mRNA_H-elongata_contig51781.12453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51781.12453.1
Unique NamemRNA_H-elongata_contig51781.12453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.610e-71
Identity = 159/315 (50.48%), Postives = 195/315 (61.90%), Query Frame = 1
Query:   16 NISNTDNKMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKG-------RAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDLPS-------PPHGR-GPRHGMPCG 903
            N  N DN M +S SIKINFQG SRDV +P PVTLA LQA +A+ F A+LP RS   +     DL FTYKDP+GDDIVFDKDSEL LA+RL P +LEISAA K           P   + +YK+AARNLREY+GVPSMTP KL + L  LKL P+ LV++GLAPK LL     +        + P      NEDLAE+V A MEL+++ED  KE N+  V  E  +  S +N  E ++D   P  +  + IH A +A  I++RPREVRPLL+AL V P R  KLG+VD KDL +         H R GP HG P G
Sbjct:    9 NRDNNDNTMTTS-SIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKE----KKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAVAPEVKKNL-IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHGPGHGGPRG 317          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 2.520e-71
Identity = 162/314 (51.59%), Postives = 194/314 (61.78%), Query Frame = 1
Query:   25 NTDNKMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLL---------RGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDLPS-------PPHGR-GPRHGMPCG 903
            N D  M +S SIKINFQG SRDV++P P TLA LQAA+A+ F  +LP RS+  +     DL FTYKDP+GDDIVFDKDSELNLALRL P +LEISAA K     +  T  P     +YK+AARNLREY+GVPSMTP KL + L  LKL P+ LV++GLAPK LL            + K R     N  NEDLAE V A ME ++VED  KE N+  V  E  E  S +N  E  +D   P  +  + IH A +A  I++RPREVRPLL+AL V P R  KLG+VD KDL +         H R GP HG P G
Sbjct:   23 NNDKTMTTS-SIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKE----NKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKN--NEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNL-IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHGPGHGGPRG 328          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.790e-68
Identity = 150/280 (53.57%), Postives = 183/280 (65.36%), Query Frame = 1
Query:   55 SIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
            SIKINFQG SRDV +P PVTLA LQAA+A  F A+LP RS   +     DL FTYKDP+GDDIVFDKDSELNLA+RL P +LEISAA K     +    KP   + +YK+AARNLREY+GVPSMTP KL + L  L+L P+ LV++GLAPK LL  A +K  A         P      NEDLAE+V A MEL++VED  KE N+  V  E  +  S  N  E ++D   P  +  + IH A +A  I++RPREVRPLL+AL V P R  KLG+V+ KDL
Sbjct:    5 SIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKE----NKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNL-IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDL 277          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 6.410e-66
Identity = 147/280 (52.50%), Postives = 178/280 (63.57%), Query Frame = 1
Query:   55 SIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDGHGD--LCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
