prot_H-elongata_contig51803.12458.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51803.12458.1
Unique Nameprot_H-elongata_contig51803.12458.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length208
Homology
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.710e-113
Identity = 170/207 (82.13%), Postives = 185/207 (89.37%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQEDA 207
            MASI+KLSIRGIRSFSHER        Q+IEFY PLTMIVGANGCGKTTIIECLKYACTG+LPPGARNGQSFVHDPK S  +++KANIKLRF+ RD  + VVIRSFQLTQK+ TLQFKALDGVIRT++++G SVSI HKCTE+DKHIP RLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFES+RYTKALD IKKTKQE A
Sbjct:    1 MASIHKLSIRGIRSFSHER-------EQVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKVSGTNEVKANIKLRFSARDKTVGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYA 200          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: H3GA74_PHYRM (AAA_23 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA74_PHYRM)

HSP 1 Score: 264 bits (675), Expect = 7.130e-87
Identity = 129/204 (63.24%), Postives = 162/204 (79.41%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 204
            M+SI KLSIRGIRSFS  R        QIIEFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS +HDPK +  +++KA+I+LRF  R G+  VV R++Q+ Q K  L FKALDGVIR  ++ G  VS+ HKC ELD+HIP  LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFES+RYTKAL+ I+K K+
Sbjct:    1 MSSIEKLSIRGIRSFSPNR-------EQIIEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLIHDPKIAGTNEVKASIRLRFRNRAGKAMVVQRTYQVRQTKKNLVFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKK 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A1E7F3C8_9STRA (AAA_23 domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C8_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.750e-86
Identity = 131/205 (63.90%), Postives = 160/205 (78.05%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQE 205
            MASINKLS+RGIRSFS E A       Q++EFY PLT+IVG   CGKTTIIE LK+A  G+LPPG   GQ+FVHDPK+   + +KAN+KLRF    G+  V++RS ++TQKK T+ FK LDG +RT ++ G  ++++HKCTELD+ IP  LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S+RYTKALD   K K+E
Sbjct:    1 MASINKLSVRGIRSFSPEDA------EQVLEFYMPLTVIVGE--CGKTTIIEALKFAVCGALPPGKNAGQAFVHDPKSIGSTSVKANLKLRFTAHGGKSMVIVRSMEVTQKKTTMTFKQLDGNLRTVNNTGERIAMSHKCTELDRQIPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFSKAKKE 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A2P4XQ47_9STRA (DNA repair protein RAD50 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ47_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.150e-84
Identity = 127/204 (62.25%), Postives = 162/204 (79.41%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 204
            M+SI KLSIRGIRSFS  R        +I+EFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+G S +HDPK +  +++KA+I+LRF  R G+  VV R++Q+ Q K  LQFKALDGVIR  ++ G  VS+ HKC ELD+HIP  LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFES+RYTKAL+ I+K K+
Sbjct:    1 MSSIEKLSIRGIRSFSPNR-------EEILEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGHSLIHDPKIAGTNEVKASIRLRFRNRAGKAMVVNRTYQVRQTKKALQFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKK 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A835YS38_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS38_9STRA)

HSP 1 Score: 258 bits (658), Expect = 3.230e-84
Identity = 131/206 (63.59%), Postives = 160/206 (77.67%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITH-KCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQE 205
            M+ + KLSIRGIRSF  +         QIIEFY PLTMIVG+NGCGKTTIIECL+YA TG LPP +RNGQ+FVHDPK S  +++KA IKLR         VV+RS QLTQKK T+QFKALDGV++  +++G + S T  KCT+LDK +P  + VS+AILE+V+FCHQE++SWPLQEGAV+KKKFDDIFES+RYTKALD IK T+ E
Sbjct:    1 MSVVKKLSIRGIRSFGPDT-------DQIIEFYMPLTMIVGSNGCGKTTIIECLRYATTGILPPNSRNGQTFVHDPKMSNTTEVKAQIKLRLQRGVDMPIVVVRSLQLTQKKTTMQFKALDGVLKYGNNDGGNTSSTGVKCTDLDKQLPTLMRVSRAILESVIFCHQEESSWPLQEGAVLKKKFDDIFESARYTKALDVIKATRVE 199          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S4KCM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCM0_9STRA)

HSP 1 Score: 258 bits (659), Expect = 6.350e-82
Identity = 127/208 (61.06%), Postives = 164/208 (78.85%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDN-GASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQEDA 207
            MASI+KLS+RG+R+FS +         Q+I FY+PLT+IVG NGCGKTTIIE L+YA  G+LPPG R+GQ+FVHDPK++  + +KANIKLRF  R G   VV+RS +LTQKK T+QFKALDG++RT D N G  V+++HKC ELD+ IP  +GVSK ILE+VVF HQED+SWPLQ+ A +K+KFDDIF+S+RY KAL+ I+K++ E A
Sbjct:    1 MASISKLSVRGVRAFSPDDE------EQVISFYSPLTVIVGNNGCGKTTIIESLRYAVAGTLPPGTRSGQAFVHDPKSAGQTSVKANIKLRFNNRAGNSMVVVRSMELTQKKTTMQFKALDGILRTNDPNTGERVALSHKCGELDRQIPTLMGVSKPILEHVVFTHQEDSSWPLQDAASLKRKFDDIFDSTRYAKALEAIRKSRLEYA 202          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: F0Y226_AURAN (AAA_23 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y226_AURAN)

