mRNA_H-elongata_contig11571.1243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11571.1243.1
Unique NamemRNA_H-elongata_contig11571.1243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: D8LBF3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBF3_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 1.380e-122
Identity = 213/363 (58.68%), Postives = 251/363 (69.15%), Query Frame = 1
Query:   16 DAFLEDFEGSLNDEADQWKNGHSAADTLLIDVPLQATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQDICREEQRMTDAILARDNALQDQLRAELQLREWLEEQKQMRAEERRKTEE 1104
            DAF+ED+  SLND  D ++   +      +D  LQA +AND+SNARLIEELE RN+RVSGFR QDV+TLQK LD EFE+EKE+I+K QREKREQAA+QAGLQRKRM+LE+QLREEISEI KD RIEFWL LVKQN+TP +ARI+VNS+TARALAK+MWTNTSLTSLDLS NGIDD AG Y+ARLLKR                                         LT  GA+ SG+ AL DMF KN+TLTSVNLWRCALG +AG++LSRG+ESN  I FLEVG N LAMA Q ++KTAL+ N K FEE Q + R+E  + D ILA + A+Q+QLRA               AEERRK EE
Sbjct:    5 DAFMEDYGDSLNDAGDPYETKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLNLVKQNATPPTARIDVNSVTARALAKSMWTNTSLTSLDLSRNGIDDAAGTYVARLLKRNTALVNVALGSNQLGVFACRAFGESLCSNSTLKCLSLESNSLTSDGANMSGIQALTDMFSKNSTLTSVNLWRCALGAEAGVALSRGMESNHTITFLEVGLNGLAMADQHKVKTALENNFKRFEECQAVRRQELSIADKILAEEKAMQEQLRAXXXXXXXXXXXXXXXAEERRKAEE 367          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A835YIK2_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK2_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.100e-77
Identity = 204/366 (55.74%), Postives = 251/366 (68.58%), Query Frame = 1
Query:   13 DDAFLEDFEGSLNDEADQWKNGHSAADTLLIDVPLQATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQDICREEQRMTDAILARDNALQDQLRAELQLREWLEEQKQMRAEERRKTEENR 1110
            D+   +D E +L D     K+     DT      LQA +AND+SNARLIEELE R  R +GFR QD++ LQK LD EFE EKE+++++  EK+EQA ++AGLQR+R  LEKQL EE  E+ ++  +  WL+LVKQ+ TPL+ARIEVNSI+ARALAKAMWTNTSLTSLDL+ N +DD AGAY       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LT  G   +G   +     KN  LTS+NLWRC LG  AG  L+ GI++NR I FLE+G+N LA++   QI   +  N   ++ LQ     +QR  D IL  +   QD LR E +L +WLE Q+ +RAEERR  EE R
Sbjct:   20 DEDRQQDIESTLGDR----KSPGETFDTSQ----LQAPNANDFSNARLIEELEGRRMRPTGFRDQDIIALQKVLDAEFEQEKEHLIRQHNEKKEQAMKEAGLQRRRAQLEKQLTEEKQEVAQNKIVAGWLSLVKQDETPLTARIEVNSISARALAKAMWTNTSLTSLDLARNNLDDFAGAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTNEGEKPAGFRYMVQALSKNAALTSLNLWRCGLGTPAGHDLAAGIQANRTITFLELGNNSLALSDLRQIGARVKDNRCHYDALQQQAMAKQREQDRILQEEKKAQDLLRKERELHDWLEAQRLLRAEERRAEEEER 377          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A7S3XPA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPA2_HETAK)

HSP 1 Score: 183 bits (464), Expect = 2.710e-50
Identity = 170/365 (46.58%), Postives = 220/365 (60.27%), Query Frame = 1
Query:   16 DAFLEDFEGSLN------DEADQWKNGHSAADTLLIDVPLQATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHG-ADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQDICREEQRMTDAILARDNALQDQLRAELQLREWLEEQKQMRAEER 1089