            SIKI FQG SRDV +  PV LA LQAA+A+ F  +LP RS   +   D  L FTYKDP+GDDIVFDK+SEL LALRL P +LEISAA K     +  T  P    ++YK+AARNLREY+GVPSMTP KL + L  LKL P+ LV++GLAPK LL  A +K  A         P      NEDLAE+V A MEL++VEDG KE N+  V  E  E     N  E ++D     +  K  IH A +A  I++RPREVRPLL+AL V P+R  KLG+V  KDL
Sbjct:   23 SIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKE----NKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAK--KNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDL 294          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.720e-64
Identity = 147/296 (49.66%), Postives = 182/296 (61.49%), Query Frame = 1
Query:   37 KMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVENTEEKSG------------ENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
            K  ++ SIKINFQG SRDV +P PV+LA LQAA+A+ F A+LP RS   +     DL FTYKDP+GDDIVFDKDSEL LA+RL P +LEISA  K     S    KP   + +YK+AARNLREY+GVPSMT  KL + L  LKL P+ LV++GLAPK LL  A +K  A         P      NEDLAE+V A MEL++VED  KE N+  V    + S             +N  E  ++   P  +  + IH A +   I++RPREVRPLL+AL V P R  KLG+VD KDL
Sbjct:   17 KTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKE----SEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDL-IHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 305          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 6.930e-64
Identity = 147/290 (50.69%), Postives = 180/290 (62.07%), Query Frame = 1
Query:   55 SIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTT---------NEDLAETVRANMELVAVEDGTKELNENLVE------------NTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
            SIKINFQG SR+V +  P TLA LQA +A+ F A+LP RS   +     DL FTYKDP+GDDIVFDKDSELNLA+RL PD+LEISAA K   +  P   KP     +YK+AARNLREY+GVPSMT  KL + L  LKL PR LV++GLAPK LL  A +K  A   +  +         NEDLAE+V A MEL++VED  KE N   V               +  S +N  E  +D   P  +  + IHTA +A  I++RPREVRPLL+AL V P R  KLG+V+ K L
Sbjct:    5 SIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGK---ENKPDN-KPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLL--ARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNL-IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYL 287          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.460e-55
Identity = 134/270 (49.63%), Postives = 165/270 (61.11%), Query Frame = 1
Query:   37 KMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVE------------NTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPRE 777
            KM ++ SIKINFQG SRDV +P PVTL  LQAA+A+ F A+LP RS   +     DL FTYKDP+GDDIVFDKDSEL LA+RL P +LEISAA K     S    KP   + +YK+AARNLREY+GVPSMTP KL + L  LKL P+ LV++GLAPK LL  A +K  A         P      NEDLA++V A MEL++VED  KE N+  V               E  S +N  E  +D   P  +  + IH A +A  I++RPRE
Sbjct:   14 KMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKE----SKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNL-IHKAFIAGGIQLRPRE 275          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.690e-23
