mRNA_H-elongata_contig516.12428.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig516.12428.1 vs. uniprot
Match: A0A6H5JDS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS6_9PHAE) HSP 1 Score: 881 bits (2277), Expect = 1.480e-298 Identity = 513/1018 (50.39%), Postives = 674/1018 (66.21%), Query Frame = 1
Query: 1 AISVELAEVLDVGEATADGEFTTLSQYRIETYYDDIDPIDNDCE-GAKCLGILTRDGSLEFDHKYGCTYPNQSFTGYPDSCGVEYNL--EGSTGD-ATIAAVQIAFHPNSLRTVQVLMDGDVIVEEWEG----SAGEELQTIPGVEGAVGSELTVQGVLEVGEYIGILEVEIYVEVDEVEAVGVPASSRINILATATTDEASVIHTLDNDTSDESAWTCSSG-EICEATYDFGDVESLEQVRIAFASNTDA-GGEFAVFTAGGSGVFSSLRTGIEA--GGRPVGNDGLQTFGGVRALAQYVKIKAT-PATGGTIALTEASSRPFRDVEFRIGEDAPERAVGEKPWLKEAGPLP-----AGRQDDRNYEFPAYDPRSSSDGGCDSPGVFNGCHIFYIKDGNMSADSRWTCGPTTLGDDTQMSSPYDDGSICAVEFDLNTYRYVRQIQLAFHRGNEQHTEFAIQAYTKNYAWVTVVPSAISSGNTTGLQTFDVSVHTDVLRIVPAFQSVSQMVSIKEMVILEKSKKDFVEGTVPVFHMDRNFTPAQSLVCTTQDGEGITEVTTHFKFDIPDAGDDYRINFADATLSGLRMKFPADRSFTFDIVYSSSGEDVTQTFTSAGGKKTFETFTLSTPAIDD--IEIVAVEGPTFDYNPSYPTLRVVDFQILGEIVMTSGTFQVMETYYNGAFGWGRLPDLIAEASADQEIIMTAICETKGAAFDGTDCVGELDDTPIYLPPVPRGSGFFVNGPIFLKSNVTLEGDWNAEYGDWSYFWVYDGPNIYSTGEDAVIVIDGATSVSLEYIYFSGWWEDVTGSIVPGTVGNLCLEVRNSQDLQLGGELEFNSARSGAARFTDSSNITAFAFWVGE-YETGNFLELTRVDDFYISAPPEMSGLLVDACTNVIFEGAYDTFEIPNPGLDPPT-GGEQTSNVVIIGDSSGIVFKNMPVGSGIEPRILMESTDPLTLDDIPRYEEAETGDCIVQVPEGSTEETLVQLN----SET--------ILTLSGICWVL 2952
AI+VEL+EVL T D E+ S + DPI +DC +C+G LTRDGSLE D +Y CT +S SCGV Y L G GD +TI++V+IA HP+S++++QV + G +E WE +A E+Q IPGVEG GS+L + G +E+GE + ILEVEIYV VDE+EA GV AS+R + ATA+ D AS ++TLD D S S+WTCS+G E+CE T+D VESLEQ+RIAF+ TDA GGEF+V TAG SGVFS++RTGIEA RP+G DGLQT GGVRA+A+YVK+ T P +GG+IA++E VEFR+GED P R V EK WLK GPLP G QD P++D R DGGCD P F GCH+FYIKD NM DSRWTCGP G D +D C +EF LN +RY+RQIQ+AF+ G+ +H EF+I+AYT WVTVVPSAISS + + QTFDV+VHT+++R++P F ++ + IKE+V LEK KKDF+EGT+PVF T +DG + ++ T F+FD+ G+ +N +T++ LRM+FPADRSF F + Y + + + FTSAGG KT+ETFTLSTPA D +E+VAV GPTFD+ P YP LRVVD Q++GE+ G V+ T WG +PD+I E ++Q+ +M AICE KG+ FDG DCVGELDD+ + + + ++++GPIFLKS V ++GDW EY + + +YDG + TGEDA++V+DGAT L + F ED TG IVPGTVGN L VRNSQD++ E+ S R+G A FTDS N++AF F+ G+ ETGN++ELTRVDD + A P MSG+L+D C +++FEG D F IP+ PP GG+QT+NVV+ GDSSGIVF+N V +G EPRIL+EST+PLTLD++ RY +AE GDCIV+VPEG+ E+ +VQ+ S+T +L SG CWVL
