mRNA_H-elongata_contig51651.12439.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51651.12439.1
Unique NamemRNA_H-elongata_contig51651.12439.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: D8LTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ1_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 2.190e-99
Identity = 173/211 (81.99%), Postives = 186/211 (88.15%), Query Frame = 1 
Query:   34 LDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEEDSGPMYDAQPTTLPQEPSVVPESTGPTGVDEFGLPVGPTPDRPAAVRL*T*INQCGLSCY*ITSID 666
            LDQEL+KYRNALKKAKGP A NIK+RAMETLKRKKMYE QRDQMAGQQFNIEQT FAIDS+KDTATTVAAMKDASKTLKADIKKIDI +VEDMTDDMAXXXXXXNEIND+MGRSYNVGDE+DEDDLDAELACLDDELDALEGLEED+GP Y AQP +LPQEPS+VPESTGPTGVDEFGLPV P P RPA  R  +  +Q  +  Y    +D
Sbjct:  112 LDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLPQEPSLVPESTGPTGVDEFGLPVNPAPARPAQERFGS--SQVSVGAYTAVELD 320
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A7S2FVB6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVB6_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.140e-59
Identity = 128/198 (64.65%), Postives = 147/198 (74.24%), Query Frame = 1 
Query:   10 SLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEEDSGPMYDAQPTTLPQEPSVVPESTGPT-------GVDEFGLPVGP 582
            ++  +I  LD EL KY+  LKKAKGP AANIKRRAMETLKRKKMYEQQRDQMAGQ FNIEQTSFAIDS+KDT TTVAAMKDA+KTLKA+ KK++I Q+ED      XXXXXX  IND+MGR+Y + DE+DE DLDAELACL+DEL+ LE  E ++ P Y  QP  +P EPS VP             GVD FGLPV P
Sbjct:   56 AMDEKIAKLDLELRKYKEQLKKAKGPTAANIKRRAMETLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKDAAKTLKAETKKLNIDQIEDTQXXXXXXXXXXXXINDMMGRAYGMPDEVDEADLDAELACLEDELEGLEEGETEAAPSY-LQPAGMPVEPSAVPAGAPAADAAAEADGVDAFGLPVAP 252
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A7S2AMY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMY1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 7.630e-55
Identity = 112/177 (63.28%), Postives = 128/177 (72.32%), Query Frame = 1 
Query:   76 AKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEEDSGPMYDAQPTTLPQEPSVVPESTGPT--------GVDEFGLPVGP 582
            AKGP AANIKRRAM+TLKRKKMYEQQRDQMAGQ FNIEQTSFAIDS+KDT TTVAAMK A+ TLKA+ KK++I  +ED  DD+       NEIN++MGRSY V DEMDE+DLDAELACLDDEL+ +E  EE         P  LP EPS  P    P+        G+D+FGLPV P
Sbjct:   52 AKGPTAANIKRRAMDTLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKVAASTLKAETKKLNIDSIEDTQDDLGDMMEDMNEINEMMGRSYGVPDEMDEEDLDAELACLDDELEGIEAGEEAEASYLG--PAGLPVEPSAEPAGANPSAALPADGGGMDDFGLPVAP 226
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A835ZMU4_9STRA (Snf7 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMU4_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.540e-51
Identity = 102/142 (71.83%), Postives = 123/142 (86.62%), Query Frame = 1 
Query:    4 TPSLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELAC 429
