mRNA_H-elongata_contig51835.12462.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: D7FSY2_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY2_ECTSI) HSP 1 Score: 249 bits (636), Expect = 4.090e-75 Identity = 119/189 (62.96%), Postives = 148/189 (78.31%), Query Frame = 3
Query: 3 IAEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
IAE+R NQV+FARLR K N G FC+GTYHMPCLF VMV+H S+ I++L++LA DPLVFAGDFNFNP SDCYKLA EG+L SS DFP RPEWEKDW+ +TGV L SAY++V G EP+FTNNA+V+ DPFIDTLDYIF T G+ A KVLPLK+R++V G P + EPSDH++LA+++++
Sbjct: 192 IAERRFNQVLFARLRPKTGAADLPNGGTFCIGTYHMPCLFNIRPVMVMHTSLAIRHLAKLAGPDPLVFAGDFNFNPDSDCYKLAVEGDLPESSGDFPVRPEWEKDWTPKTGVCLQSAYKQVDGKEPDFTNNAKVEDWDPFIDTLDYIFHTPGITAVKVLPLKHRSEVNGPFPVSEEPSDHVILAAEYKV 380
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A5B8MV46_9CHLO (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MV46_9CHLO) HSP 1 Score: 163 bits (412), Expect = 1.230e-42 Identity = 83/189 (43.92%), Postives = 114/189 (60.32%), Query Frame = 3
Query: 3 IAEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
+A R N +V +LR +G G N+ FCVGTYHMPC+F+ VMVIH ++ + + AK D + GDFNF P+ CY+L T+G+LS +P+ E+ W E SAY G+EPNFTN A++ D FIDTLDY+F + + VL L +R+DV G LP A EPSDH+M+ + FE+
Sbjct: 162 LARNRMNTMVLVKLRSRG----GGNS--FCVGTYHMPCMFWAPKVMVIHSALACQKVQDFAKDDHCILLGDFNFKPTDSCYELCTKGSLSEDDEFYPEATHPEESWKPEMEYGFESAYFRHNGEEPNFTNYAKIRDDPVFIDTLDYVFYSPSLKVVDVLDLPHRDDVKGPLPNAEEPSDHIMIGATFEL 344
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A7S1WZP0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WZP0_9CHLO) HSP 1 Score: 157 bits (397), Expect = 3.060e-40 Identity = 87/190 (45.79%), Postives = 113/190 (59.47%), Query Frame = 3
Query: 12 KRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSG----VIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
+R N +VF RLR + + VF V TYHMPC F+ MVIH ++ ++ S+LA +P V GDFN P YKL T+G L +D P EW+ DW V L SAY EV EP+FTN AQV ++ PFID LDYIF + G + A V PL R DV G LPT +EPSDH+++A++FE+
Sbjct: 183 RRFNSLVFLRLRCRA------TSSVFGVATYHMPCAFFLPPAMVIHCALASQHASRLAGENPFVLCGDFNIKPLDSTYKLLTQGELPADEADLPTPREWD-DWRPTVPVPLRSAYAEVNDAEPDFTNFAQVKEEPPFIDCLDYIFYSPGAEGLMKAVAVKPLPKREDVGGPLPTFSEPSDHILIAAEFEL 365
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A7R9TB80_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TB80_9VIRI) HSP 1 Score: 152 bits (383), Expect = 4.120e-40 Identity = 80/188 (42.55%), Postives = 119/188 (63.30%), Query Frame = 3
Query: 6 AEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDV-AGQLPTANEPSDHLMLASDFE 566
+ +R+N+ + RLR D+ R++ F V TYHMPC+F+++ M IH ++V ++ A PL AGDFN P Y L T+G+L +S +P +WE W + + SAY +V G EP+FTN A++ +D+PFIDTLDY+F +G+ AT LPL +R+DV A PT +EPSDH+++A+D E
Sbjct: 18 SRRRNNRAIGVRLR---DV---RSSSEFVVATYHMPCMFWDLKAMTIHSALVGQWAQGYADGAPLCLAGDFNIKPGDPAYDLLTQGDLDEASEGYPTPVDWEP-WRPKLQSKFDSAYLQVDGREPDFTNYAKIKEDEPFIDTLDYLFVGNGMRATAALPLAHRDDVDALSFPTDDEPSDHVLIAADME 198
