mRNA_H-elongata_contig51607.12432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51607.12432.1
Unique NamemRNA_H-elongata_contig51607.12432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51607.12432.1 vs. uniprot
Match: D8LH58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH58_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 6.750e-37
Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:    1 RPNPLYRQVVLVNLESAANGVGRYFQPEKPCEEGLSAASRELDSRQRAQLGPLVDLILSPSLDEENAEAVGSFLDRSQEQF-GTGATLALALLDMGWSMPAPIRPKLSDWVFVAVYEALRRYGLFTRYGALNPPDARLPIVEMEPQRFDPSMLESPIFKALEFGSSA 498
            R NP+YRQ+V++ ++S A G  RY  P    E   S   R L+   +A +G L+D +LSP+ DEENAEA+   LDR +EQ  G GATLAL  LD  W +PAPIRP +     +AVYEALRR+G+FTR+G +  PD  L   E  P+  +  M +SPIFKA +F + A
Sbjct:   75 RVNPVYRQMVVLAVKSGAAGAARYLNPSG--ESSTSTGKRALNKAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCEEQHKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTETVPEPVE-GMEDSPIFKAAQFETDA 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51607.12432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH58_ECTSI6.750e-3747.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51607contigH-elongata_contig51607:2687..3817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000640.1
Exons3
Model size498
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51607.12432.1prot_H-elongata_contig51607.12432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51607 2687..3817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.4784129-CDS-H-elongata_contig51607:2686..28331622930844.4784129-CDS-H-elongata_contig51607:2686..2833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51607 2687..2833 +
1691679594.6322615-CDS-H-elongata_contig51607:2686..28331691679594.6322615-CDS-H-elongata_contig51607:2686..2833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51607 2687..2833 +
1622930844.5001385-CDS-H-elongata_contig51607:3020..32501622930844.5001385-CDS-H-elongata_contig51607:3020..3250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51607 3021..3250 +
1691679594.642984-CDS-H-elongata_contig51607:3020..32501691679594.642984-CDS-H-elongata_contig51607:3020..3250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51607 3021..3250 +
1622930844.5197268-CDS-H-elongata_contig51607:3696..38171622930844.5197268-CDS-H-elongata_contig51607:3696..3817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51607 3697..3817 +
1691679594.6531703-CDS-H-elongata_contig51607:3696..38171691679594.6531703-CDS-H-elongata_contig51607:3696..3817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51607 3697..3817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51607.12432.1

>prot_H-elongata_contig51607.12432.1 ID=prot_H-elongata_contig51607.12432.1|Name=mRNA_H-elongata_contig51607.12432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
RPNPLYRQVVLVNLESAANGVGRYFQPEKPCEEGLSAASRELDSRQRAQL
GPLVDLILSPSLDEENAEAVGSFLDRSQEQFGTGATLALALLDMGWSMPA