Identity = 80/189 (42.33%), Postives = 102/189 (53.97%), Query Frame = 1
Query:  367 IYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDLP-SPPHGR--GP---RHGMPCGPMDR 915
            +YK  ARNLREYHGVPSMT D L + + LL+L P  LV +GLAP+KLL+G           +++    +E      +   V D            + +   +N  +         +R K P+H ALVAA I +RPRE RPLL ALGV PHR VKLG+V  ++L  S P GR  GP   RHG P GP  R
Sbjct:   26 LYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHADTTDSSGSSGSEVEPEQADDNQVSDDXXX----XXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSRPGGRRGGPSHLRHGHPGGPGGR 210          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-11
Identity = 56/143 (39.16%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  367 IYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTTNEDLAETV-RANMELVAVEDGTKELNENLVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLL 792
            +YK AARNL EYHGVPSMT   L + + LL+L P  LV +GLAPK+LL G    G A                  + E       + + N N  + T+ +    A +   D ET     K PIH   VAA +++RPRE RPLL
Sbjct:   51 LYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIEHDHVATQDSIDIETGAS--KHPIHAVFVAAGVQLRPRETRPLL 191          
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.320e-11
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  367 IYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIV 840
            ++K AARNLREYHGVPS+TP  L   + LL+L P  LV +GLAPK LL+G    G      + +    AE  +AN +       + +L+ N  +  +  +G + +  ++      R  K PI    VA  +++RPRE RPLL  + +     V L +V
Sbjct:   41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGSGGFEAEEEQANNQF------SHDLSSNSSDGGD--TGNDNIVTQNSIGFEARASKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVV 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LN66_ECTSI1.610e-7150.48PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE2.520e-7151.59PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI1.790e-6853.57PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE6.410e-6652.50PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE2.720e-6449.66PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE6.930e-6450.69PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI1.460e-5549.63PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVV7_9PHAE3.690e-2342.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J2_9PHAE1.300e-1139.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG1_9PHAE1.320e-1135.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51781contigH-elongata_contig51781:413..4040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1946
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51781.12453.1prot_H-elongata_contig51781.12453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51781 452..3261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.8178709-UTR-H-elongata_contig51781:412..4511622930846.8178709-UTR-H-elongata_contig51781:412..451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51781 413..451 +