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: L1JKQ1_GUITC (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKQ1_GUITC) HSP 1 Score: 151 bits (381), Expect = 7.620e-39 Identity = 80/190 (42.11%), Postives = 108/190 (56.84%), Query Frame = 3
Query: 3 IAEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKD-WSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
++ KR N +F RL YHMPC+F++ VMVIH ++ +++ L+ ADP VFAGDFN P S Y+L T G L S DFP P+ D W+ + R+ S Y G EP+FTN AQ+ +D PFI+T+DYIF G+ LPL R +V+G LP EPSDH+M+ +DF I
Sbjct: 112 VSRKRKNTCIFLRL-------------------YHMPCVFWDQRVMVIHSALAARHVQSLSGADPYVFAGDFNIQPQSAAYRLLTSGRLEASHPDFP--PDRAGDSWAPQLEERMESVYSSFHGSEPDFTNYAQIFEDPPFIETIDYIFCRPGMKVVGCLPLPRRQEVSGPLPNDQEPSDHIMIGADFNI 280
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A7S2EJP1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJP1_TRICV) HSP 1 Score: 142 bits (357), Expect = 8.010e-36 Identity = 82/191 (42.93%), Postives = 111/191 (58.12%), Query Frame = 3
Query: 3 IAEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAET-GVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVA-GQLPTANEPSDHLMLASDFEI 569
++E R N VV A LR +G + G FC+ YHMPC FY VM IH MV+++ +LA +DP + AGDFNF P S YKL T G L + +P + +W +W + G+R SAY E EP+FTN AQV+ D+PFI TLDY+F + V +R V G P NEPSDH+++A+D +
Sbjct: 28 MSENRFNVVVTACLRLRG-LDENDEGGTFCISNYHMPCAFYAPPVMNIHAEMVVRHCEKLAGSDPHILAGDFNFMPDSPHYKLITTGELWRNDPSYP-KKKWGMEWRSNIRGMR--SAYAESNHGEPDFTNYAQVEDDEPFIGTLDYVFLSDEWDVVGVRSTPHRRSVRDGPYPNENEPSDHIVIAADLTL 214
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A7S2BQ98_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQ98_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.970e-35 Identity = 82/191 (42.93%), Postives = 113/191 (59.16%), Query Frame = 3
Query: 3 IAEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSD--FPDRPEWEKDWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
++ +R N V+ A L + G ++ F V TYHMPCLF+ M +H S+++++ + +A+ DPLV GDFNF P S Y L + P+S PD P W T + SAY E QG EPNFTN A+V D FI+TLDYIF +S I KV+PL +R +V+G LPT EPSDHL++ + +I
Sbjct: 132 VSLRRPNMVIVANLLALNN--GGASSTPFSVCTYHMPCLFWAPKAMTVHTSLLLQFAACVARGDPLVVCGDFNFVPDSPFYNLVKTTTIDPASDACVIPD-PAISGRWQVATPRPMRSAYVEAQGVEPNFTNYARVQNDPTFIETLDYIFLSSDWIVKKVVPLPHRANVSGPLPTEFEPSDHLLIGATLKI 319
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A836CFS4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS4_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.550e-35 Identity = 82/192 (42.71%), Postives = 111/192 (57.81%), Query Frame = 3
Query: 6 AEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEK--DWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQ--LPTANEPSDHLMLASDFEI 569
A++R NQ+VF RLR V CV TYHMPC F +M IH ++ +++++LA+ D VFAGDFNF P S Y L T G L+ S +P P WE DW + L SAYREVQG EP TN + + + F LDY+F + T+V+PL++ + GQ PTA EPSDH+ML + F++