            DA  ++FE  L+      DE D    G +    L+     Q  DA   +N  L  ELE R  +  GF   D   LQK+ D E E      +K++ E++E+ A QAGL R++ L+EKQL+EE+  I++D R E WL LV+ ++TP  AR+E+ S+ AR LAKA+W N SL SLDLS NG+DD+AGA+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LT  G A+ +G    ADM   NNTLTS+NL+RC LGP+AG  L  G+E N  ++FL+VG N    +H  +I   +  N     +L+   ++         A         + E   ++WLEEQKQ RAEER
Sbjct:    7 DAVNKEFEDLLDHFADPDDEIDITAFGATGTTDLMDLQDSQPRDALRLTNDELNAELEMRGEKPKGFFTDDAKVLQKYFDVEHEEYLAKQMKERAEQQEKLAAQAGLIRRKRLVEKQLKEELLAIQRDRRAEHWLALVRGDATPPQARVELGSVAARCLAKALWGNGSLVSLDLSRNGLDDKAGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTESGLAEKTGAPEFADMLKHNNTLTSLNLFRCHLGPEAGTELLGGLEQNASLVFLDVGGNHFLQSHDARINGKIQENQSLRADLKSQAKQAAEKRSKEEAEXXXXXXXXQKERDTKQWLEEQKQKRAEER 371          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: F0Y577_AURAN (F-box domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y577_AURAN)

HSP 1 Score: 188 bits (478), Expect = 1.110e-49
Identity = 178/364 (48.90%), Postives = 231/364 (63.46%), Query Frame = 1
Query:   10 GDDAFLEDFEGS--LNDEADQWKNGHSAADTLLIDVPLQATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEE--LQDICREEQRMTDAILARDNALQDQLRAELQLREWLEEQKQMRAEER 1089
            G+D   ED +    L D  D  +NG    D++ +   L+  DA       L+ E+E R+    GF   D   LQK+ DQE   E E I +++RE+R+++  +A LQ+KR+ LEKQLREE   +  D +IE WL++V+ + T  SARI VNS+TARALAKAMW N SLTSLDLS N + D AGA I R+LKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  T    D +GV ALA     N +LT +NLWRC LG  AG  L++ +  N  II L+VG+N + +A + +I   +DAN K      LQ+   +EQ   +A  A   A+ D+ +   +L EW++ QK +RA ER
Sbjct:    3 GEDFTEEDLDAGDVLEDADDGDENGREREDSIDL-ADLKPMDAFLMKMEDLVTEMERRHLHPKGFFNDDAKELQKYFDQEHFKELEKIKEERREQRQRSXMKAQLQKKRLQLEKQLREEQDAVANDPQIEAWLSVVRSDQTRPSARIGVNSVTARALAKAMWNNKSLTSLDLSRNDLSDFAGAQIGRMLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNESTDQTGVVALAQALSSNASLTLLNLWRCDLGTTAGAELAKALHLNSSIINLDVGNNGVLVADKRRIADKVDANKKETRAIALQNHAFQEQLRKEA--AGRQAIADEEQKARELEEWMDAQKDLRAAER 363          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A6H5JI07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI07_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 8.080e-47
Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 1
Query:   16 DAFLEDFEGSLNDEADQW--KNGHSAADTLLIDVPLQATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLV 411
            DAF+ED+  SLND  D +  K   +AA+ L  D  LQA +AND+SNARLIEELE RN+RVSGFR QDV+TLQK LD EFE+EKE+I+K QREKREQAA+QAGLQRKRM+LE+QLREEISEI KD RIEFWL LV
Sbjct:    5 DAFMEDYGDSLNDAGDPYEPKTTRNAAEAL--DASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLHLV 136          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A7R9VZE3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZE3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.730e-37
Identity = 107/322 (33.23%), Postives = 160/322 (49.69%), Query Frame = 1
Query:    4 ATGDDAFLEDFEGSLND----EADQWKNGHSAADTLLIDVPL-QATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQ 954
            A  D+A    FE  L D     +DQ   G    D    D PL    DAN  +   L++ELE R  +  GF A D   LQ+  D+E E+  E   +++RE RE  A++A  QR+R+L+E ++REE  EI +D R++ WL L ++   P  +RIEVN+I+AR+LAKA+ T++S+  LD+S  G+ D AGAY+ R L+                                          LT    D SG+ A+A+M  KN  L  ++LWRC  G D+G +++  +  N  +  +EVG+N    +H   +   L   V + + LQ