            T +L  +IK LDQEL+++++AL KAKG AA NIKRRAMETLKRKKMYE QRDQ+AGQQFNIEQT+F IDS+KDT TTV AMK A+K +K++ KK++I ++ED  DD+AXXXXX NEIND+MGRSYNVGDE+DE DLDAELAC
Sbjct:   28 TRNLDEKIKVLDQELLRHKHALAKAKGQAAVNIKRRAMETLKRKKMYEAQRDQLAGQQFNIEQTNFTIDSIKDTQTTVQAMKGANKQIKSEFKKMNISEIEDTIDDLAXXXXXMNEINDIMGRSYNVGDEIDEADLDAELAC 169
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BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A7S4EE62_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE62_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.740e-48
Identity = 104/191 (54.45%), Postives = 137/191 (71.73%), Query Frame = 1 
Query:    4 TPSLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEEDSGPMYDAQPTTLPQEPSVVPESTGPTGVDEFGLPV 576
            T +L  +I+ LD EL  Y+  LKKA+G A   +KRRAM  L+RK+MYEQQRDQ+AGQ FN+EQT+FAIDSVKDT TTV AMK ASKTLK ++KK+D+ Q+ED+ DD+AXXXXXX  + DV+G+SY +GD++D+ DLDAEL  L D+ D +   +     +  A P+ +P +P+  P       VDEFGLPV
Sbjct:   28 TTALDEKIRKLDIELAGYKEKLKKARGAAQQTLKRRAMGVLRRKRMYEQQRDQLAGQAFNVEQTNFAIDSVKDTLTTVQAMKTASKTLKKEVKKVDLSQIEDLQDDLAXXXXXXXXVQDVLGQSYGIGDDIDDADLDAELDALGDDFDDVADADATPAYLQPADPSLMPDQPTDAPVQAD--DVDEFGLPV 216
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A7S3K2P3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2P3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 5.050e-48
Identity = 115/195 (58.97%), Postives = 142/195 (72.82%), Query Frame = 1 
Query:   10 SLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDA-LEGLEEDSGPMY--DAQPTTLPQEPSV---VPESTGPTGVDEFGLPV 576
            +L  +IK L+ EL  Y+  LK+A+GPA   +K+RAM  LKRKKMYEQQRDQ+AGQ FNIEQT+F IDSVKDT TTV AMK ASKTLK + KK++I +++D+ D   XXXXXXNE+ DV+GRSY+VG+++DE DLDAEL  L D+LDA LE  + DS P Y   A+PT LP+        PES     VDEFGLPV
Sbjct:   39 ALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTEFKKVNIDKIDDLQDXXXXXXXXXNEVQDVLGRSYDVGEDIDEADLDAELEALGDDLDAELELDDADSTPAYLQPAEPTNLPEXXXXXXXAPESA----VDEFGLPV 229
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A812Y1R2_SYMMI (CHMP5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1R2_SYMMI)

HSP 1 Score: 173 bits (439), Expect = 9.070e-48
Identity = 104/200 (52.00%), Postives = 137/200 (68.50%), Query Frame = 1 
Query:   10 SLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEEDSG---PMYDAQPTTLPQEPSV--------VPESTGPTGVDEFGLPV 576
            +L  +IKA D EL  Y+  + KAKGPA A I+RRA+E LKRKKMYEQQRDQ+ GQ FN++Q +FA++++KDT TTVAAMKDA+K LK +  KID+ ++ED+ DD+A      NEI++ +GRSY   D +DEDDL+AELACL DE D  E L E+     P Y   P+ +P  P+          P++  P+GVDEFGLPV
Sbjct:   30 ALDEKIKAADNELRVYKTQIAKAKGPAKAGIQRRAVEVLKRKKMYEQQRDQLCGQAFNLDQAAFAMETIKDTHTTVAAMKDAAKQLKVEHAKIDLNEIEDLNDDLADMFEDMNEISETLGRSYGTPDYIDEDDLEAELACLGDEFD--EELTEEVSLEQPSY-LSPSGMPHVPAAGLPVPTIAQPQAPQPSGVDEFGLPV 226
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: F0Y671_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y671_AURAN)

HSP 1 Score: 171 bits (434), Expect = 2.540e-47
Identity = 98/154 (63.64%), Postives = 116/154 (75.32%), Query Frame = 1 
