRELRYLDDRPVFEDERRRTDAWARGFRAGGTLDAANAAEREEIRRVREEKRCAEERNFLAMEQM 261          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: A0A8K1CJQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJQ4_PYTOL)

HSP 1 Score: 126 bits (317), Expect = 4.370e-32
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAA--GGLSRAQEAEREEMGRIRDAKREAEERQYTAFENVCCQPR 351
            LD+Q NRINDP+++++++ M  L+VLYL+GN VVKHI  YRKT++ +C  LKYLDDRPVF EERRR EAW + + A  G    AQEAEREEM RIR  KR+ + + +  FE +  + R
Sbjct:  141 LDIQSNRINDPKILEILAEMPSLKVLYLQGNDVVKHIKQYRKTMIYRCRKLKYLDDRPVFDEERRRVEAWGQALEAANGDYKAAQEAEREEMDRIRQEKRDRDHQNFLMFEEMMAEGR 258          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: T0QTZ5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QTZ5_SAPDV)

HSP 1 Score: 119 bits (297), Expect = 1.370e-29
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAA--GGLSRAQEAEREEMGRIRDAKREAEERQYTAFENV 336
            LD+Q NRI D +VV +++AM +LRVLYL+GN VVKHI HYRKTI+S+C  L+YLDDRPVF EERRR  AW R M    G +  A EAER E+  IR  K++ +E  +  FE++
Sbjct:  141 LDIQSNRIADVDVVDILAAMPNLRVLYLQGNDVVKHIKHYRKTIISRCKELRYLDDRPVFDEERRRVTAWGRVMEETNGDVDAALEAERAELALIRQEKKDKDEANFRYFEDM 253          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: K3WU80_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WU80_GLOUD)

HSP 1 Score: 116 bits (291), Expect = 4.880e-29
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAA--GGLSRAQEAEREEMGRIRDAKREAEERQYTAFENVCCQPR 351
            LD+Q NR+ D  +V +++ M +L+VLYL+GN VVKHI  YRKT+V +C  LKYLDDRPVF +ERRR EAW + + A  G    AQEAER+EM  IR  K+E +E  +  FE +  + R
Sbjct:  141 LDIQSNRVTDVNIVDILAQMPELKVLYLQGNDVVKHIKQYRKTLVYRCRKLKYLDDRPVFDDERRRVEAWGKALDASQGDYKAAQEAERDEMDAIRREKKERDELNFLHFEQMMIEGR 258          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: A0A7S0K1K9_CAFRO (Hypothetical protein (Fragment) n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K1K9_CAFRO)

HSP 1 Score: 115 bits (288), Expect = 5.690e-29
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAAGGLSRAQEAEREEMGRIRDAKREAEERQYTAFE 330
            LDL+ N I+DP V+ V++AM  LRVLYL+GNPVVK I HYRKT++S+   L++LDDRPVF EER R  AW+ GM AGG   A   ER  +   +   REA+ER + AFE
Sbjct:  144 LDLKGNIIDDPAVLDVLAAMPSLRVLYLQGNPVVKRIRHYRKTVISRLEGLRFLDDRPVFDEERERVTAWAAGMKAGGSKEAAARERATIAAQKQRAREADERNFRAFE 252          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: A0A3L6V2M5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V2M5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.940e-29
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGM--AAGGLSRAQEAEREEMGRIRDAKREAEERQYTAFENV 336
            LD+Q NRI DP VV V++ M +LRVLYL+GN VVKHI  YRKT+V++C NL+YLDDRPVF +ERRR  AW + +    G +  A +AER+E+  IR  K++ +E  +  FE +
Sbjct:  138 LDIQSNRIADPAVVDVLAQMPNLRVLYLQGNDVVKHIKQYRKTVVARCKNLRYLDDRPVFDDERRRVNAWYKVLENTNGDMDAALQAERDELAVIRQEKKDKDEANFRYFEEI 250          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: F0YSA6_AURAN (Uncharacterized protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSA6_AURAN)