Sbjct:    6 APPDEALFSLFEDLLEDTSVSSSDQPLAGEDERDD---DEPLVHKLDANALTLNELVQELEKRGLQARGFFADDAKVLQEKFDEEHELYVEAKRREKREAREADAKRAAEQRRRLLMETEVREEREEIGRDRRMKSWLLLTEEGMAPPHSRIEVNNISARSLAKALLTDSSILCLDVSNLGLSDLAGAYLCRALRSNRTLIKIELGSNKFGPKTCKSLGDALTSNNVVRFVSLESNPLTGEKNDISGIIAIAEMLSKNKALRYLSLWRCGTGADSGKAIADAMAFNDALTCIEVGYNGWENSHTSHVAAKLVREVISRQPLQ 324          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A482S097_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S097_9ARCH)

HSP 1 Score: 138 bits (348), Expect = 3.400e-34
Identity = 134/297 (45.12%), Postives = 193/297 (64.98%), Query Frame = 1
Query:  220 LQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQDICREEQRMTDAILARDNALQDQLRAELQLREWLEEQKQMRAEERRKTEENR 1110
            LQ+  ++EF+ E E    K+RE+  + A+Q GL+++R+ +E+ L+EE  E+ ++H+I   + ++K+N    S RI V S++AR+LAKAMW N ++T LDLS N + D AG Y+AR+LKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +    +D SG+ +LA+    N T+TS+NLWR  +    G  L+  +E N  ++F + GHN + +    +I   LDAN+  FE  + + R  + +             Q   E++L++WLEE++  R+E  R  EE R
Sbjct:    2 LQRAFEEEFKSELEQRRAKRREQLRKDAQQRGLRQRRLDMERSLQEEQDELARNHQIGMMIDMIKENMMGTSLRINVTSVSARSLAKAMWINDTITCLDLSSNDLSDHAGCYLARILKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIASE-SDLSGLTSLANALKMNKTITSLNLWRTNIPEAGGNILASALEVNETLLFCDTGHNFIEIGDVKKITDKLDANLAQFEANERVRRRHEEVRGQQRXXXXXXXSQRSKEVELKKWLEERRDHRSENLRLNEEMR 297          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A7S3ZT07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT07_9STRA)

HSP 1 Score: 139 bits (350), Expect = 6.330e-34
Identity = 147/331 (44.41%), Postives = 187/331 (56.50%), Query Frame = 1
Query:   52 DEADQWKNGHSAADTLLIDVPLQATDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAAR---QAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQDICREEQRMTDAILARDNALQDQLRAE 1035
            D+ D +  G    D  L    ++  DA +     L+ E E R     GF   D   LQK LD+EF    EN+ K + EKR    R   +A LQ+KR+ LEKQLREE   I      + WL  +K N T  + RIE +SI  RALAKA+W+++S+T LDLS NG+ D AGA + R+LKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LT    D +GV ALA     N TLT +N+WRC LG  AG +++  + +N  +I  +VGH  +           LDA     + + D     +R T A   R+ A +DQL  E
Sbjct:   21 DDGDDFTGG----DDDLDFSDMKPMDAFEMKMEDLVVEFERRGMHPKGFFNDDARELQKVLDKEFS---ENLEKLKAEKRAALQRNRMKAKLQKKRLQLEKQLREEQDAIHDSLDAKAWLNTIKNNQTRDACRIECDSIVCRALAKALWSSSSITCLDLSRNGLSDFAGAQLGRMLKRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMETNPLTNESTDQTGVVALAKALGSNTTLTRLNMWRCDLGTAAGAAIADALVANETLIDFDVGHGGIL---------ELDA-----QRIADRIAHNKRETKAKNKREKAYRDQLARE 330          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A6G0XP15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP15_9STRA)

HSP 1 Score: 130 bits (328), Expect = 9.870e-31
Identity = 127/277 (45.85%), Postives = 175/277 (63.18%), Query Frame = 1
Query:  124 TDANDYSNARLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQCQIKTALDANVKTFEELQ 954
            TDA       L  EL  R  +  GF   D   LQ+  D+E   EKE+ ++++ +   ++  +  ++RKR  LE +LREE+ E+ ++ ++E WL LVK N+TP  A + VNSI  RAL+K +  N SL +L+LS N ++             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LT    D SG+ A+  M  KNNTLTS+NLWR  LG D G +L++G++ N+ ++ L++G+N +A+A    I T L  N+  ++ LQ
Sbjct:   45 TDAFSLGQNDLRRELIDRGIQPKGFFNDDATRLQEEFDREHVAEKESRMRQKIQMAAKSYLRETIKRKRQQLETELREELDELAENPKLEVWLDLVKSNTTPQEALLRVNSIATRALSKVLPFNLSLRALNLSGNQLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLTADENDFSGIAAIGAMLTKNNTLTSLNLWRTRLGIDGGKALAKGLQGNKTMLCLDIGNNKIALADAAAISTTLADNLARYDALQ 321          
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Match: A0A7S3GWT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWT9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.920e-29
Identity = 117/213 (54.93%), Postives = 156/213 (73.24%), Query Frame = 1
Query:  163 ELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQAARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTCHGADSSGVCALADMFVKNNTLTSVNLWRCAL 801
            EL+ R+ + +GF   D   LQ+  D+EF+ + E++  +++EK+ +AA+Q GLQR+RML+EK L+EE  E+ K+H+I   +  +K N+T  S RIEVNS++AR+LAKAMW N ++T LDLS   ++D AG Y+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +  +  D +G+ ALAD    N TLTS+NLWRC +
Sbjct:   52 ELDKRSLKTTGFPDTDREILQRVFDEEFKADLEDMRARRKEKQRKAAQQLGLQRRRMLMEKTLQEEQDELAKNHQIGLMIEHIKDNATTTSLRIEVNSVSARSLAKAMWVNDTITCLDLSSIDLNDHAGCYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIATY-QDMNGLKALADGIRINTTLTSLNLWRCGI 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11571.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LBF3_ECTSI1.380e-12258.68Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YIK2_9STRA2.100e-7755.74Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A7S3XPA2_HETAK2.710e-5046.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y577_AURAN1.110e-4948.90F-box domain-containing protein n=1 Tax=Aureococcu... [more]
A0A6H5JI07_9PHAE8.080e-4770.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VZE3_9STRA1.730e-3733.23Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A482S097_9ARCH3.400e-3445.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3ZT07_9STRA6.330e-3444.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6G0XP15_9STRA9.870e-3145.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3GWT9_9STRA1.920e-2954.93Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11571contigH-elongata_contig11571:4141..5871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.2
Seed ortholog evalue1.2e-99
Seed eggNOG ortholog2880.D8LBF3
KEGG koko:K17576
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size1113
Cds size1113
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11571.1243.1prot_H-elongata_contig11571.1243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11571 4141..5871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.172415-CDS-H-elongata_contig11571:4140..48451622929671.172415-CDS-H-elongata_contig11571:4140..4845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11571 4141..4845 -
1691679113.6477873-CDS-H-elongata_contig11571:4140..48451691679113.6477873-CDS-H-elongata_contig11571:4140..4845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11571 4141..4845 -