Sbjct: 25 AITVELSEVLAPSAITVDAEWQGSSSFS------GTDPISHDCPLSGRCIGQLTRDGSLELDSRYDCTRLLESA-----SCGVRYGLIDGGQWGDLSTISSVRIALHPDSVQSLQVGI-GRNELEAWEADPDLTAAGEMQEIPGVEGLTGSDLYIYGDMEIGESLRILEVEIYVAVDEIEATGVSASTRAFVTATASADSASAMNTLDGDVSASSSWTCSAGDEVCEVTFDLQAVESLEQLRIAFSEETDAVGGEFSVMTAGESGVFSAVRTGIEADPAARPLGTDGLQTVGGVRAMARYVKLGVTVPTSGGSIAISE--------VEFRVGEDVPARPVAEKAWLKTTGPLPRAVNPGGSQD------PSFDIRLPEDGGCDPPIHFEGCHVFYIKDENM--DSRWTCGPLVAGSDRNS---WD----CDLEFSLNYFRYIRQIQIAFYTGDGEHNEFSIEAYTAAGEWVTVVPSAISSEDGSDYQTFDVAVHTNMIRLLPKFGQITDFIGIKELVFLEKRKKDFIEGTIPVFSTRIRSTSNDD---EEEDGADV-DIPTRFEFDLQIEGNYIDMNVPPSTVTALRMRFPADRSFVFMVEY----DGIVEEFTSAGGPKTWETFTLSTPAEVDFGLEVVAVTGPTFDHIPDYPALRVVDLQVVGELRKEPGYIDVVTTTIET---WGVVPDVIGEGVSEQKTVMKAICEAKGSTFDGIDCVGELDDSEVTIKL--QFGDYYIDGPIFLKSGVFIDGDWKDEYPTFCWLVLYDGDSNTVTGEDAMVVVDGATGAELYGLAFVRK-EDPTGDIVPGTVGNTNLAVRNSQDIRFS-EMGLFSGRNGGATFTDSRNMSAFIFYNGDGLETGNYMELTRVDDVHFRALPNMSGVLIDTCNDIVFEGV-DEFAIPSAYFSPPVAGGDQTANVVVTGDSSGIVFQNFIVAAGAEPRILVESTEPLTLDNVIRYTDAEIGDCIVEVPEGTDEDFVVQVRTNPFSDTSSIDTINQLLAKSGTCWVL 991
BLAST of mRNA_H-elongata_contig516.12428.1 vs. uniprot
Match: D7FSQ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ6_ECTSI) HSP 1 Score: 858 bits (2218), Expect = 5.830e-290 Identity = 496/998 (49.70%), Postives = 649/998 (65.03%), Query Frame = 1
Query: 1 AISVELAEVLDVGEATADGEFTTLSQYRIETYYDDIDPIDNDCEGAKCLGILTRDGSLEFDHKYGCTYPNQSFTGYPDSCGVEYNLEGSTGDATI-AAVQIAFHPNSLRTVQVLMDGDVIVEEWEGSAGE-ELQTIPGVEGAVGSELTVQGVLEVGEYIGILEVEIYVEVDEVEAVGVPASSRINILATATTDEASVIHTLDNDTSDESAWTCSSGE-ICEATYDFGDVESLEQVRIAFASNTDAGGEFAVFTAGGSGVFSSLRTGIEAGGRPVGNDGLQTFGGVRALAQYVKIKATPA-TGGTIALTEASSRPFRDVEFRIGEDAPERAVGEKPWLKEAGPLPAGRQDDRNYEFPAYDPRSSSDGGCDSPGVFNGCHIFYIKDGNMSADSRWTCGPTTLGDDTQMSSPYDDGSICAVEFDLNTYRYVRQIQLAFHRGNEQHTEFAIQAYTKNYAWVTVVPSAISSGNTTGLQTFDVSVHTDVLRIVPAFQSVSQMVSIKEMVILEKSKKDFVEGTVPVFHMDRNFTPAQSLVCTTQDGEGITEVTTHFKFDIPDAGDDYRINFADATLSGLRMKFPADRSFTFDIVYSS--SGEDVTQTFTSAGGKKTFETFTLSTPAIDDIE----IVAVEGPTFDYNPSYPTLRVVDFQILGEIVMTSGTFQVMETYYNGAFGWGRLPDLIAEASADQEIIMTAICETKGAAFDGTDCVGELDDTPIYLPPVPRGSGFFVNGPIFLKSNVTLEGDWNAEYGDWSY---FWVYDGPNIYSTGEDAVIVIDGATSVSLEYIYFSGWWEDVTGSIVPGTVGNLCLEVRNSQDLQLGGELEFNSARSGAARFTDSSNITAFAFWVGEYETGNFLELTRVDDFYISAPPEMSGLLVDACTNVIFEG-AYDTFEIPNPGLDPPTGGEQTSNVVIIGDSSGIVFKNMPVGSGIEPR-ILMESTDPLTLDDIPRYEEAETGDCIVQVPEGSTEETLVQLNSETILTLSGICWV 2949