HSP 1 Score: 112 bits (280), Expect = 1.470e-28
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 TLDLQHNRINDPE-VVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAAGG-LSRAQEAEREEMGRIRDAKREAEERQYTAFENVCCQPR 351
            TLD+Q N + D E V+ +   M DLRVLY +GNP VK + +YRK ++S+   L+YLDDRPVF +ERRRCEAW+RG A GG L  A EAER E+ +IR  K+ AE+++   FEN     R
Sbjct:   57 TLDVQANGLADGEGVLAIFKQMPDLRVLYCQGNPFVKELRNYRKRMISEIKTLRYLDDRPVFEDERRRCEAWARGFAEGGTLDAANEAERAEIAQIRADKKAAEDKRVRDFENFIADAR 175          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: A0A1V9YZD4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZD4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.900e-28
Identity = 63/113 (55.75%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAA--GGLSRAQEAEREEMGRIRDAKREAEERQYTAFENV 336
            LD+Q NRIND  VV V++ M +LRVLYL+GN VVKHI  YRKTI+ +C  L+YLDDRPVF EERRR  AW R M    G L  A EAER E+  IR  K++ +E  +  FE +
Sbjct:  141 LDIQSNRINDATVVDVLAQMTNLRVLYLQGNDVVKHIKQYRKTIIYRCKELRYLDDRPVFDEERRRVTAWGRAMEETNGDLEAALEAERAELAVIRQEKKDKDEANFRYFEEM 253          
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Match: A0A812VQF0_9DINO (DNAAF1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VQF0_9DINO)

HSP 1 Score: 115 bits (288), Expect = 2.410e-28
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    4 LDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCTNLKYLDDRPVFYEERRRCEAWSRGMAAGGLSRAQEAEREEMGRIRDAKREAEERQYTAFE 330
            LDL+ N I+DP V+ V++AM  LRVLYL+GNPVVK I HYRKT++S+   L++LDDRPVF EER R  AW+ GM AGG   A   ER  +   +   REA+ER + AFE
Sbjct:  208 LDLKGNIIDDPAVLDVLAAMPSLRVLYLQGNPVVKRIRHYRKTVISRLEGLRFLDDRPVFDEERERVTAWAAGMKAGGSKEAAARERATIAAQKQRAREADERNFRAFE 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51927.12475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN44_ECTSI3.590e-5176.79Outer row dynein assembly protein n=1 Tax=Ectocarp... [more]
A0A7S3Y6C6_HETAK1.390e-3560.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1CJQ4_PYTOL4.370e-3254.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0QTZ5_SAPDV1.370e-2955.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
K3WU80_GLOUD4.880e-2951.69Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S0K1K9_CAFRO5.690e-2955.05Hypothetical protein (Fragment) n=2 Tax=Cafeteria ... [more]
A0A3L6V2M5_9STRA5.940e-2952.21Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
F0YSA6_AURAN1.470e-2852.10Uncharacterized protein (Fragment) n=2 Tax=Aureoco... [more]
A0A1V9YZD4_9STRA1.900e-2855.75Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A812VQF0_9DINO2.410e-2855.05DNAAF1 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51927contigH-elongata_contig51927:1118..1641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue2e-42
Seed eggNOG ortholog2880.D7FN44
Preferred nameODA7
KEGG koko:K19750
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0040012,GO:0040017,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044464,GO:0044782,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051272,GO:0051641,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0120031,GO:0120036,GO:1902019,GO:2000145,GO:2000147,GO:2000155
EggNOG free text desc.dynein complex binding
EggNOG OGs2CMIN@1,2QQFE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionouter row dynein assembly protein
Ec32 orthologEc-06_008340.1
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930849.1899323-CDS-H-elongata_contig51927:1117..12951622930849.1899323-CDS-H-elongata_contig51927:1117..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51927 1118..1295 -
1691679596.6310208-CDS-H-elongata_contig51927:1117..12951691679596.6310208-CDS-H-elongata_contig51927:1117..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51927 1118..1295 -
1622930849.2157824-CDS-H-elongata_contig51927:1468..16411622930849.2157824-CDS-H-elongata_contig51927:1468..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51927 1469..1641 -
1691679596.642082-CDS-H-elongata_contig51927:1468..16411691679596.642082-CDS-H-elongata_contig51927:1468..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51927 1469..1641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51927.12475.1prot_H-elongata_contig51927.12475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51927 1118..1641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51927.12475.1

