mRNA_H-elongata_contig51820.12460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51820.12460.1
Unique NamemRNA_H-elongata_contig51820.12460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: D8LFB1_ECTSI (Creatinase_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.300e-31
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQ 204
            ++S+LR  M   GVS YLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVT ++ALMWTDGRYFLQ
Sbjct:   35 KLSLLRAAMQARGVSAYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTHTKALMWTDGRYFLQ 102          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: A0A6H5KL17_9PHAE (Creatinase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL17_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.160e-29
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQ 204
            ++S+LR  M   GVS YLVETQDAH SEYVADHDKRREWLTGFTGSAGTALVT ++ALMWTDGRYFLQ
Sbjct:   35 KLSLLRAAMQARGVSAYLVETQDAHHSEYVADHDKRREWLTGFTGSAGTALVTHTKALMWTDGRYFLQ 102          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: UPI0018F28BF7 (aminopeptidase P family N-terminal domain-containing protein n=1 Tax=Petrotoga sp. 9PW.55.5.1 TaxID=1308979 RepID=UPI0018F28BF7)

HSP 1 Score: 99.8 bits (247), Expect = 2.210e-25
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSSCAPITYLRPPG 261
            R++ LRE M K G++ Y+V T D HQSEY+AD+ K R W++GFTGSAGT ++T+ EA++WTDGRYF+Q +   +SS   +  +  PG
Sbjct:    6 RINRLRELMQKMGITAYVVSTSDPHQSEYIADYYKTRVWISGFTGSAGTVVITQKEAILWTDGRYFIQAEKELESSGIKLYKIGIPG 92          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: A0A1I8HGG2_9PLAT (Uncharacterized protein n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HGG2_9PLAT)

HSP 1 Score: 101 bits (252), Expect = 2.580e-23
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   13 LRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSS 228
            LR+ M +H ++ YLV ++DAH SEYVAD DKRR  LTGFTGSAGTALVTESEALMWTDGRYFLQ +    S+
Sbjct:   12 LRQLMSRHQLNAYLVPSEDAHMSEYVADCDKRRAQLTGFTGSAGTALVTESEALMWTDGRYFLQAEQQMDSN 83          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: A0A7Y2MSL4_9BACT (Aminopeptidase P family protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2MSL4_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 2.050e-22
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSS 228
            R+++LR  M KHG+  Y++ T D HQSEYVADH K REW++GFTGSAGT ++T++ A +WTD RYF+Q +    SS
Sbjct:    6 RINLLRNEMRKHGLDAYIIPTNDPHQSEYVADHWKSREWISGFTGSAGTVVITQNHAGLWTDSRYFIQAEEELSSS 81          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: A0A4R3L0C5_9FIRM (Xaa-Pro aminopeptidase n=1 Tax=Keratinibaculum paraultunense TaxID=1278232 RepID=A0A4R3L0C5_9FIRM)

HSP 1 Score: 99.4 bits (246), Expect = 2.050e-22
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSSCAPITYLRPPG 261
            R++ LR+ M + G++ Y++ T D HQSEY+ADH K R W++GFTGSAGT +VTE EA++WTDGRYF+Q +   K S   +  +  PG
Sbjct:    6 RINNLRKLMKQRGITAYIIPTSDPHQSEYLADHYKTRVWISGFTGSAGTVVVTEDEAILWTDGRYFIQAEKELKDSGIKLYKIGIPG 92          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: A0A265Q4Q2_9FIRM (Peptidase M24 n=2 Tax=Tissierella TaxID=41273 RepID=A0A265Q4Q2_9FIRM)

HSP 1 Score: 98.2 bits (243), Expect = 5.250e-22
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSSCAPITYLRPPG 261
            RVS LR  M   G++ Y+V T D HQSEYVAD+ K R W++GFTGSAGT ++T+ EA++WTDGRYF+Q ++    S   +  +R PG
Sbjct:    6 RVSKLRHLMKDRGITAYIVNTADPHQSEYVADYYKGRVWISGFTGSAGTVVITQEEAILWTDGRYFIQAENELSGSEYKLFKMRIPG 92          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: UPI0019C31066 (Aminopeptidase P family protein n=1 Tax=Tissierellaceae bacterium BX21 TaxID=2763679 RepID=UPI0019C31066)

HSP 1 Score: 98.2 bits (243), Expect = 5.250e-22
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSSCAPITYLRPPG 261
            RV  LRE M + G+  Y+V T D HQSEYVAD+ K R W+TGFTGSAGTA++T+ EA++WTDGRYF+Q +     S   +  +  PG
Sbjct:    6 RVKKLRELMDEKGIVAYIVTTSDPHQSEYVADYYKDRAWITGFTGSAGTAVITQDEAILWTDGRYFIQAEKELTGSEYKLYKMNIPG 92          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: UPI00082EF31E (aminopeptidase P family protein n=1 Tax=Abyssisolibacter fermentans TaxID=1766203 RepID=UPI00082EF31E)

