mRNA_H-elongata_contig115713.1245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115713.1245.1
Unique NamemRNA_H-elongata_contig115713.1245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115713.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115713contigH-elongata_contig115713:1200..1504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.4183195-CDS-H-elongata_contig115713:1199..15021622929671.4183195-CDS-H-elongata_contig115713:1199..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115713 1200..1502 +
1691679113.7181993-CDS-H-elongata_contig115713:1199..15021691679113.7181993-CDS-H-elongata_contig115713:1199..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115713 1200..1502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115713.1245.1prot_H-elongata_contig115713.1245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115713 1200..1502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115713.1245.1

>prot_H-elongata_contig115713.1245.1 ID=prot_H-elongata_contig115713.1245.1|Name=mRNA_H-elongata_contig115713.1245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
PLFLRTHIGDVGNKIASTVRAAPPVIEAWEKCTEVFRGREGSVHMDGLLD
FLFGKWQNMRMGDYTRRLSEVSDFSRAAEITNLPLRTKMKAQGLTMAQKE
G
back to top

mRNA from alignment at H-elongata_contig115713:1200..1504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115713.1245.1 ID=mRNA_H-elongata_contig115713.1245.1|Name=mRNA_H-elongata_contig115713.1245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=305bp|location=Sequence derived from alignment at H-elongata_contig115713:1200..1504+ (Himanthalia elongata Himel1 dioecious)
CCGCTATTCCTACGAACGCATATAGGAGATGTAGGCAATAAGATCGCGTC
AACCGTGAGGGCAGCCCCCCCCGTGATAGAAGCGTGGGAGAAGTGCACCG
AGGTTTTCAGAGGTAGAGAGGGGTCAGTCCACATGGACGGGCTACTTGAC
TTCTTGTTTGGTAAATGGCAGAACATGCGCATGGGGGACTATACGCGAAG
GCTTAGTGAGGTGTCGGACTTTTCTAGGGCCGCAGAAATTACCAATCTAC
CGTTGCGTACAAAAATGAAGGCCCAAGGTCTGACCATGGCACAGAAAGAA
GGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig115713:1200..1504+

>mRNA_H-elongata_contig115713.1245.1 ID=mRNA_H-elongata_contig115713.1245.1|Name=mRNA_H-elongata_contig115713.1245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig115713:1200..1504+ (Himanthalia elongata Himel1 dioecious)
CCGCTATTCCTACGAACGCATATAGGAGATGTAGGCAATAAGATCGCGTC
AACCGTGAGGGCAGCCCCCCCCGTGATAGAAGCGTGGGAGAAGTGCACCG
AGGTTTTCAGAGGTAGAGAGGGGTCAGTCCACATGGACGGGCTACTTGAC
TTCTTGTTTGGTAAATGGCAGAACATGCGCATGGGGGACTATACGCGAAG
GCTTAGTGAGGTGTCGGACTTTTCTAGGGCCGCAGAAATTACCAATCTAC
CGTTGCGTACAAAAATGAAGGCCCAAGGTCTGACCATGGCACAGAAAGAA
GGACCGCTATTCCTACGAACGCATATAGGAGATGTAGGCAATAAGATCGC
GTCAACCGTGAGGGCAGCCCCCCCCGTGATAGAAGCGTGGGAGAAGTGCA
CCGAGGTTTTCAGAGGTAGAGAGGGGTCAGTCCACATGGACGGGCTACTT
GACTTCTTGTTTGGTAAATGGCAGAACATGCGCATGGGGGACTATACGCG
AAGGCTTAGTGAGGTGTCGGACTTTTCTAGGGCCGCAGAAATTACCAATC
TACCGTTGCGTACAAAAATGAAGGCCCAAGGTCTGACCATGGCACAGAAA
GAAGGA
back to top