1691679595.6885517-UTR-H-elongata_contig51781:412..4511691679595.6885517-UTR-H-elongata_contig51781:412..451Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51781 413..451 +
1622930846.8835974-UTR-H-elongata_contig51781:3261..40401622930846.8835974-UTR-H-elongata_contig51781:3261..4040Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51781 3262..4040 +
1691679595.7230916-UTR-H-elongata_contig51781:3261..40401691679595.7230916-UTR-H-elongata_contig51781:3261..4040Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51781 3262..4040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.836917-CDS-H-elongata_contig51781:451..7271622930846.836917-CDS-H-elongata_contig51781:451..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51781 452..727 +
1691679595.6996617-CDS-H-elongata_contig51781:451..7271691679595.6996617-CDS-H-elongata_contig51781:451..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51781 452..727 +
1622930846.8675556-CDS-H-elongata_contig51781:2409..32611622930846.8675556-CDS-H-elongata_contig51781:2409..3261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51781 2410..3261 +
1691679595.7126756-CDS-H-elongata_contig51781:2409..32611691679595.7126756-CDS-H-elongata_contig51781:2409..3261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51781 2410..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51781.12453.1

>prot_H-elongata_contig51781.12453.1 ID=prot_H-elongata_contig51781.12453.1|Name=mRNA_H-elongata_contig51781.12453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
MASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG
HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQ
TAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRG
LAPKKLLRGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNEN
LVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPL
LIALGVHPHRFVKLGIVDAKDLPSPPHGRGPRHGMPCGPMDRRIGFFHPR
FMFVAPPPPPQMGVNHAAPLVHRSPHPMEGHPIHDVPQMHGGGPACVRGG
AGVRRGGPRGPRGCGGRPRCGYHCG*
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mRNA from alignment at H-elongata_contig51781:413..4040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51781.12453.1 ID=mRNA_H-elongata_contig51781.12453.1|Name=mRNA_H-elongata_contig51781.12453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3628bp|location=Sequence derived from alignment at H-elongata_contig51781:413..4040+ (Himanthalia elongata Himel1 dioecious)
ATCAATACTACCACCAACATCAGCAACACAGACAACAAGATGGCTTCCTC TCGCTCCATCAAGATCAACTTTCAAGGAGAATCTCGTGATGTCGCTCTTC CTACGCCGGTCACCCTGGCCGGTCTCCAGGCCGCCGTTGCTTCAACGTTC AGCGCCGATCTCCCTCCTCGATCGGTAGAAGATGATGGCCATGGTGACCT ATGCTTCACTTACAAGGACCCCGAGGGCGACGACATCGTCTTTGACAAGG ACTCTGAGCTGAACCTGGCTCTGCGCCTGATCCCCGATACATTGGAGATT TCTGCAGCGAGCAAGGTGGGTGTGGGACGGGAGGGAGAGTTCCCTTCGAA TCCCTATAATAATAGTTCTATTGGTTGCCAACCCGATCTATCCATCTGCT ACATACAATACTACTAATAATACTGCTGCTGCTAAACACTTAACACCGCA GGTGGCCAAAACCCCTTCTGGCCTTCTGGTCCTTCTGGTCTAGTGAAAAC