1622929671.2105024-CDS-H-elongata_contig11571:5291..55341622929671.2105024-CDS-H-elongata_contig11571:5291..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11571 5292..5534 -
1691679113.656444-CDS-H-elongata_contig11571:5291..55341691679113.656444-CDS-H-elongata_contig11571:5291..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11571 5292..5534 -
1622929671.22334-CDS-H-elongata_contig11571:5706..58711622929671.22334-CDS-H-elongata_contig11571:5706..5871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11571 5707..5871 -
1691679113.6639264-CDS-H-elongata_contig11571:5706..58711691679113.6639264-CDS-H-elongata_contig11571:5706..5871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11571 5707..5871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11571.1243.1

>prot_H-elongata_contig11571.1243.1 ID=prot_H-elongata_contig11571.1243.1|Name=mRNA_H-elongata_contig11571.1243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=371bp
MATGDDAFLEDFEGSLNDEADQWKNGHSAADTLLIDVPLQATDANDYSNA
RLIEELETRNARVSGFRAQDVLTLQKFLDQEFEVEKENILKKQREKREQA
ARQAGLQRKRMLLEKQLREEISEIEKDHRIEFWLTLVKQNSTPLSARIEV
NSITARALAKAMWTNTSLTSLDLSCNGIDDQAGAYIARLLKRNNALKTIS
LGSNQLGPLACRAFGDSLCSNATLRSLSLESNHLTCHGADSSGVCALADM
FVKNNTLTSVNLWRCALGPDAGISLSRGIESNRKIIFLEVGHNDLAMAHQ
CQIKTALDANVKTFEELQDICREEQRMTDAILARDNALQDQLRAELQLRE
WLEEQKQMRAEERRKTEENR*
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mRNA from alignment at H-elongata_contig11571:4141..5871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11571.1243.1 ID=mRNA_H-elongata_contig11571.1243.1|Name=mRNA_H-elongata_contig11571.1243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1731bp|location=Sequence derived from alignment at H-elongata_contig11571:4141..5871- (Himanthalia elongata Himel1 dioecious)
ATGGCTACCGGCGATGATGCATTTTTGGAAGACTTTGAAGGCTCCTTGAA TGACGAAGCTGACCAGTGGAAGAACGGGCACAGTGCGGCCGATACACTAT TGATAGATGTTCCTCTTCAAGCTACTGACGCGAATGACTACTCCAATGCG CGTCTGATAGAGGAGGTGAGACGTCCCAACCTCTGTACAACTGATCGAAC TCGAATTTATTTAGTCCAAACTGTTACGAGAGGTTGGAGATCTGAGGTCG CCCCCGTTCCATCGCCCGTAACGCGACGCATACCGAAAACCAACCAACAG TGATTCCTGCTCTTTGGTTGTTTCATGCATCATAAAGCTCGAGACCAGGA ATGCCCGCGTGAGCGGTTTCCGAGCCCAAGACGTGTTGACCCTTCAGAAA TTTTTGGACCAAGAATTCGAGGTGGAAAAGGAAAACATCTTAAAGAAACA ACGGGAGAAGAGAGAACAGGCGGCGAGGCAGGCGGGTTTGCAACGGAAGC GCATGCTGTTAGAGAAGCAGCTGAGAGAAGAAATATCCGAAATCGAGAAG GATCATCGGATCGAATTCTGGCTAACCCTGGTAAGGTCTTGTGGTCCGTG CAACAGTAGCACCCGCCGTCAGCGAGCCCCGGGTAATAAAAGAGTTGCTG TAGATAGTATCCACCTCTCCAGGGAAAGTTACAGCTGGCTATAGTGGCTA CTACTAATATTATTAGGAACTACGGTACCATGTACAGTAGTATTATTACT TACAACCTGCCGGAAACAAAAATGTTTAAAATCATCCATCTATTAATAGT TGGAACTCTACTTTACACTGGATCGATCGGATATTCAGTGACAAAAGGCA AATTGATTTTTCTGGCGCGGAAAGGTAAATAAAGTAGATCCCGAGCAGCG CGCACCATGCAAGAGCTTGTCCCGCATTCTTATCTGCCGAGAGAGAATTA TTACAACAACTTGGTTAGTGTTTGACCTTTCACAGACTCGAGACGATTCC TCTTATCGTGACGCCTGTATTTCAAGGTCAAGCAGAATTCCACACCACTA TCTGCTAGGATTGAAGTCAACTCAATCACGGCTCGGGCTCTCGCTAAGGC TATGTGGACAAATACTTCACTAACCAGCTTGGACCTGTCGTGCAATGGCA TCGATGATCAGGCTGGTGCATACATAGCACGTTTGCTCAAACGTAACAAC GCTTTGAAGACTATTTCGCTCGGCTCGAACCAACTCGGTCCTCTCGCATG CCGAGCTTTTGGAGACTCGTTGTGCTCAAACGCTACTCTAAGATCCTTAA GTCTCGAGTCGAATCACTTGACTTGCCATGGAGCGGATTCATCAGGAGTT