AISVEL+EVL + EA A GE LS IE +Y DPID DC +C+G+LTRDGSLE D +YGCT P F CGV++ L D +I V IA HP+S+ ++VL+DG I+EEW+ G ELQ IPG+EG G L+++GV G+Y+ ILEV IY+ VDEVE +GV AS+R +I ATATT+ AS I TLD D +D S+W C S E CE TYD VESL+Q+RIAF++NTDAG + V AG SGVFS +R+G+EAGGRP+G+DGLQTFGGV ALA+YV+I+A P+ GG I + E VE R+G DAP R V EK WL+ G LP D + P +D R S GGCDSP F GCH++YIKDG+MS DSRWTCGP G+ + S +D C + LN +RYVRQIQ AFH G+EQ+ EF+I+ TVV SAISSG++T QTFD+ VHT+ +R+VP FQ V Q + IKEMVILE + F+ GT+PVF F P G+ +V T F+F +P D ++ +T++ ++++FP+DR F F + Y + E++ + FTSAGG T ETFTLS PA D+E I AV GPTF+ P YPTLRV+DFQI+GEI G F+V+ T W +PD+I + +DQE IMT ICETKG AFDGTDCVGELDD+ +++ + +F++GP+FLKS VTL G GD+SY Y + ++ EDAVIVIDG T ++ +Y +TG I PGT+GNLCLEVR SQDL+L E++ + AR+GAARF DS NI+ GEYETGNF+E+ VDDF+ PE++GL ++ NV+ +G A + +E+P P PPTGG+Q ++VVI G SSGIVF++ + +G + +LMEST+PLTLD+I YE AE+GDCI+ VP S ++ +VQLNS IL+ G CWV
Sbjct: 24 AISVELSEVLPIEEAYATGEHAGLSASSIEDFYGGEDPIDGDCAVGRCVGLLTRDGSLELDSRYGCTPPYAGF------CGVDFALSADFVDKSILGGVTIALHPDSMSKLRVLVDGATILEEWDAVPGSSELQEIPGLEGVEGGRLSIEGVEGAGDYLAILEVGIYIVVDEVEPLGVSASTRTSISATATTNNASAILTLDGDATDGSSWACLSSEGACEITYDLQAVESLQQLRIAFSTNTDAGAKLNVLAAGESGVFSYVRSGLEAGGRPLGSDGLQTFGGVLALARYVRIEAVPSGEGGAIVINE--------VELRVG-DAPVRPVSEKAWLQPTGMLPLAA-DTGSSGHPNFDNREPSAGGCDSPAHFEGCHVYYIKDGDMSDDSRWTCGPLAAGN---LVSNNED---CHLMLSLNYFRYVRQIQFAFHMGDEQYNEFSIE---------TVVSSAISSGDSTDYQTFDIEVHTNEIRLVPVFQRVDQWIGIKEMVILETKEMGFINGTLPVFDYSYWF-PRGDGGDDDSSGDSDEDVPTRFEFHMPRPEDYFQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEIETDEEIVEEFTSAGGPDTMETFTLSAPA--DVERFVYITAVSGPTFESQPDYPTLRVIDFQIVGEIKKDPGHFEVVTTTMTV---WRVVPDIIGDGVSDQEEIMTTICETKGGAFDGTDCVGELDDSSVHISM--KNGHYFLDGPVFLKSGVTLSG------GDYSYNEPSRTYLVLHNHTRLEDAVIVIDGVTGGEVDSVYIEHQ-TPMTGDITPGTLGNLCLEVRGSQDLKLA-EIDCHQARTGAARFVDSKNISVSVIRDGEYETGNFMEVDGVDDFHFEGIPEVAGLRIEDSNNVVLQGGASNVYEVPTPVFLPPTGGDQAASVVITGASSGIVFQDCSIYAGGDTAPVLMESTEPLTLDNILGYEAAESGDCIIDVPPESGDDLIVQLNSYAILSKDGDCWV 974
BLAST of mRNA_H-elongata_contig516.12428.1 vs. uniprot