AAAACAGTCGCTCATCGCTATATAACAACGTTTCCGTAAAAATGGAGAGT GAAGTGCAGTAGTATAGGATGGAGAGGGAGTTTTCCATTTCGCTGTACGA GGTAGCTTAACCATATGAACTCAGTCAAGTAAGTGGTAAATTCAAAAAGA AGGAGAAAGAGCCAGTCAAGCCAAGACAAGAGAAGTACAAGCGATGGATA AGAGAGCATGTATTTAGCAGACAGAGTGGGTACTGTAGGTAGCCAACAGC TAATAATAACAAAAAATAGAAAAAAGAACACGATAGAAAAGGCGAAGCAA GGAAAGGACGAACAATATTATAATAATATCGGTATACAATAGAGGGAATT AATGAGCCTTCAACACAAAAAAAACGGAAAGAGATATACTATTATGTAGT AGATATATATATAGATATATATTAAAGAAACGTAAACTTACTGGTAATTC GCGAAATATTTTCGTGCATGGGGGCTAAGTCATCCGATGGCGTTTACCAC AGAGAGTCCACCGGCACTAAGCCAATAGTCCTCAATGAAGCACGAGTAAC GGGTGAAGCCTATTCAGGTAACCCCATGGACCACATTTATAATAGGTAGC TAGTGAGAAGTGGATGAAATTCGAGTAACTGATATACGAAAGTATATTGG TTTTATAACGTATATTCATAAATTTTGAAAGTATTCTGTTTTCAGAGCAT TTAATTTCAGAACAACATGCACCTCACACGACAGAAATGTACGCATTATT AATAGAGCCTTTCGAGCATTGAGAGTGGCAGATATAGCGAATAGTTTTTG CCCTTGTGTGATCAACTCTATCGCTAGTCAAGTTCAGCACTCCTACACCT CGTCGGCTACACAAATTGTTGAACTTAGCTACATAAGTAAAAGAGCCAGT CATGGTAGGATTCGAAGTGAACCAACCTTTCGGGCTAATCCTTGTTTTGG TCCACGAAATCCGAAATCTCTAAAACAAAATGTCGCCCGAGGAGCATAAC TGACATTAATATTTACACCCTTTGAACCGGGGATGAAACGGTGTGGTAGC TGGTATTGATAATCAAGCATGTTGGATAGCTCCATCCACAGAAGGTCACC CCCTATCAAACTTCGATAGATAAAACGTTCCTGTCATCCGCTACGACTCC TCTATCGACCTAATTTCGTACGAAGATCGTGATAAACTACAACCAAGTAC AAAGATCCCCTTGACTTTACAACTCGGTGTAATGGATGTGTGTAGATATT CGGAGGGTTTGACTGAATTTATAAGTTATTTAGAAAAGTTTTTTCCTGAT AGCCTATGCGTTACTGCTGTCCCCCGTGATCAAGCGCGTTTAGACTAGCC CTAGCTCTCCCCTACAGCACGGACTGTAGCATCGCTGTCTCTTTCACTGT ATGTCGCTCGATTTTTCTACTGTCTCAACTCGCACCTCAGGCAACCAATC CTTGCCTTTCTTGCTGCCTCCATCGTCAACTACCTTGTGTTCTGTAGGTG CCGTTCCAATTTTCGCCTCAGACTGCCAAGCCTCATGAATCGAGCGAGAT CTACAAGCTGGCCGCTCGCAACCTGCGGGAGTATCACGGTGTGCCGTCCA TGACGCCTGATAAGCTCACCAGGATGCTCACCCTCTTGAAGCTGGGTCCT CGCCACCTCGTCAGACGAGGTCTTGCGCCGAAGAAGCTTTTACGAGGGGC GATGGTTAAGGGACGGGCGCCTCCTTGTGTCAATACCACCAACGAGGACC TCGCCGAGACTGTCCGCGCCAACATGGAGCTGGTGGCTGTTGAAGACGGC ACAAAGGAGCTCAACGAGAACCTCGTGGAAAATACAGAAGAGAAGAGTGG CGAGAACGCTATGGAGATGAGAGACGATTGCGAGACGCCCGGTCGTAGGC CTAAGATGCCCATCCACACCGCCCTCGTCGCCGCCGAGATCAAGATTCGC CCCCGGGAGGTGAGGCCTCTCCTCATTGCCCTTGGCGTGCACCCCCATCG CTTCGTCAAGCTCGGCATTGTCGACGCCAAGGACCTTCCCAGCCCCCCTC ACGGCCGCGGCCCTCGCCATGGTATGCCCTGCGGACCGATGGACCGCCGC ATTGGCTTCTTCCACCCGCGCTTTATGTTTGTCGCTCCCCCGCCCCCCCC GCAAATGGGCGTGAATCACGCGGCTCCCCTGGTTCACCGCAGCCCTCATC CCATGGAGGGACACCCTATCCATGACGTGCCGCAAATGCACGGCGGCGGT CCCGCGTGTGTCCGTGGTGGTGCTGGAGTCCGGCGCGGTGGCCCGAGAGG ACCTCGAGGGTGCGGTGGGCGCCCGCGATGTGGGTACCACTGCGGCTAAT CGGCCAGTCGCGACATGAGATAGCACACTAACATGAGGGCACAGCTATCC GTCCTTGGCGGCCTTGTTGAGCAAGGGGTGTAGAGGGAAGGTGCCATTTG GGCATAGGTGATCTCATGTGGAGTATGGTCCTTAACAGTAGAGCTGTAGT TATGCAAGCGGGCAGATGTCTCCCTCGGAAAAATTGATACGAGGGTTGGA CACCAGAAGTGAATCGAAAGTGTTCTCACACAATTTGAGACATGTGCCCG AATGCAGATTGGTGGATTAGTATATTGTCGGCTGAATATCTTGCATAAAA ACATTGCATATTGACGTTCGTAGGAAAAATTAAGGATTGCCTTGCAGCAG CTTCAGCAGTTTGCTTCTTGCCGCGGACTAATCAACCTAGTACTGCACAA GATGGGCCATACGATGTACCCTGGTACATACACTGGACGGTGGTACCTTT TTCTATGTAATATATTAAAGCTAAAGAATAGGTGTGTTTTTGATAGCATA TCCGCCTTCAATGCGCCTTGATCGATGTTGAGTCGGGGCGGTGAGGACTT TGTACGAATGCAGATCATATATATGTTTGGTATGGGTAGTATGTTTGGTA TCAACGATGCCGTCAATGGACCTTGATGACGTAGTGAGTCTGGGCGTAGT ATCTATATTAGGGCATTTGGTGTAAAATTTATGTGGGAAATTGTTTTTTG GAAATGGATAATATATGTGTCTGGTACCACAAATGCTTTCAGCGCTTCCA GAATTTTTCTTTTTTATCTTTTTCTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig51781:413..4040+