TGCGCCCTTGCAGATATGTTCGTCAAGAATAACACACTGACGTCAGTCAA TCTATGGAGGTGCGCCCTTGGGCCAGATGCGGGCATATCATTGTCCCGAG GCATTGAATCGAATCGAAAAATTATATTTCTCGAAGTCGGCCATAACGAC CTGGCGATGGCACATCAGTGTCAGATCAAGACCGCTTTAGACGCCAACGT CAAAACGTTTGAAGAATTGCAAGATATATGTCGCGAAGAGCAGCGCATGA CTGATGCGATTTTAGCTAGGGATAATGCCCTACAAGACCAGCTGCGAGCC GAACTCCAGCTTCGAGAGTGGCTTGAGGAGCAGAAACAGATGCGCGCCGA GGAGCGGCGAAAAACAGAGGAAAATAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11571:4141..5871-

>mRNA_H-elongata_contig11571.1243.1 ID=mRNA_H-elongata_contig11571.1243.1|Name=mRNA_H-elongata_contig11571.1243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2226bp|location=Sequence derived from alignment at H-elongata_contig11571:4141..5871- (Himanthalia elongata Himel1 dioecious)
ATGGCTACCGGCGATGATGCATTTTTGGAAGACTTTGAAGGCTCCTTGAA
TGACGAAGCTGACCAGTGGAAGAACGGGCACAGTGCGGCCGATACACTAT
TGATAGATGTTCCTCTTCAAGCTACTGACGCGAATGACTACTCCAATGCG
CGTCTGATAGAGGAGATGGCTACCGGCGATGATGCATTTTTGGAAGACTT
TGAAGGCTCCTTGAATGACGAAGCTGACCAGTGGAAGAACGGGCACAGTG
CGGCCGATACACTATTGATAGATGTTCCTCTTCAAGCTACTGACGCGAAT
GACTACTCCAATGCGCGTCTGATAGAGGAGCTCGAGACCAGGAATGCCCG
CGTGAGCGGTTTCCGAGCCCAAGACGTGTTGACCCTTCAGAAATTTTTGG
ACCAAGAATTCGAGGTGGAAAAGGAAAACATCTTAAAGAAACAACGGGAG
AAGAGAGAACAGGCGGCGAGGCAGGCGGGTTTGCAACGGAAGCGCATGCT
GTTAGAGAAGCAGCTGAGAGAAGAAATATCCGAAATCGAGAAGGATCATC
GGATCGAATTCTGGCTAACCCTGCTCGAGACCAGGAATGCCCGCGTGAGC
GGTTTCCGAGCCCAAGACGTGTTGACCCTTCAGAAATTTTTGGACCAAGA
ATTCGAGGTGGAAAAGGAAAACATCTTAAAGAAACAACGGGAGAAGAGAG
AACAGGCGGCGAGGCAGGCGGGTTTGCAACGGAAGCGCATGCTGTTAGAG
AAGCAGCTGAGAGAAGAAATATCCGAAATCGAGAAGGATCATCGGATCGA
ATTCTGGCTAACCCTGGTCAAGCAGAATTCCACACCACTATCTGCTAGGA
TTGAAGTCAACTCAATCACGGCTCGGGCTCTCGCTAAGGCTATGTGGACA
AATACTTCACTAACCAGCTTGGACCTGTCGTGCAATGGCATCGATGATCA
GGCTGGTGCATACATAGCACGTTTGCTCAAACGTAACAACGCTTTGAAGA
CTATTTCGCTCGGCTCGAACCAACTCGGTCCTCTCGCATGCCGAGCTTTT
GGAGACTCGTTGTGCTCAAACGCTACTCTAAGATCCTTAAGTCTCGAGTC
GAATCACTTGACTTGCCATGGAGCGGATTCATCAGGAGTTTGCGCCCTTG
CAGATATGTTCGTCAAGAATAACACACTGACGTCAGTCAATCTATGGAGG
TGCGCCCTTGGGCCAGATGCGGGCATATCATTGTCCCGAGGCATTGAATC
GAATCGAAAAATTATATTTCTCGAAGTCGGCCATAACGACCTGGCGATGG
CACATCAGTGTCAGATCAAGACCGCTTTAGACGCCAACGTCAAAACGTTT
GAAGAATTGCAAGATATATGTCGCGAAGAGCAGCGCATGACTGATGCGAT
TTTAGCTAGGGATAATGCCCTACAAGACCAGCTGCGAGCCGAACTCCAGC
TTCGAGAGTGGCTTGAGGAGCAGAAACAGATGCGCGCCGAGGAGCGGCGA
AAAACAGAGGAAAATAGGTGAGTCAAGCAGAATTCCACACCACTATCTGC
TAGGATTGAAGTCAACTCAATCACGGCTCGGGCTCTCGCTAAGGCTATGT
GGACAAATACTTCACTAACCAGCTTGGACCTGTCGTGCAATGGCATCGAT
GATCAGGCTGGTGCATACATAGCACGTTTGCTCAAACGTAACAACGCTTT
GAAGACTATTTCGCTCGGCTCGAACCAACTCGGTCCTCTCGCATGCCGAG
CTTTTGGAGACTCGTTGTGCTCAAACGCTACTCTAAGATCCTTAAGTCTC
GAGTCGAATCACTTGACTTGCCATGGAGCGGATTCATCAGGAGTTTGCGC
CCTTGCAGATATGTTCGTCAAGAATAACACACTGACGTCAGTCAATCTAT
GGAGGTGCGCCCTTGGGCCAGATGCGGGCATATCATTGTCCCGAGGCATT
GAATCGAATCGAAAAATTATATTTCTCGAAGTCGGCCATAACGACCTGGC
GATGGCACATCAGTGTCAGATCAAGACCGCTTTAGACGCCAACGTCAAAA
CGTTTGAAGAATTGCAAGATATATGTCGCGAAGAGCAGCGCATGACTGAT
GCGATTTTAGCTAGGGATAATGCCCTACAAGACCAGCTGCGAGCCGAACT
CCAGCTTCGAGAGTGGCTTGAGGAGCAGAAACAGATGCGCGCCGAGGAGC
GGCGAAAAACAGAGGAAAATAGGTGA
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