Match: D8LG23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG23_ECTSI) HSP 1 Score: 443 bits (1140), Expect = 4.940e-136 Identity = 262/511 (51.27%), Postives = 338/511 (66.14%), Query Frame = 1
Query: 1 AISVELAEVLDVGEATADGEFTTLSQYRIETYYDDIDPIDNDCE-GAKCLGILTRDGSLEFDHKYGCTYPNQSFTGYPDSCGVEYNLEGST---GDATIAAVQIAFHPNSLRTVQVLMDGDVIVEEWEG----SAGEELQTIPGVEGAVGSELTVQGVLEVGEYIGILEVEIYVEVDEVEAVGVPASSRINILATATTDEASVIHTLDNDTSDESAWTCSSG-EICEATYDFGDVESLEQVRIAFASNTDA-GGEFAVFTAGGSGVFSSLRTGIEA--GGRPVGNDGLQTFGGVRALAQYVKIKAT-PATGGTIALTEASSRPFRDVEFRIGEDAPERAVGEKPWLKEAGPLPAGRQDDRNYEFPAYDPRSSSDGGCDSPGVFNGCHIFYIKDGNMSADSRWTCGPTTLGDDTQMSSPYDDGSICAVEFDLNTYRYVRQIQLAFHRGNEQHTEFAIQAYTKNYAWVTVVPSAISSGNTTGLQTFDVSVHTDVLRIVPAFQSVSQMVSIKEM 1494
AI+VEL+EVL T D E+ S + DPI +DC +C+G LTRDGSLE D +Y CT +S SCGV Y L S TI++V+IA HP+S+++ QV + D + E WE +A E+Q IPGVEG GS+L + G +E+GE + ILEVEIY+ VDEVEA GV AS+R ++ ATA+ D S ++TLD D S S+WTCSSG E+CE T+D VESLEQ+RIAF+ TDA GGEF+V AG SGVFS++RTG+EA GRPVG DGLQTFGGVRA+A+YVK+ T P +GGTIA++E VE R+GED P R V EK WLK GPLP + + P+YD R DGGCD P F GCH+FYIKD NM DSRWTCGP G D S +D C ++F LN +RY+RQIQ+AF+ G+ +H EF+I+AYT WVTVVPSAIS+ + + QTFDV+VHT+++R++P F ++ + IKE+
Sbjct: 25 AITVELSEVLAPSAITVDAEWQGSSSFS------GTDPISHDCPLSGRCIGELTRDGSLELDSRYDCTRLLESA-----SCGVRYGLIDSAQWDDRTTISSVKIALHPDSVQSFQVGIGQDEL-EAWEADPDLTAAGEMQEIPGVEGLTGSDLYIYGDMEIGESLRILEVEIYITVDEVEATGVSASTRASVTATASADSVSAMNTLDGDASAASSWTCSSGDEVCEITFDLQAVESLEQLRIAFSEETDAVGGEFSVMVAGESGVFSAVRTGLEADPAGRPVGTDGLQTFGGVRAMARYVKLGVTVPTSGGTIAISE--------VELRVGEDVPARPVAEKAWLKTTGPLPRAVSSGGSLD-PSYDIRLPEDGGCDPPIHFEGCHVFYIKDENM--DSRWTCGPLVAGSDR---SSWD----CELDFSLNYFRYIRQIQIAFYTGDGEHNEFSIEAYTAAGEWVTVVPSAISAEDGSDYQTFDVAVHTNMIRLLPKFGQITDFIGIKEV 505
BLAST of mRNA_H-elongata_contig516.12428.1 vs. uniprot
Match: D8LG22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG22_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 3.230e-129 Identity = 230/461 (49.89%), Postives = 309/461 (67.03%), Query Frame = 1
Query: 1618 EVTTHFKFDIPDAGDDYRINFADATLSGLRMKFPADRSFTFDIVYSSSGEDVTQTFTSAGGKKTFETFTLSTPAIDD--IEIVAVEGPTFDYNPSYPTLRVVDFQILGEIVMTSGTFQVMETYYNGAFGWGRLPDLIAEASADQEIIMTAICETKGAAFDGTDCVGELDDTPIYLPPVPRGSGFFVNGPIFLKSNVTLEGDWNAEYGDWSYFWVYDGPNIYSTGEDAVIVIDGATSVSLEYIYFSGWWEDVTGSIVPGTVGNLCLEVRNSQDLQLGGELEFNSARSGAARFTDSSNITAFAFWVG-EYETGNFLELTRVDDFYISAPPEMSGLLVDACTNVIFEGAYDTFEIPNPGLDPPTGG-EQTSNVVIIGDSSGIVFKNMPVGSGIEPRILMESTDPLTLDDIPRYEEAETGDCIVQVPEGSTEETLVQLN----SET--------ILTLSGICWVL 2952