>mRNA_H-elongata_contig51781.12453.1 ID=mRNA_H-elongata_contig51781.12453.1|Name=mRNA_H-elongata_contig51781.12453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig51781:413..4040+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCCTCTCGCTCCATCAAGATCAACTTTCAAGGAGAATCTCGTGA
TGTCGCTCTTCCTACGCCGGTCACCCTGGCCGGTCTCCAGGCCGCCGTTG
CTTCAACGTTCAGCGCCGATCTCCCTCCTCGATCGGTAGAAGATGATGGC
CATGGTGACCTATGCTTCACTTACAAGGACCCCGAGGGCGACGACATCGT
CTTTGACAAGGACTCTGAGCTGAACCTGGCTCTGCGCCTGATCCCCGATA
CATTGGAGATTTCTGCAGCGAGCAAGATGGCTTCCTCTCGCTCCATCAAG
ATCAACTTTCAAGGAGAATCTCGTGATGTCGCTCTTCCTACGCCGGTCAC
CCTGGCCGGTCTCCAGGCCGCCGTTGCTTCAACGTTCAGCGCCGATCTCC
CTCCTCGATCGGTAGAAGATGATGGCCATGGTGACCTATGCTTCACTTAC
AAGGACCCCGAGGGCGACGACATCGTCTTTGACAAGGACTCTGAGCTGAA
CCTGGCTCTGCGCCTGATCCCCGATACATTGGAGATTTCTGCAGCGAGCA
AGGTGCCGTTCCAATTTTCGCCTCAGACTGCCAAGCCTCATGAATCGAGC
GAGATCTACAAGCTGGCCGCTCGCAACCTGCGGGAGTATCACGGTGTGCC
GTCCATGACGCCTGATAAGCTCACCAGGATGCTCACCCTCTTGAAGCTGG
GTCCTCGCCACCTCGTCAGACGAGGTCTTGCGCCGAAGAAGCTTTTACGA
GGGGCGATGGTTAAGGGACGGGCGCCTCCTTGTGTCAATACCACCAACGA
GGACCTCGCCGAGACTGTCCGCGCCAACATGGAGCTGGTGGCTGTTGAAG
ACGGCACAAAGGAGCTCAACGAGAACCTCGTGGAAAATACAGAAGAGAAG
AGTGGCGAGAACGCTATGGAGATGAGAGACGATTGCGAGACGCCCGGTCG
TAGGCCTAAGATGCCCATCCACACCGCCCTCGTCGCCGCCGAGATCAAGA
TTCGCCCCCGGGAGGTGAGGCCTCTCCTCATTGCCCTTGGCGTGCACCCC
CATCGCTTCGTCAAGCTCGGCATTGTCGACGCCAAGGACCTTCCCAGCCC
CCCTCACGGCCGCGGCCCTCGCCATGGTATGCCCTGCGGACCGATGGACC
GCCGCATTGGCTTCTTCCACCCGCGCTTTATGTTTGTCGCTCCCCCGCCC
CCCCCGCAAATGGGCGTGAATCACGCGGCTCCCCTGGTTCACCGCAGCCC
TCATCCCATGGAGGGACACCCTATCCATGACGTGCCGCAAATGCACGGCG
GCGGTCCCGCGTGTGTCCGTGGTGGTGCTGGAGTCCGGCGCGGTGGCCCG
AGAGGACCTCGAGGGTGCGGTGGGCGCCCGCGATGTGGGTACCACTGCGG
CTAAGTGCCGTTCCAATTTTCGCCTCAGACTGCCAAGCCTCATGAATCGA
GCGAGATCTACAAGCTGGCCGCTCGCAACCTGCGGGAGTATCACGGTGTG
CCGTCCATGACGCCTGATAAGCTCACCAGGATGCTCACCCTCTTGAAGCT
GGGTCCTCGCCACCTCGTCAGACGAGGTCTTGCGCCGAAGAAGCTTTTAC
GAGGGGCGATGGTTAAGGGACGGGCGCCTCCTTGTGTCAATACCACCAAC
GAGGACCTCGCCGAGACTGTCCGCGCCAACATGGAGCTGGTGGCTGTTGA
AGACGGCACAAAGGAGCTCAACGAGAACCTCGTGGAAAATACAGAAGAGA
AGAGTGGCGAGAACGCTATGGAGATGAGAGACGATTGCGAGACGCCCGGT
CGTAGGCCTAAGATGCCCATCCACACCGCCCTCGTCGCCGCCGAGATCAA
GATTCGCCCCCGGGAGGTGAGGCCTCTCCTCATTGCCCTTGGCGTGCACC
CCCATCGCTTCGTCAAGCTCGGCATTGTCGACGCCAAGGACCTTCCCAGC
CCCCCTCACGGCCGCGGCCCTCGCCATGGTATGCCCTGCGGACCGATGGA
CCGCCGCATTGGCTTCTTCCACCCGCGCTTTATGTTTGTCGCTCCCCCGC
CCCCCCCGCAAATGGGCGTGAATCACGCGGCTCCCCTGGTTCACCGCAGC
CCTCATCCCATGGAGGGACACCCTATCCATGACGTGCCGCAAATGCACGG
CGGCGGTCCCGCGTGTGTCCGTGGTGGTGCTGGAGTCCGGCGCGGTGGCC
CGAGAGGACCTCGAGGGTGCGGTGGGCGCCCGCGATGTGGGTACCACTGC
GGCTAA
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