mRNA_H-elongata_contig51534.12418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51534.12418.1
Unique NamemRNA_H-elongata_contig51534.12418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Match: T0QLB1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QLB1_SAPDV)

HSP 1 Score: 48.5 bits (114), Expect = 1.450e-6
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 TGDPTKRLRGVFGYIGLLALLGLSIELAVTLFF 99
            TGDP+KR+ G FGY+GL A LGLSIE A+TL +
Sbjct:   34 TGDPSKRMHGGFGYLGLFASLGLSIEAAITLLY 66
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BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Match: A0A067CU62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CU62_SAPPC)

HSP 1 Score: 50.1 bits (118), Expect = 1.720e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 TGDPTKRLRGVFGYIGLLALLGLSIELAVTLFFS 102
            TGDP KR+ G FGY+GL A LGLSIE A+TL +S
Sbjct:  110 TGDPAKRMHGGFGYLGLFASLGLSIEAAITLLYS 143
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BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Match: A0A1V9Y7C0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7C0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.790e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 TGDPTKRLRGVFGYIGLLALLGLSIELAVTLFFS 102
            TGDPTKR+ G FGY+GL A +GLSIE AV L  S
Sbjct:  110 TGDPTKRMNGAFGYLGLFAAIGLSIEAAVRLITS 143
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BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Match: A0A177WEC3_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WEC3_BATDL)

HSP 1 Score: 48.1 bits (113), Expect = 5.290e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 TGDPTKRLRGVFGYIGLLALLGLSIELAVTLFFS 102
            TGDP KR+RG F Y+GLL LLG+SI+ A+TL  S
Sbjct:   76 TGDPDKRVRGAFSYLGLLTLLGISIKTAITLAMS 109
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BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Match: A0A177WEB0_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WEB0_BATDL)

HSP 1 Score: 48.1 bits (113), Expect = 9.880e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 TGDPTKRLRGVFGYIGLLALLGLSIELAVTLFFS 102
            TGDP KR+RG F Y+GLL LLG+SI+ A+TL  S
Sbjct:  113 TGDPDKRVRGAFSYLGLLTLLGISIKTAITLAMS 146
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BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Match: A0A0P1AFP1_PLAHL (GST, gst n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFP1_PLAHL)

HSP 1 Score: 45.8 bits (107), Expect = 7.360e-5
Identity = 19/32 (59.38%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 TGDPTKRLRGVFGYIGLLALLGLSIELAVTLF 96
            +GDP KRL+G+FGYIGLL ++GLS+E ++ +F
Sbjct:  111 SGDPKKRLQGLFGYIGLLVMVGLSVEASLRMF 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51534.12418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
T0QLB1_SAPDV1.450e-666.67Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A067CU62_SAPPC1.720e-667.65Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9Y7C0_9STRA4.790e-667.65Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A177WEC3_BATDL5.290e-664.71Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A177WEB0_BATDL9.880e-664.71Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A0P1AFP1_PLAHL7.360e-559.38GST, gst n=1 Tax=Plasmopara halstedii TaxID=4781 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51534contigH-elongata_contig51534:2986..3090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.9120142-CDS-H-elongata_contig51534:2985..30901622930842.9120142-CDS-H-elongata_contig51534:2985..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51534 2986..3090 +
1691679593.9522357-CDS-H-elongata_contig51534:2985..30901691679593.9522357-CDS-H-elongata_contig51534:2985..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51534 2986..3090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51534.12418.1prot_H-elongata_contig51534.12418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51534 2986..3090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51534.12418.1

>prot_H-elongata_contig51534.12418.1 ID=prot_H-elongata_contig51534.12418.1|Name=mRNA_H-elongata_contig51534.12418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
TGDPTKRLRGVFGYIGLLALLGLSIELAVTLFFS*
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mRNA from alignment at H-elongata_contig51534:2986..3090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51534.12418.1 ID=mRNA_H-elongata_contig51534.12418.1|Name=mRNA_H-elongata_contig51534.12418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig51534:2986..3090+ (Himanthalia elongata Himel1 dioecious)
ACCGGAGACCCCACGAAGCGCCTCCGTGGAGTCTTCGGCTACATCGGCTT
GCTGGCCCTCCTTGGTCTGTCCATCGAGCTCGCGGTCACTCTATTTTTCT
CCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51534:2986..3090+

>mRNA_H-elongata_contig51534.12418.1 ID=mRNA_H-elongata_contig51534.12418.1|Name=mRNA_H-elongata_contig51534.12418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig51534:2986..3090+ (Himanthalia elongata Himel1 dioecious)
ACCGGAGACCCCACGAAGCGCCTCCGTGGAGTCTTCGGCTACATCGGCTT
GCTGGCCCTCCTTGGTCTGTCCATCGAGCTCGCGGTCACTCTATTTTTCT
CCTGAACCGGAGACCCCACGAAGCGCCTCCGTGGAGTCTTCGGCTACATC
GGCTTGCTGGCCCTCCTTGGTCTGTCCATCGAGCTCGCGGTCACTCTATT
TTTCTCCTGA
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