HSP 1 Score: 249 bits (637), Expect = 3.050e-81
Identity = 123/201 (61.19%), Postives = 153/201 (76.12%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKK 201
            MA I KL+IRGIR+FS ER        + IEF  PLTMIVGANGCGKTT+IE   Y  TG  PPG+ +G++FVHDPK S ++++KA +KLRF    G+  VV+RS QLTQ+K T  FK +DGVIR  D +G   S THKC ELDK +P  +GVSKA+LE+V+FCHQE++SWPLQEGAV+KKKFDDIFES+RY+KALD ++K
Sbjct:    1 MACIEKLAIRGIRAFSPER-------EEAIEFQTPLTMIVGANGCGKTTVIE---YGTTGCAPPGSNSGRAFVHDPKVSGVTEVKAQLKLRFKNYAGQRMVVVRSMQLTQRKTTATFKQMDGVIRANDASGERTSYTHKCGELDKTVPMLIGVSKAVLESVIFCHQEESSWPLQEGAVLKKKFDDIFESARYSKALDELRK 191          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S2KC82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC82_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.980e-81
Identity = 129/208 (62.02%), Postives = 164/208 (78.85%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPP--GARN-GQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDN-GASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 204
            MASI+KLSIRG+RSFS +         Q+I F  PLT+IVG NGCGKTTIIE LKYA TGSLPP  G+++ GQ+FVHDPK+   + +KANIKLRF  R G   VV+RS +LTQKK TL FKALDG++R+ D   G  VS++H+C ELD+ IPQ +GVSKAILE+VVFCHQED++WPL+EG+ +KK+FDDIF+S+RY KAL+ I+KT++
Sbjct:   12 MASISKLSIRGVRSFSPDGD------EQVIAFCFPLTIIVGQNGCGKTTIIESLKYAVTGSLPPAQGSKSSGQAFVHDPKSYGSTNVKANIKLRFTNRAGTSMVVVRSMELTQKKTTLTFKALDGILRSTDPTTGERVSMSHRCGELDRQIPQLMGVSKAILEHVVFCHQEDSNWPLREGSELKKRFDDIFDSTRYAKALEAIQKTRK 213          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.300e-80
Identity = 130/204 (63.73%), Postives = 167/204 (81.86%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 204
            M+SI KLSIRGIRSFS  R        ++IEFY PLT+I+G NGCGKTT+IECLK AC+GSLPPGAR+GQSFVHDPK +  +++KA+++LRF  R G+  VV R++Q+ Q K ++QFKALDGVIR  ++ G  VS+ HKC ELD+HIP  +GVSKAIL++V+FCHQE+A+WPLQEGAV+KK+FDDIFES+RYTKAL+ I+K K+
Sbjct:    1 MSSIEKLSIRGIRSFSPNR-------EEVIEFYHPLTVILGDNGCGKTTVIECLKVACSGSLPPGARSGQSFVHDPKIAGTNEVKASVRLRFRNRAGKAMVVQRTYQVRQLKASVQFKALDGVIRVVNELGEKVSMGHKCGELDRHIPDMMGVSKAILDSVIFCHQEEANWPLQEGAVLKKRFDDIFESARYTKALEAIRKLKK 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S1BNQ6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNQ6_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.810e-80
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 0
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESS 190
            MAS+NKLSIRGIRSFS +       + Q+I F  PLT+IVG NGCGKTTIIE LKYA TGSLPPG ++GQ+FV+DP++   S +KA+IKLRFA R G+  V IRS ++TQ K T+ FKALDG+IRT D+NG  VS++H+C+ELD+ +P  LGVS+ +LE+VVFCHQED+SWPL EG+V+KK+FDDIF+S+
Sbjct:    1 MASLNKLSIRGIRSFSPDD------VEQVISFGYPLTIIVGDNGCGKTTIIESLKYAVTGSLPPGNKSGQAFVNDPRSCGRSNVKASIKLRFANRAGKTMVCIRSVEVTQTKKTMSFKALDGIIRTTDENGQRVSLSHRCSELDRQVPALLGVSRPVLEHVVFCHQEDSSWPLMEGSVLKKRFDDIFDST 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G250_ECTSI1.710e-11382.13AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
H3GA74_PHYRM7.130e-8763.24AAA_23 domain-containing protein n=1 Tax=Phytophth... [more]
A0A1E7F3C8_9STRA1.750e-8663.90AAA_23 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2P4XQ47_9STRA1.150e-8462.25DNA repair protein RAD50 (Fragment) n=1 Tax=Phytop... [more]
A0A835YS38_9STRA3.230e-8463.59AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4KCM0_9STRA6.350e-8261.06Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
F0Y226_AURAN3.050e-8161.19AAA_23 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S2KC82_9STRA3.980e-8162.02Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A662WHK9_9STRA1.300e-8063.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S1BNQ6_9STRA5.810e-8062.63Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 3..207
e-value: 3.9E-27
score: 97.7
NoneNo IPR availablePANTHERPTHR18867RAD50coord: 1..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..208
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 6..204
e-value: 8.4E-29
score: 101.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51803contigH-elongata_contig51803:5..3215 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51803.12458.1mRNA_H-elongata_contig51803.12458.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51803 5..3215 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51803.12458.1 ID=prot_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTI
IECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMS
VVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQR
LGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIK
KTKQEDAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR027417P-loop_NTPase