Query:   76 AKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEEDSGPMY--DAQPTTLPQEPSVVP 531
            AKGPAA  +K+RAM  LKRKKMYE QRDQ+AGQ FN+EQTSFAIDSVKDT TTV AMK ASKTLK + KK+DI Q+ED+ DD+A      NE+ D +GRSY +GD++DE DLDAELACLDDEL   E   EDS P Y   A P  LP++P+ +P
Sbjct:   52 AKGPAAKTLKQRAMAVLKRKKMYEAQRDQLAGQAFNVEQTSFAIDSVKDTLTTVDAMKAASKTLKTEFKKVDIDQIEDVQDDLADMMEDMNEVQDALGRSYGIGDDVDEADLDAELACLDDELGMDELGLEDSTPAYLQPADPGALPEQPTNLP 205
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: W4HCB2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCB2_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.560e-43
Identity = 96/192 (50.00%), Postives = 132/192 (68.75%), Query Frame = 1 
Query:   10 SLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLE-EDSGPMYDAQPTTLPQEPSVVPESTGPTGVDEFGLPVGP 582
            +L  +I  L++EL KYR  + KAKGPA  +IK+RA++TLKRKKMYEQQRD MA Q FNIEQ SFAI++ KD+  TV+AMK A+  LKA+ KK +  ++E++ DDMA      NEI +++GRSY VG ++DE +L+AEL  L+DE    E +  + + P Y A  T LP  P+ V ++    GVDE+GLP+ P
Sbjct:   30 NLDMKISKLEEELQKYRQQMAKAKGPALTSIKQRALQTLKRKKMYEQQRDSMAAQSFNIEQASFAIETAKDSLDTVSAMKSAATQLKAETKKFNFAELENVQDDMADMMDDMNEIQEILGRSYGVGQDIDESELEAELEGLEDEWAMEEAVAPQHAAPSYLA--TDLPAAPTGVKDTPTAAGVDEYGLPLAP 219
[Close]
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Match: A0A485L0R2_9STRA (Aste57867_14479 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0R2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.920e-42
Identity = 96/192 (50.00%), Postives = 130/192 (67.71%), Query Frame = 1 
Query:   10 SLHPQIKALDQELIKYRNALKKAKGPAAANIKRRAMETLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKTLKADIKKIDIGQVEDMTDDMAXXXXXXNEINDVMGRSYNVGDEMDEDDLDAELACLDDELDALEGLEE-DSGPMYDAQPTTLPQEPSVVPESTGPTGVDEFGLPVGP 582
            +L  +I  L++EL+KYR  + KAKG A  +IK+RA++TLKRKKMYEQQRD MA Q FNIEQ SFAI++ KD+  TV+AMK A+  LKA+ KK +  ++E++ DDMA      NEI +++GRSY +G ++DE +L+AEL  L+DE    E +    S P Y A  T LP  PS   +    TGVDE+GLP+ P
Sbjct:   30 TLDMKIAKLEEELLKYRQQMAKAKGAALTSIKQRALQTLKRKKMYEQQRDAMASQSFNIEQASFAIETAKDSLDTVSAMKSAATQLKAETKKFNFAELENVQDDMADMMEDMNEIQEILGRSYGLGQDVDESELEAELEGLEDEWAMEEAIAPATSAPAYLA--TDLPAAPSGQKDKPQATGVDEYGLPMAP 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51651.12439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ1_ECTSI2.190e-9981.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FVB6_9STRA1.140e-5964.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AMY1_9STRA7.630e-5563.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZMU4_9STRA5.540e-5171.83Snf7 family n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S4EE62_9STRA1.740e-4854.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3K2P3_9STRA5.050e-4858.97Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812Y1R2_SYMMI9.070e-4852.00CHMP5 protein n=1 Tax=Symbiodinium microadriaticum... [more]
F0Y671_AURAN2.540e-4763.64Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