Sbjct: 236 AQRRHNQMVFVRLRXXXXXXXXXARPV-CVATYHMPCAFRVPPMMTIHAALAAQHVARLARGDAHVFAGDFNFTPDSPQYALVTRGALNSSDPAYPVPPPWEAPIDWQPQLAAPLRSAYREVQGREPELTNWSCIGDNGEFSGCLDYVFYGGELSPTEVIPLRDAAALRGQGPFPTAAEPSDHVMLGATFKL 426
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A7S0GD64_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD64_9STRA) HSP 1 Score: 140 bits (354), Expect = 5.100e-35 Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 3
Query: 3 IAEKRSNQVVFARLR-RKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAETGVR-LVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
+++ R N ++FARLR R P + FC+ TYHMPC F+ VM IH MV + +L+ DP V AGDFN P S Y L T+G LS S +P + DW + G++ + SAY + G EP+FTN AQ +DDPFIDTLDY F ++ +V + +R++ G P +EPSDH+++A++ EI
Sbjct: 87 MSQNRYNIMLFARLRERSPPNAPNPSPKTFCLSTYHMPCAFFAPMVMNIHAEMVAQRTQKLSGGDPHVLAGDFNIVPGSSTYNLITKGELSKSDPTYP-CSRYGVDWVS--GIQPMRSAYMVMDGKEPDFTNYAQTREDDPFIDTLDYFFLSNEWKVKEVTKIPHRDNANGPYPNEDEPSDHVLIATNLEI 274
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Match: A0A061RVG3_9CHLO (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RVG3_9CHLO) HSP 1 Score: 143 bits (360), Expect = 6.800e-35 Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 3
Query: 6 AEKRSNQVVFARLRRKGDIVPGRNNGVFCVGTYHMPCLFYNMHVMVIHLSMVIKYLSQLAKA--DPLVFAGDFNFNPSSDCYKLATEGNLSPSSSDFPDRPEWEKDWSAETGVRLVSAYREVQGDEPNFTNNAQVDQDDPFIDTLDYIFRTSGVIATKVLPLKNRNDVAGQLPTANEPSDHLMLASDFEI 569
+++R N +V RLR + ++ F TYHMPC ++ MVIH ++ ++ + LA+A +P V GDFN P Y+L TEG+L + P+ W+ W V L SAY+EV G+EP+FTN AQ DDPF+D LDYIF + AT V L R DV G LPT EPSDH++LA+ +
Sbjct: 182 SQRRFNMMVSVRLRCR------QSGCSFWFSTYHMPCAYFLPPAMVIHSALASQHAAALARANDEPFVLCGDFNIKPGEGSYRLLTEGSLEEDHPEAPEPRGWDS-WRPTVPVALKSAYKEVNGEEPDFTNFAQHRNDDPFVDCLDYIFYSPACRATAVRALPPRGDVQGPLPTPKEPSDHILLAATIRV 364 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51835.12462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51835.12462.1 >prot_H-elongata_contig51835.12462.1 ID=prot_H-elongata_contig51835.12462.1|Name=mRNA_H-elongata_contig51835.12462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp MPCLFYNMHVMVIHLSMVIKYLSQLAKADPLVFAGDFNFNPSSDCYKLATback to top mRNA from alignment at H-elongata_contig51835:708..3211- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51835.12462.1 ID=mRNA_H-elongata_contig51835.12462.1|Name=mRNA_H-elongata_contig51835.12462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2504bp|location=Sequence derived from alignment at H-elongata_contig51835:708..3211- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51835:708..3211- >mRNA_H-elongata_contig51835.12462.1 ID=mRNA_H-elongata_contig51835.12462.1|Name=mRNA_H-elongata_contig51835.12462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig51835:708..3211- (Himanthalia elongata Himel1 dioecious)back to top |