>prot_H-elongata_contig51927.12475.1 ID=prot_H-elongata_contig51927.12475.1|Name=mRNA_H-elongata_contig51927.12475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
TLDLQHNRINDPEVVKVVSAMHDLRVLYLKGNPVVKHIHHYRKTIVSKCT
NLKYLDDRPVFYEERRRCEAWSRGMAAGGLSRAQEAEREEMGRIRDAKRE
AEERQYTAFENVCCQPR
back to top

mRNA from alignment at H-elongata_contig51927:1118..1641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51927.12475.1 ID=mRNA_H-elongata_contig51927.12475.1|Name=mRNA_H-elongata_contig51927.12475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=524bp|location=Sequence derived from alignment at H-elongata_contig51927:1118..1641- (Himanthalia elongata Himel1 dioecious)
ACACTGGATTTGCAGCATAATCGAATCAACGATCCTGAGGTGGTGAAGGT GGTGTCAGCCATGCACGATCTTCGGGTTCTGTATCTCAAGGGCAATCCTG TGGTGAAACATATTCACCACTACCGCAAGACCATCGTGAGCAAGTGTACA AACCTCAAATACCTCGATGACAGGTACATATGAATCACGAGTTATGTTCT TGATATCACCCCCAAGTTCGACCATTGACATTCCTAAGCAAAACAAATCT ACCCCTACATGTAGATCGACGGGATCTCGCTCTCAAGCGGAGTGCTTACT GAACACAATTTTGCTAAACTTTATCTCCTCGATGGTACACTAACAGACCC GTTTTCTACGAAGAGCGCCGCCGATGTGAAGCATGGTCAAGGGGTATGGC CGCAGGAGGGCTATCACGCGCACAAGAAGCGGAAAGGGAAGAAATGGGGA GGATTCGAGACGCCAAGAGAGAAGCAGAAGAGCGTCAATACACGGCGTTC GAAAATGTATGTTGTCAACCTCGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51927:1118..1641-

>mRNA_H-elongata_contig51927.12475.1 ID=mRNA_H-elongata_contig51927.12475.1|Name=mRNA_H-elongata_contig51927.12475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig51927:1118..1641- (Himanthalia elongata Himel1 dioecious)
ACACTGGATTTGCAGCATAATCGAATCAACGATCCTGAGGTGGTGAAGGT
GGTGTCAGCCATGCACGATCTTCGGGTTCTGTATCTCAAGGGCAATCCTG
TGGTGAAACATATTCACCACTACCGCAAGACCATCGTGAGCAAGTGTACA
AACCTCAAATACCTCGATGACAGACACTGGATTTGCAGCATAATCGAATC
AACGATCCTGAGGTGGTGAAGGTGGTGTCAGCCATGCACGATCTTCGGGT
TCTGTATCTCAAGGGCAATCCTGTGGTGAAACATATTCACCACTACCGCA
AGACCATCGTGAGCAAGTGTACAAACCTCAAATACCTCGATGACAGACCC
GTTTTCTACGAAGAGCGCCGCCGATGTGAAGCATGGTCAAGGGGTATGGC
CGCAGGAGGGCTATCACGCGCACAAGAAGCGGAAAGGGAAGAAATGGGGA
GGATTCGAGACGCCAAGAGAGAAGCAGAAGAGCGTCAATACACGGCGTTC
GAAAATGTATGTTGTCAACCTCGAACCCGTTTTCTACGAAGAGCGCCGCC
GATGTGAAGCATGGTCAAGGGGTATGGCCGCAGGAGGGCTATCACGCGCA
CAAGAAGCGGAAAGGGAAGAAATGGGGAGGATTCGAGACGCCAAGAGAGA
AGCAGAAGAGCGTCAATACACGGCGTTCGAAAATGTATGTTGTCAACCTC
GA
back to top