mRNA_H-elongata_contig5164.12436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5164.12436.1
Unique NamemRNA_H-elongata_contig5164.12436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5164.12436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5164contigH-elongata_contig5164:1398..2188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size200
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.9721637-CDS-H-elongata_contig5164:1397..15381622930844.9721637-CDS-H-elongata_contig5164:1397..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5164 1398..1538 -
1691679594.8440027-CDS-H-elongata_contig5164:1397..15381691679594.8440027-CDS-H-elongata_contig5164:1397..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5164 1398..1538 -
1622930844.984561-CDS-H-elongata_contig5164:2130..21631622930844.984561-CDS-H-elongata_contig5164:2130..2163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5164 2131..2163 -
1691679594.8555152-CDS-H-elongata_contig5164:2130..21631691679594.8555152-CDS-H-elongata_contig5164:2130..2163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5164 2131..2163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.0040617-UTR-H-elongata_contig5164:2163..21881622930845.0040617-UTR-H-elongata_contig5164:2163..2188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5164 2164..2188 -
1691679594.8687406-UTR-H-elongata_contig5164:2163..21881691679594.8687406-UTR-H-elongata_contig5164:2163..2188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5164 2164..2188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5164.12436.1prot_H-elongata_contig5164.12436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5164 1398..2163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5164.12436.1

>prot_H-elongata_contig5164.12436.1 ID=prot_H-elongata_contig5164.12436.1|Name=mRNA_H-elongata_contig5164.12436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MAQWLDFDSDYVDLIVVDGSDVSGDSDTTSTSSSHSDRRLRKAYAEETVY
DEQLIRYD
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mRNA from alignment at H-elongata_contig5164:1398..2188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5164.12436.1 ID=mRNA_H-elongata_contig5164.12436.1|Name=mRNA_H-elongata_contig5164.12436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=791bp|location=Sequence derived from alignment at H-elongata_contig5164:1398..2188- (Himanthalia elongata Himel1 dioecious)
CACCAGCAATGCCTTAGAGGTGGCCATGGCTCAGTGGCTAGACTTCGACT
CCGACTACGTGAGTCGCACCCGTAGCCCTGGCTCTACTCTTGTGCCCGTC
ATTCTAGCCCTGACCATAATGTTAGCCTTACCTTACCTTAGCTTACCTTA
CCGTTGACGGCCGAGTTTTGTCTGTTATATAGTAACGTAGAGGTTTTTGT
AATGAGGCGACTTATTCTTGGGGGCAGGTGAAAAAACGAAGATATGTCGA
AAGCTCCGTGTCGAGGAGTCTGTTTGGCGGCTGTGGGTGGAAGAGAAGAG
TACAGTAACTGCACAACGTCCTTGATCCTTAGTATCATAGTCTGCGATCC
TTAGTATCATAGTCTGCGATCGGAAATGAAAAGTCTCGTCGTGTAACACA
TTACACACATTAGAGAAGATATTTACCTGAATCTTTTCACAAGTGAGAAG
CCATTGGACGATTTGTCATTGCTTTTGTCACTTGTTCGACCACACACCGC
AGTTTGTCGTTTGTTTATGTAATATAATCTACTATACTTCACTCTACTCT
ACTGTCCTGTTTGTAGATGATGTAGAGGGTAAATATTCTAAATATATACC
TGTAAATATTTTTGGAAATGCCGAAATGTCGCGTGGAACTCCTGTCGCAG
GTGGATTTGATCGTAGTCGATGGATCTGACGTCAGTGGAGATTCAGACAC
GACATCGACATCCTCCAGCCACAGCGACAGACGACTTCGCAAGGCCTACG
CAGAGGAGACGGTCTATGATGAGCAGCTTATCCGATATGAC
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Coding sequence (CDS) from alignment at H-elongata_contig5164:1398..2188-

>mRNA_H-elongata_contig5164.12436.1 ID=mRNA_H-elongata_contig5164.12436.1|Name=mRNA_H-elongata_contig5164.12436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig5164:1398..2188- (Himanthalia elongata Himel1 dioecious)
ATGGCTCAGTGGCTAGACTTCGACTCCGACTACATGGCTCAGTGGCTAGA
CTTCGACTCCGACTACGTGGATTTGATCGTAGTCGATGGATCTGACGTCA
GTGGAGATTCAGACACGACATCGACATCCTCCAGCCACAGCGACAGACGA
CTTCGCAAGGCCTACGCAGAGGAGACGGTCTATGATGAGCAGCTTATCCG
ATATGACGTGGATTTGATCGTAGTCGATGGATCTGACGTCAGTGGAGATT
CAGACACGACATCGACATCCTCCAGCCACAGCGACAGACGACTTCGCAAG
GCCTACGCAGAGGAGACGGTCTATGATGAGCAGCTTATCCGATATGAC
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