W4HCB2_9STRA2.560e-4350.00Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A485L0R2_9STRA1.920e-4250.00Aste57867_14479 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51651contigH-elongata_contig51651:1456..3917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.2
Seed ortholog evalue1.3e-69
Seed eggNOG ortholog2880.D8LTZ1
Preferred nameCHMP5
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K12198
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko04144,ko04217,map00860,map01100,map01110,map01120,map04144,map04217
KEGG ModuleM00121,M00412
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000815,GO:0000819,GO:0000920,GO:0001919,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008104,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019058,GO:0019068,GO:0019222,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0030447,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0032509,GO:0032510,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0061024,GO:0061025,GO:0061763,GO:0065007,GO:0070507,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0080171,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0098852,GO:0140014,GO:1901673,GO:1902115,GO:1903047,GO:1904896,GO:1904903
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG1655@1,KOG1655@2759
EC4.2.1.24
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSnf7 family protein
Ec32 orthologEc-12_003810.1
Exons4
Model size1405
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51651.12439.1prot_H-elongata_contig51651.12439.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51651 1570..3127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.266893-UTR-H-elongata_contig51651:1455..15691622930845.266893-UTR-H-elongata_contig51651:1455..1569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51651 1456..1569 +
1691679594.98789-UTR-H-elongata_contig51651:1455..15691691679594.98789-UTR-H-elongata_contig51651:1455..1569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51651 1456..1569 +
1622930845.3555002-UTR-H-elongata_contig51651:3127..39171622930845.3555002-UTR-H-elongata_contig51651:3127..3917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51651 3128..3917 +
1691679595.054116-UTR-H-elongata_contig51651:3127..39171691679595.054116-UTR-H-elongata_contig51651:3127..3917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51651 3128..3917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.2854385-CDS-H-elongata_contig51651:1569..16891622930845.2854385-CDS-H-elongata_contig51651:1569..1689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 1570..1689 +
1691679595.0009916-CDS-H-elongata_contig51651:1569..16891691679595.0009916-CDS-H-elongata_contig51651:1569..1689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 1570..1689 +