HSP 1 Score: 97.8 bits (242), Expect = 7.170e-22
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSSCAPITYLRPPG 261
            R++ L++ M    +  ++V + DAHQSEYVADH K REW+TGFTGSAGTA++T  E  +WTDGRYF+Q ++  K S   +  +R PG
Sbjct:    6 RIAKLKDLMKSRNIDAFIVPSYDAHQSEYVADHWKCREWITGFTGSAGTAVITLDECGLWTDGRYFIQAENELKGSGVKLFKMREPG 92          
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Match: A0A7S0RQ31_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RQ31_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 9.340e-22
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 RVSMLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVTESEALMWTDGRYFLQVKHTKKSSCAPITYLRPP 258
            ++++LR+ M + GV+ Y+V T D HQSEYVADH  RR++++ FTGSAGTA++T  +AL+WTDGRYF Q  +   + C  +   R P
Sbjct:   11 KLAVLRKLMMEQGVAAYVVPTDDPHQSEYVADHFARRQFISDFTGSAGTAVITTDKALLWTDGRYFTQANNQLDAGCWTLMKDRMP 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51820.12460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB1_ECTSI2.300e-3182.35Creatinase_N domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KL17_9PHAE2.160e-2980.88Creatinase_N domain-containing protein n=1 Tax=Ect... [more]
UPI0018F28BF72.210e-2550.57aminopeptidase P family N-terminal domain-containi... [more]
A0A1I8HGG2_9PLAT2.580e-2369.44Uncharacterized protein n=5 Tax=Macrostomum lignan... [more]
A0A7Y2MSL4_9BACT2.050e-2255.26Aminopeptidase P family protein n=1 Tax=Saprospira... [more]
A0A4R3L0C5_9FIRM2.050e-2250.57Xaa-Pro aminopeptidase n=1 Tax=Keratinibaculum par... [more]
A0A265Q4Q2_9FIRM5.250e-2251.72Peptidase M24 n=2 Tax=Tissierella TaxID=41273 RepI... [more]
UPI0019C310665.250e-2252.87Aminopeptidase P family protein n=1 Tax=Tissierell... [more]
UPI00082EF31E7.170e-2250.57aminopeptidase P family protein n=1 Tax=Abyssisoli... [more]
A0A7S0RQ31_9CHLO9.340e-2248.84Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51820contigH-elongata_contig51820:3677..3937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4e-24
Seed eggNOG ortholog2880.D8LFB1
EggNOG free text desc.Belongs to the peptidase M24B family
EggNOG OGsCOG0006@1,KOG2413@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004290.1
Exons1
Model size261
Cds size252
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.6462638-UTR-H-elongata_contig51820:3676..36851622930847.6462638-UTR-H-elongata_contig51820:3676..3685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51820 3677..3685 +
1691679596.036563-UTR-H-elongata_contig51820:3676..36851691679596.036563-UTR-H-elongata_contig51820:3676..3685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51820 3677..3685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.664312-CDS-H-elongata_contig51820:3685..39371622930847.664312-CDS-H-elongata_contig51820:3685..3937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51820 3686..3937 +
1691679596.0484622-CDS-H-elongata_contig51820:3685..39371691679596.0484622-CDS-H-elongata_contig51820:3685..3937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51820 3686..3937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51820.12460.1prot_H-elongata_contig51820.12460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51820 3686..3937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51820.12460.1

>prot_H-elongata_contig51820.12460.1 ID=prot_H-elongata_contig51820.12460.1|Name=mRNA_H-elongata_contig51820.12460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLRERMHKHGVSGYLVETQDAHQSEYVADHDKRREWLTGFTGSAGTALVT
ESEALMWTDGRYFLQVKHTKKSSCAPITYLRPPG
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mRNA from alignment at H-elongata_contig51820:3677..3937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51820.12460.1 ID=mRNA_H-elongata_contig51820.12460.1|Name=mRNA_H-elongata_contig51820.12460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig51820:3677..3937+ (Himanthalia elongata Himel1 dioecious)
CGCGTGTCTATGCTGAGGGAGAGAATGCACAAGCACGGGGTCTCTGGATA CCTGGTTGAGACGCAGGATGCCCACCAGAGTGAGTACGTGGCTGACCACG ATAAGAGGAGGGAGTGGCTAACTGGCTTTACAGGCTCGGCGGGTACGGCG CTGGTGACAGAGTCAGAGGCACTCATGTGGACAGACGGAAGATATTTCTT GCAGGTAAAACACACAAAAAAGAGCAGTTGTGCTCCAATTACATATCTCC GCCCTCCAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig51820:3677..3937+

>mRNA_H-elongata_contig51820.12460.1 ID=mRNA_H-elongata_contig51820.12460.1|Name=mRNA_H-elongata_contig51820.12460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig51820:3677..3937+ (Himanthalia elongata Himel1 dioecious)
ATGCTGAGGGAGAGAATGCACAAGCACGGGGTCTCTGGATACCTGGTTGA
GACGCAGGATGCCCACCAGAGTGAGTACGTGGCTGACCACGATAAGAGGA
GGGAGTGGCTAACTGGCTTTACAGGCTCGGCGGGTACGGCGCTGGTGACA
GAGTCAGAGGCACTCATGTGGACAGACGGAAGATATTTCTTGCAGGTAAA
ACACACAAAAAAGAGCAGTTGTGCTCCAATTACATATCTCCGCCCTCCAG
GCATGCTGAGGGAGAGAATGCACAAGCACGGGGTCTCTGGATACCTGGTT
GAGACGCAGGATGCCCACCAGAGTGAGTACGTGGCTGACCACGATAAGAG
GAGGGAGTGGCTAACTGGCTTTACAGGCTCGGCGGGTACGGCGCTGGTGA
CAGAGTCAGAGGCACTCATGTGGACAGACGGAAGATATTTCTTGCAGGTA
AAACACACAAAAAAGAGCAGTTGTGCTCCAATTACATATCTCCGCCCTCC
AGGC
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