++ T F+FD+P GD ++ +T++ LRM+FPADRSF F + Y DV + FTSAGG KT+ETFTL+TPA D ++IVAV GPTFD+ P YP LRVVDFQ++GE+ G V+ T WG +PD+I E ++Q+ +M AICE KG+ FDG DCVGEL+D+ + + ++++GPIFLKS V ++G+W EY + + +Y+G + TGEDA++V+DGAT L + F E+ TG IVPGTVGN L VRNSQD+Q E+ S R+G A FTDS N++AF F+ G E ETGN++ELTRVDD + A P MSG+L D C +++FEG D F IP PP G +QT+NVV+ GDSSGIVF+N V +G EPRIL+EST+PLTLD++ RY +AE GDCIV+VPEG+ E+ +VQ+ S+T +L SG CWVL
Sbjct: 43 DIPTRFEFDLPIEGDYIDMDVPPSTVTALRMRFPADRSFVFMVEYG----DVVEEFTSAGGPKTWETFTLATPAEVDYGLDIVAVTGPTFDHIPDYPALRVVDFQVVGELRKEPGYIDVVTTTIET---WGVVPDVIGEGVSEQKNVMKAICEAKGSTFDGVDCVGELNDSEVTIKL--HFGDYYIDGPIFLKSGVFIDGEWQDEYPTFCWLVLYEGDSNTVTGEDAMVVVDGATGAELYGLAFVRK-EEPTGDIVPGTVGNTNLAVRNSQDIQFS-EMGLFSGRNGGATFTDSRNMSAFIFYNGDELETGNYMELTRVDDVHFRALPNMSGVLFDTCNDIVFEGV-DDFAIPTAYFSPPVAGSDQTANVVVTGDSSGIVFQNFVVAAGAEPRILVESTEPLTLDNVIRYTDAEIGDCIVEVPEGTDEDFVVQVRTNPFSDTSSIDTINQLLAKSGTCWVL 491 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig516.12428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig516.12428.1 >prot_H-elongata_contig516.12428.1 ID=prot_H-elongata_contig516.12428.1|Name=mRNA_H-elongata_contig516.12428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=872bp MDGDVIVEEWEGSAGEELQTIPGVEGAVGSELTVQGVLEVGEYIGILEVEback to top mRNA from alignment at H-elongata_contig516:3480..16513- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig516.12428.1 ID=mRNA_H-elongata_contig516.12428.1|Name=mRNA_H-elongata_contig516.12428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=13034bp|location=Sequence derived from alignment at H-elongata_contig516:3480..16513- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig516:3480..16513- >mRNA_H-elongata_contig516.12428.1 ID=mRNA_H-elongata_contig516.12428.1|Name=mRNA_H-elongata_contig516.12428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5232bp|location=Sequence derived from alignment at H-elongata_contig516:3480..16513- (Himanthalia elongata Himel1 dioecious)back to top |