1622930845.2999897-CDS-H-elongata_contig51651:1926..20721622930845.2999897-CDS-H-elongata_contig51651:1926..2072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 1927..2072 +
1691679595.0102847-CDS-H-elongata_contig51651:1926..20721691679595.0102847-CDS-H-elongata_contig51651:1926..2072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 1927..2072 +
1622930845.3190353-CDS-H-elongata_contig51651:2457..25241622930845.3190353-CDS-H-elongata_contig51651:2457..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 2458..2524 +
1691679595.0200768-CDS-H-elongata_contig51651:2457..25241691679595.0200768-CDS-H-elongata_contig51651:2457..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 2458..2524 +
1622930845.3368492-CDS-H-elongata_contig51651:2959..31271622930845.3368492-CDS-H-elongata_contig51651:2959..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 2960..3127 +
1691679595.0377603-CDS-H-elongata_contig51651:2959..31271691679595.0377603-CDS-H-elongata_contig51651:2959..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51651 2960..3127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51651.12439.1

>prot_H-elongata_contig51651.12439.1 ID=prot_H-elongata_contig51651.12439.1|Name=mRNA_H-elongata_contig51651.12439.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
METLKRKKMYEQQRDQMAGQQFNIEQTSFAIDSVKDTATTVAAMKDASKT
LKADIKKIDIGQVEDMTDDMADMMEDMNEINDVMGRSYNVGDEMDEDDLD
AELACLDDELDALEGLEEDSGPMYDAQPTTLPQEPSVVPESTGPTGVDEF
GLPVGPTPDRPAAVRL*
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mRNA from alignment at H-elongata_contig51651:1456..3917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51651.12439.1 ID=mRNA_H-elongata_contig51651.12439.1|Name=mRNA_H-elongata_contig51651.12439.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2462bp|location=Sequence derived from alignment at H-elongata_contig51651:1456..3917+ (Himanthalia elongata Himel1 dioecious)
CAAACCCCGTCGCTGCACCCACAGATCAAGGCGCTAGACCAAGAGCTCAT
CAAGTACCGCAACGCCCTCAAGAAGGCGAAGGGGCCTGCCGCCGCCAACA
TCAAGAGGCGCGCGATGGAGACCCTCAAGCGCAAGAAGATGTACGAGCAG
CAGAGGGACCAGATGGCTGGGCAGCAATTTAACATCGAGCAAACTAGCTT
CGCCATCGATTCCGTCAAGGACACCGCCACTACGGTATAAAAAATACACG
TCGCGAACGATGAAAAGTGGAACACCCGTTTCTATCGTGCTTTGTGAAAA
CTAAAACCTCCCTCCCTCCCTCCTGGTTCAGCAGTCATATACCATAATAC
CATATACCCGCCTCGCTCTCCGTTAGCCTAGCTCGGGTCTCGCGTCACAG
GTCCTCTTTCCCGTTCGAACGACGCGTCCCATGACCCCTTCCTTCGTCGC
TACTGGCTAACTATTAACTAGGTGGCCGCGATGAAGGACGCTAGCAAGAC
ACTTAAAGCTGATATCAAGAAGATCGACATCGGTCAGGTGGAGGACATGA
CCGACGACATGGCCGACATGATGGAGGACATGAACGAGATCAATGACGTC
ATGGGGCGCTCGTACAAGTAATACCACGTTTTACGTTTTCCCCTCCTCCG
TACTTCGACGGCCGATGACGTCAGCCTACCACGGAGCGCCGCATTATGCG
TTAACTGATATTGTAGCGGTATTATAAAGCATTAAGTGGTGGTGTAAGAG
CATCCACGTTTCCCCTCCCACAGTCAACCCAAAACCCCTCTCCCATGCCT
ACAGCCCACCCAATTGCCCTAAAGATGTTGTATTTGTTCTTTATTCTTCG
ACAATGAAGGTGCTTCAGAGATGGACTACGCAAGGATCACGTTTTAGCCA
TGACACCATCCCTTTGTGAATCAGAACGCCTTAGCTCTAGACGTTTTAAT
ACGCTGGTCTCTTGTCTTATCCCTTTCGTTCTCTATGTCTCATTATGTCC
AGTGTTGGGGATGAGATGGACGAAGACGACCTCGACGCAGAATTGGCCTG