PIRPKLSDWVFVAVYEALRRYGLFTRYGALNPPDARLPIVEMEPQRFDPS
MLESPIFKALEFGSSA
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mRNA from alignment at H-elongata_contig51607:2687..3817+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51607.12432.1 ID=mRNA_H-elongata_contig51607.12432.1|Name=mRNA_H-elongata_contig51607.12432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at H-elongata_contig51607:2687..3817+ (Himanthalia elongata Himel1 dioecious)
AGACCAAATCCCCTGTACCGCCAGGTCGTATTAGTAAATCTCGAGTCAGC
AGCGAATGGGGTTGGGCGGTACTTTCAACCTGAGAAACCGTGCGAAGAGG
GGCTATCGGCAGCATCAAGAGAGCTAGATAGCCGTCAGAGAGCCCAGGTA
TTTCGAGGTATTTCGAGGAGTAATAATATACGAAAGAATGGAGGTTGGTA
GCATCCAATTGTCGTCAACCACTCGAAATCGGGTAAAACAAGCAGCGGTG
GCGCCTTACGCCGAGCTCACAAGCTTTGAGAATCATTGATGGATTGACCC
TTGTTGTTGACAAGTCTAGGCGCTACATTCTCAGCTGGGTCCGCTCGTGG
ACCTCATCCTAAGCCCATCTCTCGACGAAGAAAACGCCGAAGCCGTGGGA
AGCTTCCTGGATCGTTCCCAAGAACAATTTGGAACGGGAGCGACGCTGGC
GCTGGCCTTACTGGACATGGGTTGGTCTATGCCCGCGCCTATCCGACCCA
AACTCAGTGACTGGGTGTTCGTAGCGGTGTACGAGGCTCTTCGAAGATAC
GGGCTGTTCACCAGGTATCGTTGGAAAGGAGCGCGTTCCCGAATTTCTGT
CCAGTTATATTTCCTTTTTTTTTATCACGTACACGCGCATCGGCGGTGAG
CAAACCTTCACCTTCACGGCTACGTCTATCTCGTTTATCGCGGCCGAGTA
ATTCTGGCGCAGGCACAACAGACCCAGTTCTACTTATGCGGCACTGATTT
TCCCCTTATAAGCGCTGGCGATGATATCTACATCTACCCCAAATAATGTA
AAAATAATGTGATCGATCGTGTCGCGGTTTGCTCTGCGTTTTGTCTTCGT
ATCGTATAGTGATGCTTGCCAACCATAACCATTTAAAGTCATTGGGGCAG
AAAAATAACTTTTATCGTGACGAATAGTGACGAATAGCCCCCTGCTGTTG
ATAGTTAAGACAGGGGCGTCCTCTGCTACTTGGTATTGCGTTTTGCACGT
GACATCATAGATACGGTGCATTGAATCCTCCCGATGCACGGTTGCCGATC
GTGGAGATGGAGCCGCAACGCTTCGACCCGAGCATGCTTGAGTCTCCGAT
TTTCAAAGCCCTTGAGTTTGGATCTTCGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig51607:2687..3817+

>mRNA_H-elongata_contig51607.12432.1 ID=mRNA_H-elongata_contig51607.12432.1|Name=mRNA_H-elongata_contig51607.12432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig51607:2687..3817+ (Himanthalia elongata Himel1 dioecious)
AGACCAAATCCCCTGTACCGCCAGGTCGTATTAGTAAATCTCGAGTCAGC
AGCGAATGGGGTTGGGCGGTACTTTCAACCTGAGAAACCGTGCGAAGAGG
GGCTATCGGCAGCATCAAGAGAGCTAGATAGCCGTCAGAGAGCCCAGAGA
CCAAATCCCCTGTACCGCCAGGTCGTATTAGTAAATCTCGAGTCAGCAGC
GAATGGGGTTGGGCGGTACTTTCAACCTGAGAAACCGTGCGAAGAGGGGC
TATCGGCAGCATCAAGAGAGCTAGATAGCCGTCAGAGAGCCCAGCTGGGT
CCGCTCGTGGACCTCATCCTAAGCCCATCTCTCGACGAAGAAAACGCCGA
AGCCGTGGGAAGCTTCCTGGATCGTTCCCAAGAACAATTTGGAACGGGAG
CGACGCTGGCGCTGGCCTTACTGGACATGGGTTGGTCTATGCCCGCGCCT
ATCCGACCCAAACTCAGTGACTGGGTGTTCGTAGCGGTGTACGAGGCTCT
TCGAAGATACGGGCTGTTCACCAGCTGGGTCCGCTCGTGGACCTCATCCT
AAGCCCATCTCTCGACGAAGAAAACGCCGAAGCCGTGGGAAGCTTCCTGG
ATCGTTCCCAAGAACAATTTGGAACGGGAGCGACGCTGGCGCTGGCCTTA
CTGGACATGGGTTGGTCTATGCCCGCGCCTATCCGACCCAAACTCAGTGA
CTGGGTGTTCGTAGCGGTGTACGAGGCTCTTCGAAGATACGGGCTGTTCA
CCAGATACGGTGCATTGAATCCTCCCGATGCACGGTTGCCGATCGTGGAG
ATGGAGCCGCAACGCTTCGACCCGAGCATGCTTGAGTCTCCGATTTTCAA
AGCCCTTGAGTTTGGATCTTCGGCCATACGGTGCATTGAATCCTCCCGAT
GCACGGTTGCCGATCGTGGAGATGGAGCCGCAACGCTTCGACCCGAGCAT
GCTTGAGTCTCCGATTTTCAAAGCCCTTGAGTTTGGATCTTCGGCC
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