CCTCGACGATGAACTCGATGTGAGCTATCCCGCTTCGAGAAGCCAGAAGA
TCTTCGCCTTTTCCGTGCGGAATAGTTGGTCATGTTTTTACAACATTGTT
TTGAAGGAAACGGCCATGCCACCAAATATCTTCGTTTGATTTTTCGCTCT
TTAGAATTCGAAGGACAAGCTAGCTGACCAGACTCTCACGACGGTAGCAA
CCTTGTCTTGACGATGCTACTTACTACCATGGCCATGGCGATGCACGCCG
CGAATGGAAATCTAAAGGGAACATAGTAGACGAATGGTGATGTTGCGATC
CCACCAATCTTCGGTACTCCGAAGCATCAAACACTATGTTCTTTTTTTGG
GATAGGATGAAATTTCCAAACCCTGTCTCTCCTGACACATAAGGTGCCTA
TGTTCCATGGACCCTCTCCTCCCCTCCCTACATCGTCTCCACTTCTCCTT
GCAGGCCCTGGAAGGTCTCGAGGAAGATTCGGGACCGATGTACGACGCGC
AGCCAACCACCCTCCCGCAGGAGCCATCGGTGGTACCGGAATCGACGGGG
CCCACGGGGGTGGACGAGTTCGGTTTGCCGGTTGGTCCGACCCCAGACAG
ACCTGCGGCGGTTCGATTGTGAACATAAATCAATCAGTGTGGACTGAGTT
GTTATTAGATCACGAGCATCGACCACAGGAAGCAAATGGAGTGAAGCTTC
CTGTATGATAGCGGGCGCCGGCGGGGTATCATTTATATACGGTATACGGA
GTATTTTATACGTCACACTCCGAGTGGTAATTGTTTGGCCGAAAATCTCT
TACCCCTTCACTCCCCCTATTATTAATAGTAGTATCACGTATCCCCTCCC
CCCCGCCTGTGGCAGAGATACCATGGAACCCTTTGATAGATGAGACTAAC
AAGGGATACAATATTTCAATCCGAACAACTAATGGATTCTGGCTCTAGGG
GTGTGTGGTACGGTTTACTATTCATAGGGGGTTATGACAGGGTAGGATGT
ATACCCCGTCACCTACGGTAACAGTCCGCGGTTTGTTTTGTGTCCTCTTG
CGCGTCGTCTAAAGTATTTTGGAAATATTGTATGTTGTGGTTTATGATCG
CTTAGGACTGACCTAGCGGCGCGGTCTTTCGGTGTTTCTTTGAAAAAGGG
GCGGAAATAATGTTCTTGGTTAATCGACCCGAGATCTCCGTGGTAAACGA
GGCATTGGCGTACGTCCCTTTCCGGGGCACCCACGGGAGTTAAAAGTCAA
ACCTACATTGGCTAGCCCTAATGGATCAACGGAAGTCGTGGTCTGTATGT
GTGCAAGAGAGAGAGAGAGACGATTGTGATGTTTTGGGCACTCCAAACGA
TTCCAGGCATGACTTGTTTTCCTGTTGGAGGTTTTCTTGTCCACATCAAA
GCCTTAAATAAT
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Coding sequence (CDS) from alignment at H-elongata_contig51651:1456..3917+

>mRNA_H-elongata_contig51651.12439.1 ID=mRNA_H-elongata_contig51651.12439.1|Name=mRNA_H-elongata_contig51651.12439.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig51651:1456..3917+ (Himanthalia elongata Himel1 dioecious)
ATGGAGACCCTCAAGCGCAAGAAGATGTACGAGCAGCAGAGGGACCAGAT
GGCTGGGCAGCAATTTAACATCGAGCAAACTAGCTTCGCCATCGATTCCG
TCAAGGACACCGCCACTACGATGGAGACCCTCAAGCGCAAGAAGATGTAC
GAGCAGCAGAGGGACCAGATGGCTGGGCAGCAATTTAACATCGAGCAAAC
TAGCTTCGCCATCGATTCCGTCAAGGACACCGCCACTACGGTGGCCGCGA
TGAAGGACGCTAGCAAGACACTTAAAGCTGATATCAAGAAGATCGACATC
GGTCAGGTGGAGGACATGACCGACGACATGGCCGACATGATGGAGGACAT
GAACGAGATCAATGACGTCATGGGGCGCTCGTACAAGTGGCCGCGATGAA
GGACGCTAGCAAGACACTTAAAGCTGATATCAAGAAGATCGACATCGGTC
AGGTGGAGGACATGACCGACGACATGGCCGACATGATGGAGGACATGAAC
GAGATCAATGACGTCATGGGGCGCTCGTACAATGTTGGGGATGAGATGGA
CGAAGACGACCTCGACGCAGAATTGGCCTGCCTCGACGATGAACTCGATT
GTTGGGGATGAGATGGACGAAGACGACCTCGACGCAGAATTGGCCTGCCT
CGACGATGAACTCGATGCCCTGGAAGGTCTCGAGGAAGATTCGGGACCGA
TGTACGACGCGCAGCCAACCACCCTCCCGCAGGAGCCATCGGTGGTACCG
GAATCGACGGGGCCCACGGGGGTGGACGAGTTCGGTTTGCCGGTTGGTCC
GACCCCAGACAGACCTGCGGCGGTTCGATTGTGAGCCCTGGAAGGTCTCG
AGGAAGATTCGGGACCGATGTACGACGCGCAGCCAACCACCCTCCCGCAG
GAGCCATCGGTGGTACCGGAATCGACGGGGCCCACGGGGGTGGACGAGTT
CGGTTTGCCGGTTGGTCCGACCCCAGACAGACCTGCGGCGGTTCGATTGT
GA
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